RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 BCL11BQ9C0K0 894 aaPredicted RBP11.85□□□□□ -0.51
LINC00540-201ENST00000611481 ERBB3P21860 1342 aa11.85□□□□□ -0.51
LINC00540-201ENST00000611481 ZSWIM6Q9HCJ5 1215 aa11.82□□□□□ -0.52
LINC00540-201ENST00000611481 STK24Q9Y6E0 443 aa11.82□□□□□ -0.52
LINC00540-201ENST00000611481 ECM2O94769 699 aaPredicted RBP11.79□□□□□ -0.52
LINC00540-201ENST00000611481 FBXO22Q8NEZ5 403 aa11.79□□□□□ -0.52
LINC00540-201ENST00000611481 STK25O00506 426 aa11.77□□□□□ -0.53
LINC00540-201ENST00000611481 VARS2Q5ST30 1063 aaKnown RBP11.76□□□□□ -0.53
LINC00540-201ENST00000611481 GPR153Q6NV75 609 aa11.75□□□□□ -0.53
LINC00540-201ENST00000611481 MFRPQ9BY79 579 aa11.75□□□□□ -0.53
LINC00540-201ENST00000611481 PKD2Q13563 968 aa11.69□□□□□ -0.54
LINC00540-201ENST00000611481 ZNF687Q8N1G0 1237 aa11.69□□□□□ -0.54
LINC00540-201ENST00000611481 RGL2O15211 777 aa11.68□□□□□ -0.54
LINC00540-201ENST00000611481 ARSIQ5FYB1 569 aa11.68□□□□□ -0.54
LINC00540-201ENST00000611481 C2orf72A6NCS6 295 aa11.63□□□□□ -0.55
LINC00540-201ENST00000611481 KIF3CO14782 793 aa11.63□□□□□ -0.55
LINC00540-201ENST00000611481 ZNF316A6NFI3 1004 aaPredicted RBP11.61□□□□□ -0.55
LINC00540-201ENST00000611481 KHSRPQ92945 711 aaKnown RBP eCLIP11.6□□□□□ -0.55
LINC00540-201ENST00000611481 RNF166Q96A37 237 aaPredicted RBP11.59□□□□□ -0.55
LINC00540-201ENST00000611481 TMC2Q8TDI7 906 aa11.58□□□□□ -0.56
LINC00540-201ENST00000611481 MYT1LQ9UL68 1186 aa11.57□□□□□ -0.56
LINC00540-201ENST00000611481 SLC34A2O95436 690 aa11.55□□□□□ -0.56
LINC00540-201ENST00000611481 PTGER2P43116 358 aa11.55□□□□□ -0.56
LINC00540-201ENST00000611481 NUDT7P0C024 238 aa11.53□□□□□ -0.56
LINC00540-201ENST00000611481 PPP1R37O75864 691 aa11.52□□□□□ -0.57
LINC00540-201ENST00000611481 ANKRD13DQ6ZTN6 518 aa11.52□□□□□ -0.57
LINC00540-201ENST00000611481 PCDHGA4Q9Y5G9 962 aa11.52□□□□□ -0.57
LINC00540-201ENST00000611481 LSM11P83369 360 aaKnown RBP eCLIP11.49□□□□□ -0.57
LINC00540-201ENST00000611481 PBX2P40425 430 aa11.48□□□□□ -0.57
LINC00540-201ENST00000611481 LHX6Q9UPM6 363 aa11.47□□□□□ -0.57
LINC00540-201ENST00000611481 HS6ST3Q8IZP7 471 aa11.46□□□□□ -0.57
LINC00540-201ENST00000611481 PSDA5PKW4 1024 aaPredicted RBP11.41□□□□□ -0.58
LINC00540-201ENST00000611481 FOXK1P85037 733 aa11.39□□□□□ -0.59
LINC00540-201ENST00000611481 PTCD2Q8WV60 388 aaKnown RBP11.39□□□□□ -0.59
LINC00540-201ENST00000611481 GPHNQ9NQX3 736 aaPredicted RBP11.39□□□□□ -0.59
LINC00540-201ENST00000611481 AXIN2Q9Y2T1 843 aa11.39□□□□□ -0.59
LINC00540-201ENST00000611481 CHGAP10645 457 aaKnown RBP11.38□□□□□ -0.59
LINC00540-201ENST00000611481 POTEEQ6S8J3 1075 aa11.38□□□□□ -0.59
LINC00540-201ENST00000611481 PLPP6Q8IY26 295 aa11.38□□□□□ -0.59
LINC00540-201ENST00000611481 KDM4FA0A1W2PPD8 638 aa11.35□□□□□ -0.59
LINC00540-201ENST00000611481 ARHGAP33O14559 1287 aa11.35□□□□□ -0.59
LINC00540-201ENST00000611481 TBC1D12O60347 775 aa11.33□□□□□ -0.6
LINC00540-201ENST00000611481 DSG2Q14126 1118 aa11.33□□□□□ -0.6
LINC00540-201ENST00000611481 RYDENQ9NUL5 291 aaKnown RBP11.32□□□□□ -0.6
LINC00540-201ENST00000611481 DNAJC5Q9H3Z4 198 aa11.31□□□□□ -0.6
LINC00540-201ENST00000611481 ADGRD1Q6QNK2 874 aa11.3□□□□□ -0.6
LINC00540-201ENST00000611481 NKX1-1Q15270 411 aaPredicted RBP11.28□□□□□ -0.6
LINC00540-201ENST00000611481 PPP4R3BQ5MIZ7 849 aa11.28□□□□□ -0.6
LINC00540-201ENST00000611481 TK2O00142 265 aa11.26□□□□□ -0.61
LINC00540-201ENST00000611481 HCSTQ9UBK5 93 aa11.25□□□□□ -0.61
LINC00540-201ENST00000611481 PSEN2P49810 448 aa11.24□□□□□ -0.61
LINC00540-201ENST00000611481 DMRTA1Q5VZB9 504 aa11.23□□□□□ -0.61
LINC00540-201ENST00000611481 OXER1Q8TDS5 423 aa11.23□□□□□ -0.61
LINC00540-201ENST00000611481 CRISPLD2Q9H0B8 497 aa11.22□□□□□ -0.61
LINC00540-201ENST00000611481 KCNH8Q96L42 1107 aa11.21□□□□□ -0.61
LINC00540-201ENST00000611481 HRO43593 1189 aa11.2□□□□□ -0.62
LINC00540-201ENST00000611481 PPP1R15BQ5SWA1 713 aa11.19□□□□□ -0.62
LINC00540-201ENST00000611481 UPF1Q92900 1129 aaKnown RBP eCLIP11.19□□□□□ -0.62
LINC00540-201ENST00000611481 STAC3Q96MF2 364 aa11.18□□□□□ -0.62
LINC00540-201ENST00000611481 KCNK17Q96T54 332 aa11.18□□□□□ -0.62
LINC00540-201ENST00000611481 PDE4AP27815 886 aa11.17□□□□□ -0.62
LINC00540-201ENST00000611481 PLA2G2EQ9NZK7 142 aa11.16□□□□□ -0.62
LINC00540-201ENST00000611481 ZNF454Q8N9F8 522 aa11.15□□□□□ -0.62
LINC00540-201ENST00000611481 NCKAP5LQ9HCH0 1330 aa11.13□□□□□ -0.63
LINC00540-201ENST00000611481 NISCHQ9Y2I1 1504 aa11.13□□□□□ -0.63
LINC00540-201ENST00000611481 GTPBP6O43824 516 aaPredicted RBP11.11□□□□□ -0.63
LINC00540-201ENST00000611481 KCTD12Q96CX2 325 aaKnown RBP11.11□□□□□ -0.63
LINC00540-201ENST00000611481 BCL2L12Q9HB09 334 aa11.11□□□□□ -0.63
LINC00540-201ENST00000611481 VPS9D1Q9Y2B5 631 aa11.11□□□□□ -0.63
LINC00540-201ENST00000611481 ABCC9O60706 1549 aa11.1□□□□□ -0.63
LINC00540-201ENST00000611481 FOSBP53539 338 aa11.1□□□□□ -0.63
LINC00540-201ENST00000611481 LARP6Q9BRS8 491 aaKnown RBP11.08□□□□□ -0.64
LINC00540-201ENST00000611481 SLC4A5Q9BY07 1137 aa11.08□□□□□ -0.64
LINC00540-201ENST00000611481 ANO8Q9HCE9 1232 aaPredicted RBP11.08□□□□□ -0.64
LINC00540-201ENST00000611481 PTPREP23469 700 aa11.07□□□□□ -0.64
LINC00540-201ENST00000611481 DDX27Q96GQ7 796 aaKnown RBP11.07□□□□□ -0.64
LINC00540-201ENST00000611481 EVI5O60447 810 aa11.06□□□□□ -0.64
LINC00540-201ENST00000611481 JPH4Q96JJ6 628 aa11.06□□□□□ -0.64
LINC00540-201ENST00000611481 DCAF8L2P0C7V8 631 aa11.03□□□□□ -0.64
LINC00540-201ENST00000611481 MAP3K9P80192 1104 aa11.02□□□□□ -0.65
LINC00540-201ENST00000611481 MFSD10Q14728 455 aa11.02□□□□□ -0.65
LINC00540-201ENST00000611481 ZDHHC16Q969W1 377 aa11.02□□□□□ -0.65
LINC00540-201ENST00000611481 ZBED2Q9BTP6 218 aa11.01□□□□□ -0.65
LINC00540-201ENST00000611481 BHMG1C9JSJ3 638 aaPredicted RBP11□□□□□ -0.65
LINC00540-201ENST00000611481 ADAM33Q9BZ11 813 aa11□□□□□ -0.65
LINC00540-201ENST00000611481 PTPN5P54829 565 aa10.99□□□□□ -0.65
LINC00540-201ENST00000611481 GOLGA8CPA6NN73 597 aa10.98□□□□□ -0.65
LINC00540-201ENST00000611481 MRPL50Q8N5N7 158 aaKnown RBP10.97□□□□□ -0.65
LINC00540-201ENST00000611481 EMILIN3Q9NT22 766 aa10.96□□□□□ -0.65
LINC00540-201ENST00000611481 THSD4Q6ZMP0 1018 aa10.95□□□□□ -0.66
LINC00540-201ENST00000611481 NBPF3Q9H094 633 aa10.95□□□□□ -0.66
LINC00540-201ENST00000611481 WNT2BQ93097 391 aa10.94□□□□□ -0.66
LINC00540-201ENST00000611481 PCDHGA10Q9Y5H3 936 aa10.92□□□□□ -0.66
LINC00540-201ENST00000611481 PPP1R3GB7ZBB8 358 aa10.91□□□□□ -0.66
LINC00540-201ENST00000611481 CADPS2Q86UW7 1296 aa10.91□□□□□ -0.66
LINC00540-201ENST00000611481 FBXW7Q969H0 707 aa10.9□□□□□ -0.66
LINC00540-201ENST00000611481 IFFO2Q5TF58 517 aa10.89□□□□□ -0.67
LINC00540-201ENST00000611481 TYW1BQ6NUM6 668 aa10.89□□□□□ -0.67
LINC00540-201ENST00000611481 PHF14O94880 888 aa10.88□□□□□ -0.67
LINC00540-201ENST00000611481 RABGEF1Q9UJ41 708 aa10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms