RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 FYCO1Q9BQS8 1478 aa14.96□□□□□ -0.02
UPF3A-212ENST00000619079 ATP10BO94823 1461 aa14.95□□□□□ -0.02
UPF3A-212ENST00000619079 MAP3K1Q13233 1512 aa14.95□□□□□ -0.02
UPF3A-212ENST00000619079 PPP4R2Q9NY27 417 aa14.94□□□□□ -0.02
UPF3A-212ENST00000619079 ZCCHC11Q5TAX3 1644 aaKnown RBP14.93□□□□□ -0.02
UPF3A-212ENST00000619079 EPRSP07814 1512 aaKnown RBP14.93□□□□□ -0.02
UPF3A-212ENST00000619079 CDK13Q14004 1512 aaKnown RBP14.93□□□□□ -0.02
UPF3A-212ENST00000619079 TRHP20396 242 aaPredicted RBP14.93□□□□□ -0.02
UPF3A-212ENST00000619079 ASXL2Q76L83 1435 aa14.92□□□□□ -0.02
UPF3A-212ENST00000619079 PLEKHD1A6NEE1 506 aa14.92□□□□□ -0.02
UPF3A-212ENST00000619079 CCDC18Q5T9S5 1454 aa14.9□□□□□ -0.02
UPF3A-212ENST00000619079 HNRNPUQ00839 825 aaKnown RBP eCLIP14.89□□□□□ -0.03
UPF3A-212ENST00000619079 NOP58Q9Y2X3 529 aaKnown RBP14.89□□□□□ -0.03
UPF3A-212ENST00000619079 SIN3AQ96ST3 1273 aa14.87□□□□□ -0.03
UPF3A-212ENST00000619079 WDR7Q9Y4E6 1490 aa14.87□□□□□ -0.03
UPF3A-212ENST00000619079 TIAM1Q13009 1591 aa14.87□□□□□ -0.03
UPF3A-212ENST00000619079 FAM69CQ0P6D2 419 aa14.86□□□□□ -0.03
UPF3A-212ENST00000619079 MTUS2Q5JR59 1369 aa14.85□□□□□ -0.03
UPF3A-212ENST00000619079 LRRIQ1Q96JM4 1722 aa14.83□□□□□ -0.04
UPF3A-212ENST00000619079 IRX6P78412 446 aaPredicted RBP14.82□□□□□ -0.04
UPF3A-212ENST00000619079 ABCC10Q5T3U5 1492 aa14.81□□□□□ -0.04
UPF3A-212ENST00000619079 TONSLQ96HA7 1378 aa14.81□□□□□ -0.04
UPF3A-212ENST00000619079 TROQ12816 1431 aaPredicted RBP14.8□□□□□ -0.04
UPF3A-212ENST00000619079 LRRC9Q6ZRR7 1453 aa14.8□□□□□ -0.04
UPF3A-212ENST00000619079 RTL5Q5HYW3 569 aaPredicted RBP14.8□□□□□ -0.04
UPF3A-212ENST00000619079 HIRIP3Q9BW71 556 aaPredicted RBP14.79□□□□□ -0.04
UPF3A-212ENST00000619079 DIP2BQ9P265 1576 aa14.78□□□□□ -0.04
UPF3A-212ENST00000619079 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.77□□□□□ -0.04
UPF3A-212ENST00000619079 MAGI3Q5TCQ9 1506 aa14.77□□□□□ -0.05
UPF3A-212ENST00000619079 CFAP43Q8NDM7 1665 aa14.76□□□□□ -0.05
UPF3A-212ENST00000619079 NBR1Q14596 966 aa14.76□□□□□ -0.05
UPF3A-212ENST00000619079 PHLDB1Q86UU1 1377 aa14.76□□□□□ -0.05
UPF3A-212ENST00000619079 ANP32AP39687 249 aaKnown RBP14.75□□□□□ -0.05
UPF3A-212ENST00000619079 KIF14Q15058 1648 aa14.75□□□□□ -0.05
UPF3A-212ENST00000619079 EHBP1L1Q8N3D4 1523 aa14.75□□□□□ -0.05
UPF3A-212ENST00000619079 ANO8Q9HCE9 1232 aaPredicted RBP14.75□□□□□ -0.05
UPF3A-212ENST00000619079 FAM50AQ14320 339 aaKnown RBP14.74□□□□□ -0.05
UPF3A-212ENST00000619079 AEBP2Q6ZN18 517 aaPredicted RBP14.74□□□□□ -0.05
UPF3A-212ENST00000619079 CD109Q6YHK3 1445 aa14.73□□□□□ -0.05
UPF3A-212ENST00000619079 IPO9Q96P70 1041 aaKnown RBP14.72□□□□□ -0.05
UPF3A-212ENST00000619079 ZBED9Q6R2W3 1325 aa14.72□□□□□ -0.05
UPF3A-212ENST00000619079 B4GALNT3Q6L9W6 998 aa14.72□□□□□ -0.05
UPF3A-212ENST00000619079 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP14.71□□□□□ -0.05
UPF3A-212ENST00000619079 GLI2P10070 1586 aa14.71□□□□□ -0.05
UPF3A-212ENST00000619079 PAK3O75914 559 aaPredicted RBP14.71□□□□□ -0.06
UPF3A-212ENST00000619079 KIF13AQ9H1H9 1805 aa14.7□□□□□ -0.06
UPF3A-212ENST00000619079 TTC37Q6PGP7 1564 aa14.69□□□□□ -0.06
UPF3A-212ENST00000619079 ABCA9Q8IUA7 1624 aa14.69□□□□□ -0.06
UPF3A-212ENST00000619079 ZBTB47Q9UFB7 747 aaPredicted RBP14.68□□□□□ -0.06
UPF3A-212ENST00000619079 NCOA2Q15596 1464 aa14.68□□□□□ -0.06
UPF3A-212ENST00000619079 TSPOAP1O95153 1857 aa14.68□□□□□ -0.06
UPF3A-212ENST00000619079 SUPT6HQ7KZ85 1726 aaKnown RBP14.67□□□□□ -0.06
UPF3A-212ENST00000619079 ZNF777Q9ULD5 760 aaPredicted RBP14.66□□□□□ -0.06
UPF3A-212ENST00000619079 CNTLNQ9NXG0 1405 aa14.66□□□□□ -0.06
UPF3A-212ENST00000619079 MAP3K4Q9Y6R4 1608 aa14.66□□□□□ -0.06
UPF3A-212ENST00000619079 CFDP1Q9UEE9 299 aaPredicted RBP14.65□□□□□ -0.06
UPF3A-212ENST00000619079 SALL2Q9Y467 1007 aaPredicted RBP14.65□□□□□ -0.06
UPF3A-212ENST00000619079 PLCH2O75038 1416 aa14.64□□□□□ -0.07
UPF3A-212ENST00000619079 TEX14Q8IWB6 1497 aa14.64□□□□□ -0.07
UPF3A-212ENST00000619079 ARHGAP5Q13017 1502 aa14.64□□□□□ -0.07
UPF3A-212ENST00000619079 EFCAB2Q5VUJ9 269 aa14.64□□□□□ -0.07
UPF3A-212ENST00000619079 USP35Q9P2H5 1018 aa14.64□□□□□ -0.07
UPF3A-212ENST00000619079 WASHC2AQ641Q2 1341 aa14.63□□□□□ -0.07
UPF3A-212ENST00000619079 FANCAO15360 1455 aa14.63□□□□□ -0.07
UPF3A-212ENST00000619079 HFM1A2PYH4 1435 aa14.62□□□□□ -0.07
UPF3A-212ENST00000619079 GPATCH8Q9UKJ3 1502 aaKnown RBP14.62□□□□□ -0.07
UPF3A-212ENST00000619079 MYO5CQ9NQX4 1742 aa14.62□□□□□ -0.07
UPF3A-212ENST00000619079 SMG6Q86US8 1419 aaKnown RBP14.6□□□□□ -0.07
UPF3A-212ENST00000619079 CCDC136Q96JN2 1154 aa14.58□□□□□ -0.07
UPF3A-212ENST00000619079 PRKRIP1Q9H875 184 aaPredicted RBP14.58□□□□□ -0.07
UPF3A-212ENST00000619079 MRS2Q9HD23 443 aa14.58□□□□□ -0.07
UPF3A-212ENST00000619079 MYOM3Q5VTT5 1437 aa14.58□□□□□ -0.07
UPF3A-212ENST00000619079 PREX2Q70Z35 1606 aa14.58□□□□□ -0.07
UPF3A-212ENST00000619079 HSPA5P11021 654 aaKnown RBP14.58□□□□□ -0.08
UPF3A-212ENST00000619079 EIF4G2P78344 907 aaKnown RBP eCLIP14.58□□□□□ -0.08
UPF3A-212ENST00000619079 CDC42BPAQ5VT25 1732 aa14.58□□□□□ -0.08
UPF3A-212ENST00000619079 PPRC1Q5VV67 1664 aaKnown RBP14.58□□□□□ -0.08
UPF3A-212ENST00000619079 AKNAQ7Z591 1439 aa14.57□□□□□ -0.08
UPF3A-212ENST00000619079 NEO1Q92859 1461 aa14.57□□□□□ -0.08
UPF3A-212ENST00000619079 PTPN23Q9H3S7 1636 aa14.57□□□□□ -0.08
UPF3A-212ENST00000619079 C11orf95C9JLR9 678 aaPredicted RBP14.57□□□□□ -0.08
UPF3A-212ENST00000619079 FAM9BQ8IZU0 186 aa14.57□□□□□ -0.08
UPF3A-212ENST00000619079 ITSN2Q9NZM3 1697 aa14.57□□□□□ -0.08
UPF3A-212ENST00000619079 RNF123Q5XPI4 1314 aa14.57□□□□□ -0.08
UPF3A-212ENST00000619079 FGD6Q6ZV73 1430 aa14.56□□□□□ -0.08
UPF3A-212ENST00000619079 IL27Q8NEV9 243 aa14.56□□□□□ -0.08
UPF3A-212ENST00000619079 ARAP3Q8WWN8 1544 aa14.56□□□□□ -0.08
UPF3A-212ENST00000619079 ZNF644Q9H582 1327 aaPredicted RBP14.56□□□□□ -0.08
UPF3A-212ENST00000619079 UBE2Q2Q8WVN8 375 aa14.56□□□□□ -0.08
UPF3A-212ENST00000619079 ADGRL1O94910 1474 aa14.56□□□□□ -0.08
UPF3A-212ENST00000619079 CDC42BPBQ9Y5S2 1711 aa14.55□□□□□ -0.08
UPF3A-212ENST00000619079 CFAP74Q9C0B2 1584 aa14.55□□□□□ -0.08
UPF3A-212ENST00000619079 SCAPERQ9BY12 1400 aa14.54□□□□□ -0.08
UPF3A-212ENST00000619079 NCOA1Q15788 1441 aa14.54□□□□□ -0.08
UPF3A-212ENST00000619079 RAPGEF3O95398 923 aa14.53□□□□□ -0.08
UPF3A-212ENST00000619079 HNRNPMP52272 730 aaKnown RBP eCLIP14.53□□□□□ -0.08
UPF3A-212ENST00000619079 CCDC184Q52MB2 194 aa14.53□□□□□ -0.08
UPF3A-212ENST00000619079 MIA2Q96PC5 1412 aa14.53□□□□□ -0.08
UPF3A-212ENST00000619079 PPM1GO15355 546 aaPredicted RBP14.52□□□□□ -0.08
UPF3A-212ENST00000619079 NUDCQ9Y266 331 aa14.52□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms