RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 PREX2Q70Z35 1606 aa30.76■■■□□ 2.51
UPF3A-211ENST00000618700 PLCH2O75038 1416 aa30.75■■■□□ 2.51
UPF3A-211ENST00000618700 CDC42BPAQ5VT25 1732 aa30.75■■■□□ 2.51
UPF3A-211ENST00000618700 TEX14Q8IWB6 1497 aa30.73■■■□□ 2.51
UPF3A-211ENST00000618700 GPATCH8Q9UKJ3 1502 aaKnown RBP30.73■■■□□ 2.51
UPF3A-211ENST00000618700 CCNB3Q8WWL7 1395 aa30.71■■■□□ 2.51
UPF3A-211ENST00000618700 CDC42BPBQ9Y5S2 1711 aa30.7■■■□□ 2.5
UPF3A-211ENST00000618700 ITSN2Q9NZM3 1697 aa30.68■■■□□ 2.5
UPF3A-211ENST00000618700 CFAP74Q9C0B2 1584 aa30.66■■■□□ 2.5
UPF3A-211ENST00000618700 FANCAO15360 1455 aa30.66■■■□□ 2.5
UPF3A-211ENST00000618700 NEO1Q92859 1461 aa30.66■■■□□ 2.5
UPF3A-211ENST00000618700 ARHGAP5Q13017 1502 aa30.65■■■□□ 2.5
UPF3A-211ENST00000618700 KDM6BO15054 1643 aa30.63■■■□□ 2.49
UPF3A-211ENST00000618700 PHLDB1Q86UU1 1377 aa30.63■■■□□ 2.49
UPF3A-211ENST00000618700 MYOM3Q5VTT5 1437 aa30.62■■■□□ 2.49
UPF3A-211ENST00000618700 EFCAB2Q5VUJ9 269 aa30.58■■■□□ 2.49
UPF3A-211ENST00000618700 PPARGC1BQ86YN6 1023 aaKnown RBP30.58■■■□□ 2.49
UPF3A-211ENST00000618700 AKNAQ7Z591 1439 aa30.56■■■□□ 2.48
UPF3A-211ENST00000618700 CFDP1Q9UEE9 299 aaPredicted RBP30.56■■■□□ 2.48
UPF3A-211ENST00000618700 SAMD9LQ8IVG5 1584 aa30.55■■■□□ 2.48
UPF3A-211ENST00000618700 MIA2Q96PC5 1412 aa30.55■■■□□ 2.48
UPF3A-211ENST00000618700 ABCC1P33527 1531 aa30.52■■■□□ 2.48
UPF3A-211ENST00000618700 ADGRL1O94910 1474 aa30.5■■■□□ 2.47
UPF3A-211ENST00000618700 FGD6Q6ZV73 1430 aa30.5■■■□□ 2.47
UPF3A-211ENST00000618700 COL17A1Q9UMD9 1497 aaPredicted RBP30.49■■■□□ 2.47
UPF3A-211ENST00000618700 CAMSAP2Q08AD1 1489 aa30.47■■■□□ 2.47
UPF3A-211ENST00000618700 PLEKHH2Q8IVE3 1493 aa30.46■■■□□ 2.47
UPF3A-211ENST00000618700 ARHGEF12Q9NZN5 1544 aa30.44■■■□□ 2.46
UPF3A-211ENST00000618700 ZNF777Q9ULD5 760 aaPredicted RBP30.44■■■□□ 2.46
UPF3A-211ENST00000618700 SCAPERQ9BY12 1400 aa30.44■■■□□ 2.46
UPF3A-211ENST00000618700 KIAA1107Q9UPP5 1409 aa30.44■■■□□ 2.46
UPF3A-211ENST00000618700 ZNF644Q9H582 1327 aaPredicted RBP30.44■■■□□ 2.46
UPF3A-211ENST00000618700 PTPN23Q9H3S7 1636 aa30.44■■■□□ 2.46
UPF3A-211ENST00000618700 SYCP2Q9BX26 1530 aa30.43■■■□□ 2.46
UPF3A-211ENST00000618700 FRMPD1Q5SYB0 1578 aa30.43■■■□□ 2.46
UPF3A-211ENST00000618700 TCOF1Q13428 1488 aaKnown RBP30.43■■■□□ 2.46
UPF3A-211ENST00000618700 DENND4BO75064 1496 aaPredicted RBP30.42■■■□□ 2.46
UPF3A-211ENST00000618700 POGZQ7Z3K3 1410 aa30.41■■■□□ 2.46
UPF3A-211ENST00000618700 RICTORQ6R327 1708 aa30.41■■■□□ 2.46
UPF3A-211ENST00000618700 PPP4R3CPQ6ZMV5 832 aa30.39■■■□□ 2.46
UPF3A-211ENST00000618700 MBD5Q9P267 1494 aa30.38■■■□□ 2.45
UPF3A-211ENST00000618700 TRAPPC8Q9Y2L5 1435 aa30.35■■■□□ 2.45
UPF3A-211ENST00000618700 ZNF518AQ6AHZ1 1483 aa30.35■■■□□ 2.45
UPF3A-211ENST00000618700 KDM5CP41229 1560 aa30.34■■■□□ 2.45
UPF3A-211ENST00000618700 ARHGEF5Q12774 1597 aa30.33■■■□□ 2.45
UPF3A-211ENST00000618700 RRBP1Q9P2E9 1410 aaKnown RBP30.33■■■□□ 2.45
UPF3A-211ENST00000618700 RAPGEF3O95398 923 aa30.33■■■□□ 2.45
UPF3A-211ENST00000618700 ZMYM4Q5VZL5 1548 aa30.32■■■□□ 2.44
UPF3A-211ENST00000618700 HNRNPMP52272 730 aaKnown RBP eCLIP30.31■■■□□ 2.44
UPF3A-211ENST00000618700 CCDC141Q6ZP82 1450 aa30.29■■■□□ 2.44
UPF3A-211ENST00000618700 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP30.27■■■□□ 2.44
UPF3A-211ENST00000618700 SCAF1Q9H7N4 1312 aaKnown RBP30.25■■■□□ 2.43
UPF3A-211ENST00000618700 AFAP1Q8N556 730 aa30.25■■■□□ 2.43
UPF3A-211ENST00000618700 DNMT1P26358 1616 aaKnown RBP30.25■■■□□ 2.43
UPF3A-211ENST00000618700 RSPH4AQ5TD94 716 aa30.22■■■□□ 2.43
UPF3A-211ENST00000618700 HECW2Q9P2P5 1572 aa30.22■■■□□ 2.43
UPF3A-211ENST00000618700 MAGI2Q86UL8 1455 aa30.21■■■□□ 2.43
UPF3A-211ENST00000618700 MLH3Q9UHC1 1453 aa30.21■■■□□ 2.43
UPF3A-211ENST00000618700 MAPK8IP2Q13387 824 aaPredicted RBP30.21■■■□□ 2.43
UPF3A-211ENST00000618700 CROCC2H7BZ55 1655 aa30.2■■■□□ 2.43
UPF3A-211ENST00000618700 INO80Q9ULG1 1556 aaPredicted RBP30.2■■■□□ 2.43
UPF3A-211ENST00000618700 FAM50AQ14320 339 aaKnown RBP30.2■■■□□ 2.43
UPF3A-211ENST00000618700 ABCC5O15440 1437 aa30.2■■■□□ 2.42
UPF3A-211ENST00000618700 DAPK1P53355 1430 aa30.2■■■□□ 2.42
UPF3A-211ENST00000618700 ZFYVE16Q7Z3T8 1539 aa30.19■■■□□ 2.42
UPF3A-211ENST00000618700 MAST1Q9Y2H9 1570 aa30.18■■■□□ 2.42
UPF3A-211ENST00000618700 SHANK2Q9UPX8 1470 aa30.18■■■□□ 2.42
UPF3A-211ENST00000618700 ARHGEF40Q8TER5 1519 aa30.17■■■□□ 2.42
UPF3A-211ENST00000618700 KIDINS220Q9ULH0 1771 aa30.16■■■□□ 2.42
UPF3A-211ENST00000618700 ATP7AQ04656 1500 aa30.16■■■□□ 2.42
UPF3A-211ENST00000618700 SPAG9O60271 1321 aaKnown RBP30.15■■■□□ 2.42
UPF3A-211ENST00000618700 RTEL1-TNFRSF6BF6WH68 1400 aa30.13■■■□□ 2.41
UPF3A-211ENST00000618700 YEATS2Q9ULM3 1422 aa30.13■■■□□ 2.41
UPF3A-211ENST00000618700 C9orf84Q5VXU9 1444 aa30.13■■■□□ 2.41
UPF3A-211ENST00000618700 ABCA6Q8N139 1617 aa30.11■■■□□ 2.41
UPF3A-211ENST00000618700 DIP2CQ9Y2E4 1556 aa30.1■■■□□ 2.41
UPF3A-211ENST00000618700 TSPY4P0CV99 314 aa30.08■■■□□ 2.41
UPF3A-211ENST00000618700 TSPY10P0CW01 314 aa30.08■■■□□ 2.41
UPF3A-211ENST00000618700 PTPRKQ15262 1439 aa30.07■■■□□ 2.4
UPF3A-211ENST00000618700 PLXNC1O60486 1568 aa30.06■■■□□ 2.4
UPF3A-211ENST00000618700 ADGRL2O95490 1459 aa30.04■■■□□ 2.4
UPF3A-211ENST00000618700 ADGBQ8N7X0 1667 aa30.02■■■□□ 2.4
UPF3A-211ENST00000618700 REREQ9P2R6 1566 aa30.02■■■□□ 2.4
UPF3A-211ENST00000618700 ATP10AO60312 1499 aa30.01■■■□□ 2.4
UPF3A-211ENST00000618700 MYT1LQ9UL68 1186 aa30■■■□□ 2.39
UPF3A-211ENST00000618700 NCOA1Q15788 1441 aa29.96■■■□□ 2.39
UPF3A-211ENST00000618700 ROCK1Q13464 1354 aa29.95■■■□□ 2.39
UPF3A-211ENST00000618700 ANKRD30AQ9BXX3 1397 aa29.95■■■□□ 2.39
UPF3A-211ENST00000618700 CHIC2Q9UKJ5 165 aa29.95■■■□□ 2.39
UPF3A-211ENST00000618700 SIGLEC1Q9BZZ2 1709 aa29.95■■■□□ 2.38
UPF3A-211ENST00000618700 A2MP01023 1474 aa29.94■■■□□ 2.38
UPF3A-211ENST00000618700 ITGAEP38570 1179 aa29.94■■■□□ 2.38
UPF3A-211ENST00000618700 KIF15Q9NS87 1388 aa29.93■■■□□ 2.38
UPF3A-211ENST00000618700 DUOX2Q9NRD8 1548 aa29.91■■■□□ 2.38
UPF3A-211ENST00000618700 AGLP35573 1532 aa29.9■■■□□ 2.38
UPF3A-211ENST00000618700 DHX29Q7Z478 1369 aaKnown RBP29.89■■■□□ 2.37
UPF3A-211ENST00000618700 KDM4FA0A1W2PPD8 638 aa29.88■■■□□ 2.37
UPF3A-211ENST00000618700 RRP7BPQ9NSQ0 103 aa29.86■■■□□ 2.37
UPF3A-211ENST00000618700 BCORL1Q5H9F3 1711 aa29.84■■■□□ 2.37
UPF3A-211ENST00000618700 ERBINQ96RT1 1412 aa29.83■■■□□ 2.37
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms