RNA–Protein interactions for RNA: ENST00000621217.4

GGA3-222, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 3, humanhuman

TSL 2

Gene GGA3, Length 4,181 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA3-222ENST00000621217 KIF3BO15066 747 aa12.26□□□□□ -0.45
GGA3-222ENST00000621217 PRG4Q92954 1404 aaPredicted RBP12.25□□□□□ -0.45
GGA3-222ENST00000621217 PLEKHG5O94827 1062 aa12.25□□□□□ -0.45
GGA3-222ENST00000621217 TIMELESSQ9UNS1 1208 aa12.25□□□□□ -0.45
GGA3-222ENST00000621217 OSCARQ8IYS5 282 aa12.25□□□□□ -0.45
GGA3-222ENST00000621217 NUTM2DQ5VT03 806 aaPredicted RBP12.24□□□□□ -0.45
GGA3-222ENST00000621217 CDK13Q14004 1512 aaKnown RBP12.24□□□□□ -0.45
GGA3-222ENST00000621217 TRHP20396 242 aaPredicted RBP12.23□□□□□ -0.45
GGA3-222ENST00000621217 TIAM1Q13009 1591 aa12.23□□□□□ -0.45
GGA3-222ENST00000621217 MYOM3Q5VTT5 1437 aa12.23□□□□□ -0.45
GGA3-222ENST00000621217 SAFB2Q14151 953 aaKnown RBP eCLIP12.22□□□□□ -0.45
GGA3-222ENST00000621217 ANKRD30AQ9BXX3 1397 aa12.22□□□□□ -0.45
GGA3-222ENST00000621217 ANP32AP39687 249 aaKnown RBP12.22□□□□□ -0.45
GGA3-222ENST00000621217 NPM2Q86SE8 214 aaKnown RBP12.22□□□□□ -0.45
GGA3-222ENST00000621217 B4GALNT3Q6L9W6 998 aa12.21□□□□□ -0.45
GGA3-222ENST00000621217 AFAP1Q8N556 730 aa12.21□□□□□ -0.45
GGA3-222ENST00000621217 WDR97A6NE52 1622 aa12.2□□□□□ -0.46
GGA3-222ENST00000621217 SPAG9O60271 1321 aaKnown RBP12.2□□□□□ -0.46
GGA3-222ENST00000621217 PLB1Q6P1J6 1458 aa12.19□□□□□ -0.46
GGA3-222ENST00000621217 PCF11O94913 1555 aaKnown RBP12.19□□□□□ -0.46
GGA3-222ENST00000621217 CCER2I3L3R5 266 aa12.19□□□□□ -0.46
GGA3-222ENST00000621217 FYCO1Q9BQS8 1478 aa12.18□□□□□ -0.46
GGA3-222ENST00000621217 CCDC136Q96JN2 1154 aa12.18□□□□□ -0.46
GGA3-222ENST00000621217 TSHZ2Q9NRE2 1034 aa12.18□□□□□ -0.46
GGA3-222ENST00000621217 TNNT2P45379 298 aaPredicted RBP12.18□□□□□ -0.46
GGA3-222ENST00000621217 CC2D1BQ5T0F9 858 aaKnown RBP12.18□□□□□ -0.46
GGA3-222ENST00000621217 KIF21AQ7Z4S6 1674 aa12.16□□□□□ -0.46
GGA3-222ENST00000621217 SLC24A1O60721 1099 aa12.14□□□□□ -0.47
GGA3-222ENST00000621217 STK26Q9P289 416 aa12.13□□□□□ -0.47
GGA3-222ENST00000621217 KIAA0586Q9BVV6 1533 aa12.13□□□□□ -0.47
GGA3-222ENST00000621217 GRIN2AQ12879 1464 aa12.13□□□□□ -0.47
GGA3-222ENST00000621217 IQGAP2Q13576 1575 aa12.13□□□□□ -0.47
GGA3-222ENST00000621217 WASHC2AQ641Q2 1341 aa12.12□□□□□ -0.47
GGA3-222ENST00000621217 CCDC184Q52MB2 194 aa12.12□□□□□ -0.47
GGA3-222ENST00000621217 EFCAB5A4FU69 1503 aa12.12□□□□□ -0.47
GGA3-222ENST00000621217 EPRSP07814 1512 aaKnown RBP12.12□□□□□ -0.47
GGA3-222ENST00000621217 UACAQ9BZF9 1416 aa12.12□□□□□ -0.47
GGA3-222ENST00000621217 NBR1Q14596 966 aa12.1□□□□□ -0.47
GGA3-222ENST00000621217 ST20-MTHFSA0A0A6YYL1 179 aa12.1□□□□□ -0.47
GGA3-222ENST00000621217 NBPF8Q3BBV2 869 aa12.1□□□□□ -0.47
GGA3-222ENST00000621217 RBM19Q9Y4C8 960 aaKnown RBP12.1□□□□□ -0.47
GGA3-222ENST00000621217 KIF15Q9NS87 1388 aa12.1□□□□□ -0.47
GGA3-222ENST00000621217 PRKRIP1Q9H875 184 aaPredicted RBP12.08□□□□□ -0.48
GGA3-222ENST00000621217 SYNJ2O15056 1496 aa12.08□□□□□ -0.48
GGA3-222ENST00000621217 CUL7Q14999 1698 aa12.08□□□□□ -0.48
GGA3-222ENST00000621217 PPM1GO15355 546 aaPredicted RBP12.08□□□□□ -0.48
GGA3-222ENST00000621217 NEUROD2Q15784 382 aa12.08□□□□□ -0.48
GGA3-222ENST00000621217 WASHC2CQ9Y4E1 1318 aa12.07□□□□□ -0.48
GGA3-222ENST00000621217 PTPRKQ15262 1439 aa12.07□□□□□ -0.48
GGA3-222ENST00000621217 ROCK2O75116 1388 aaKnown RBP12.07□□□□□ -0.48
GGA3-222ENST00000621217 NAIPQ13075 1403 aa12.07□□□□□ -0.48
GGA3-222ENST00000621217 FAM69CQ0P6D2 419 aa12.06□□□□□ -0.48
GGA3-222ENST00000621217 KNSTRNQ9Y448 316 aa12.06□□□□□ -0.48
GGA3-222ENST00000621217 ARHGEF11O15085 1522 aa12.06□□□□□ -0.48
GGA3-222ENST00000621217 TROQ12816 1431 aaPredicted RBP12.06□□□□□ -0.48
GGA3-222ENST00000621217 ANKRD50Q9ULJ7 1429 aa12.06□□□□□ -0.48
GGA3-222ENST00000621217 KANK1Q14678 1352 aa12.06□□□□□ -0.48
GGA3-222ENST00000621217 C11orf95C9JLR9 678 aaPredicted RBP12.06□□□□□ -0.48
GGA3-222ENST00000621217 CANXP27824 592 aaKnown RBP12.06□□□□□ -0.48
GGA3-222ENST00000621217 MAPKBP1O60336 1514 aa12.05□□□□□ -0.48
GGA3-222ENST00000621217 WDR43Q15061 677 aaKnown RBP eCLIP12.05□□□□□ -0.48
GGA3-222ENST00000621217 RAPGEF3O95398 923 aa12.04□□□□□ -0.48
GGA3-222ENST00000621217 RSPH4AQ5TD94 716 aa12.04□□□□□ -0.48
GGA3-222ENST00000621217 HFM1A2PYH4 1435 aa12.04□□□□□ -0.48
GGA3-222ENST00000621217 PPP4R2Q9NY27 417 aa12.04□□□□□ -0.48
GGA3-222ENST00000621217 POGKQ9P215 609 aa12.04□□□□□ -0.48
GGA3-222ENST00000621217 ZBTB47Q9UFB7 747 aaPredicted RBP12.04□□□□□ -0.48
GGA3-222ENST00000621217 KIF7Q2M1P5 1343 aa12.03□□□□□ -0.48
GGA3-222ENST00000621217 TRAK1Q9UPV9 953 aa12.03□□□□□ -0.48
GGA3-222ENST00000621217 SOX12O15370 315 aa12.02□□□□□ -0.49
GGA3-222ENST00000621217 THOC2Q8NI27 1593 aaKnown RBP12.02□□□□□ -0.49
GGA3-222ENST00000621217 ARHGAP5Q13017 1502 aa12.02□□□□□ -0.49
GGA3-222ENST00000621217 EHBP1L1Q8N3D4 1523 aa12.01□□□□□ -0.49
GGA3-222ENST00000621217 TMF1P82094 1093 aa12.01□□□□□ -0.49
GGA3-222ENST00000621217 CCDC144AA2RUR9 1427 aa12.01□□□□□ -0.49
GGA3-222ENST00000621217 MAGI1Q96QZ7 1491 aaPredicted RBP12.01□□□□□ -0.49
GGA3-222ENST00000621217 ZBTB7CA1YPR0 619 aa12□□□□□ -0.49
GGA3-222ENST00000621217 HECW1Q76N89 1606 aa12□□□□□ -0.49
GGA3-222ENST00000621217 NUTM2FA1L443 756 aa12□□□□□ -0.49
GGA3-222ENST00000621217 C14orf37Q86TY3 774 aa12□□□□□ -0.49
GGA3-222ENST00000621217 USP47Q96K76 1375 aa12□□□□□ -0.49
GGA3-222ENST00000621217 NBPF1Q3BBV0 1214 aa11.99□□□□□ -0.49
GGA3-222ENST00000621217 CCDC7Q96M83 1385 aa11.99□□□□□ -0.49
GGA3-222ENST00000621217 SRPK2P78362 688 aaKnown RBP11.99□□□□□ -0.49
GGA3-222ENST00000621217 DAPK1P53355 1430 aa11.98□□□□□ -0.49
GGA3-222ENST00000621217 SCAPERQ9BY12 1400 aa11.98□□□□□ -0.49
GGA3-222ENST00000621217 SUPT6HQ7KZ85 1726 aaKnown RBP11.98□□□□□ -0.49
GGA3-222ENST00000621217 C9orf84Q5VXU9 1444 aa11.97□□□□□ -0.49
GGA3-222ENST00000621217 NEFMP07197 916 aa11.97□□□□□ -0.49
GGA3-222ENST00000621217 ABCC5O15440 1437 aa11.95□□□□□ -0.5
GGA3-222ENST00000621217 MIA2Q96PC5 1412 aa11.95□□□□□ -0.5
GGA3-222ENST00000621217 TMEM132EQ6IEE7 984 aa11.95□□□□□ -0.5
GGA3-222ENST00000621217 EIF4G3O43432 1585 aaKnown RBP11.95□□□□□ -0.5
GGA3-222ENST00000621217 MAP3K1Q13233 1512 aa11.94□□□□□ -0.5
GGA3-222ENST00000621217 NUP153P49790 1475 aaKnown RBP11.94□□□□□ -0.5
GGA3-222ENST00000621217 PTPN23Q9H3S7 1636 aa11.94□□□□□ -0.5
GGA3-222ENST00000621217 PANK3Q9H999 370 aa11.93□□□□□ -0.5
GGA3-222ENST00000621217 CDCA8Q53HL2 280 aa11.92□□□□□ -0.5
GGA3-222ENST00000621217 PLIN1O60240 522 aa11.92□□□□□ -0.5
GGA3-222ENST00000621217 U2SURPO15042 1029 aaKnown RBP11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms