RNA–Protein interactions for RNA: ENST00000600343.5

NFKB1-212, Transcript of nuclear factor kappa B subunit 1, humanhuman

TSL 2 BASIC

Gene NFKB1, Length 4,010 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NFKB1-212ENST00000600343 PRDM10Q9NQV6 1147 aa12.77□□□□□ -0.37
NFKB1-212ENST00000600343 FAM13BQ9NYF5 915 aa12.77□□□□□ -0.37
NFKB1-212ENST00000600343 TONSLQ96HA7 1378 aa12.76□□□□□ -0.37
NFKB1-212ENST00000600343 SETD5Q9C0A6 1442 aa12.76□□□□□ -0.37
NFKB1-212ENST00000600343 ERBB4Q15303 1308 aa12.76□□□□□ -0.37
NFKB1-212ENST00000600343 TRIM44Q96DX7 344 aaPredicted RBP12.76□□□□□ -0.37
NFKB1-212ENST00000600343 FSD2A1L4K1 749 aa12.75□□□□□ -0.37
NFKB1-212ENST00000600343 MYH16Q9H6N6 1097 aa12.75□□□□□ -0.37
NFKB1-212ENST00000600343 UTP14CQ5TAP6 766 aaKnown RBP12.74□□□□□ -0.37
NFKB1-212ENST00000600343 PLCD3Q8N3E9 789 aa12.74□□□□□ -0.37
NFKB1-212ENST00000600343 ARID3AQ99856 593 aa12.74□□□□□ -0.37
NFKB1-212ENST00000600343 CNTLNQ9NXG0 1405 aa12.74□□□□□ -0.37
NFKB1-212ENST00000600343 RRP1P56182 461 aaKnown RBP12.74□□□□□ -0.37
NFKB1-212ENST00000600343 SKAP1Q86WV1 359 aa12.74□□□□□ -0.37
NFKB1-212ENST00000600343 TNNT2P45379 298 aaPredicted RBP12.73□□□□□ -0.37
NFKB1-212ENST00000600343 DMTNQ08495 405 aa12.73□□□□□ -0.37
NFKB1-212ENST00000600343 ANP32BQ92688 251 aaKnown RBP12.73□□□□□ -0.37
NFKB1-212ENST00000600343 PPP4R3BQ5MIZ7 849 aa12.72□□□□□ -0.37
NFKB1-212ENST00000600343 RIPK4P57078 832 aa12.72□□□□□ -0.37
NFKB1-212ENST00000600343 TMEM51Q9NW97 253 aa12.72□□□□□ -0.37
NFKB1-212ENST00000600343 VGLL3A8MV65 326 aa12.72□□□□□ -0.37
NFKB1-212ENST00000600343 MRE11P49959 708 aa12.72□□□□□ -0.37
NFKB1-212ENST00000600343 FOXD1Q16676 465 aa12.71□□□□□ -0.37
NFKB1-212ENST00000600343 GZF1Q9H116 711 aaPredicted RBP12.71□□□□□ -0.37
NFKB1-212ENST00000600343 ZNF830Q96NB3 372 aaPredicted RBP12.71□□□□□ -0.38
NFKB1-212ENST00000600343 FTSJ3Q8IY81 847 aaKnown RBP12.7□□□□□ -0.38
NFKB1-212ENST00000600343 NCBP3Q53F19 620 aaKnown RBP12.7□□□□□ -0.38
NFKB1-212ENST00000600343 FHAD1B1AJZ9 1412 aa12.69□□□□□ -0.38
NFKB1-212ENST00000600343 SENP3-EIF4A1A0A087X0R7 540 aa12.69□□□□□ -0.38
NFKB1-212ENST00000600343 FAM161AQ3B820 660 aa12.68□□□□□ -0.38
NFKB1-212ENST00000600343 MTERF4Q7Z6M4 381 aaKnown RBP12.68□□□□□ -0.38
NFKB1-212ENST00000600343 SLKQ9H2G2 1235 aaPredicted RBP12.68□□□□□ -0.38
NFKB1-212ENST00000600343 ZFP91Q96JP5 570 aaPredicted RBP12.67□□□□□ -0.38
NFKB1-212ENST00000600343 HSPA5P11021 654 aaKnown RBP12.67□□□□□ -0.38
NFKB1-212ENST00000600343 NCOA2Q15596 1464 aa12.66□□□□□ -0.38
NFKB1-212ENST00000600343 WIZO95785 1651 aa12.66□□□□□ -0.38
NFKB1-212ENST00000600343 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.66□□□□□ -0.38
NFKB1-212ENST00000600343 BRD2P25440 801 aaKnown RBP12.66□□□□□ -0.38
NFKB1-212ENST00000600343 TERF1P54274 439 aa12.66□□□□□ -0.38
NFKB1-212ENST00000600343 MROH2BQ7Z745 1585 aa12.66□□□□□ -0.38
NFKB1-212ENST00000600343 SCRIBQ14160 1630 aa12.66□□□□□ -0.38
NFKB1-212ENST00000600343 GRPEL1Q9HAV7 217 aa12.66□□□□□ -0.38
NFKB1-212ENST00000600343 OFD1O75665 1012 aa12.65□□□□□ -0.38
NFKB1-212ENST00000600343 DHX37Q8IY37 1157 aaKnown RBP12.64□□□□□ -0.39
NFKB1-212ENST00000600343 C8orf34Q49A92 452 aa12.64□□□□□ -0.39
NFKB1-212ENST00000600343 ZSCAN20P17040 1043 aaPredicted RBP12.63□□□□□ -0.39
NFKB1-212ENST00000600343 CDK11BP21127 795 aaKnown RBP12.63□□□□□ -0.39
NFKB1-212ENST00000600343 BECN1Q14457 450 aa12.63□□□□□ -0.39
NFKB1-212ENST00000600343 RCAN3Q9UKA8 241 aa12.63□□□□□ -0.39
NFKB1-212ENST00000600343 KIF20AO95235 890 aa12.63□□□□□ -0.39
NFKB1-212ENST00000600343 R3HCC1Q9Y3T6 440 aaKnown RBP12.62□□□□□ -0.39
NFKB1-212ENST00000600343 CECR2Q9BXF3 1484 aa12.62□□□□□ -0.39
NFKB1-212ENST00000600343 AMER1Q5JTC6 1135 aaPredicted RBP12.61□□□□□ -0.39
NFKB1-212ENST00000600343 TEX2Q8IWB9 1127 aa12.6□□□□□ -0.39
NFKB1-212ENST00000600343 KTN1Q86UP2 1357 aaKnown RBP12.6□□□□□ -0.39
NFKB1-212ENST00000600343 RAPGEF2Q9Y4G8 1499 aa12.6□□□□□ -0.39
NFKB1-212ENST00000600343 UQCRHLA0A096LP55 91 aa12.6□□□□□ -0.39
NFKB1-212ENST00000600343 UQCRHP07919 91 aa12.6□□□□□ -0.39
NFKB1-212ENST00000600343 EIF4G2P78344 907 aaKnown RBP eCLIP12.6□□□□□ -0.39
NFKB1-212ENST00000600343 GTPBP4Q9BZE4 634 aaKnown RBP12.59□□□□□ -0.39
NFKB1-212ENST00000600343 MSNP26038 577 aaKnown RBP12.59□□□□□ -0.39
NFKB1-212ENST00000600343 LETM1O95202 739 aaPredicted RBP12.59□□□□□ -0.39
NFKB1-212ENST00000600343 CCDC94Q9BW85 323 aaPredicted RBP12.59□□□□□ -0.39
NFKB1-212ENST00000600343 ERICH3Q5RHP9 1530 aa12.59□□□□□ -0.39
NFKB1-212ENST00000600343 ISY1Q9ULR0 285 aaKnown RBP12.58□□□□□ -0.4
NFKB1-212ENST00000600343 BAZ1AQ9NRL2 1556 aaPredicted RBP12.58□□□□□ -0.4
NFKB1-212ENST00000600343 MCM4P33991 863 aa12.58□□□□□ -0.4
NFKB1-212ENST00000600343 SECISBP2LQ93073 1101 aaKnown RBP12.58□□□□□ -0.4
NFKB1-212ENST00000600343 TRAK2O60296 914 aa12.58□□□□□ -0.4
NFKB1-212ENST00000600343 ZSCAN30Q86W11 494 aa12.58□□□□□ -0.4
NFKB1-212ENST00000600343 DNTTIP2Q5QJE6 756 aaKnown RBP12.57□□□□□ -0.4
NFKB1-212ENST00000600343 ARAP1Q96P48 1450 aa12.57□□□□□ -0.4
NFKB1-212ENST00000600343 CCDC7Q96M83 1385 aa12.57□□□□□ -0.4
NFKB1-212ENST00000600343 CHMP4AQ9BY43 222 aa12.56□□□□□ -0.4
NFKB1-212ENST00000600343 DYNC1I1O14576 645 aa12.56□□□□□ -0.4
NFKB1-212ENST00000600343 TAF3Q5VWG9 929 aa12.56□□□□□ -0.4
NFKB1-212ENST00000600343 CRBNQ96SW2 442 aa12.55□□□□□ -0.4
NFKB1-212ENST00000600343 FAM50AQ14320 339 aaKnown RBP12.55□□□□□ -0.4
NFKB1-212ENST00000600343 ANTXR1Q9H6X2 564 aa12.55□□□□□ -0.4
NFKB1-212ENST00000600343 CENPQQ7L2Z9 268 aaPredicted RBP12.53□□□□□ -0.4
NFKB1-212ENST00000600343 PLIN1O60240 522 aa12.53□□□□□ -0.4
NFKB1-212ENST00000600343 CHRM1P11229 460 aaPredicted RBP12.53□□□□□ -0.4
NFKB1-212ENST00000600343 IRX3P78415 501 aaPredicted RBP12.52□□□□□ -0.41
NFKB1-212ENST00000600343 MAP3K1Q13233 1512 aa12.52□□□□□ -0.41
NFKB1-212ENST00000600343 ZBTB22O15209 634 aa12.52□□□□□ -0.41
NFKB1-212ENST00000600343 CCDC173Q0VFZ6 552 aa12.52□□□□□ -0.41
NFKB1-212ENST00000600343 NCOA1Q15788 1441 aa12.51□□□□□ -0.41
NFKB1-212ENST00000600343 KDM2BQ8NHM5 1336 aa12.51□□□□□ -0.41
NFKB1-212ENST00000600343 SYNJ1O43426 1573 aa12.51□□□□□ -0.41
NFKB1-212ENST00000600343 CGNQ9P2M7 1197 aaKnown RBP12.51□□□□□ -0.41
NFKB1-212ENST00000600343 CBX1P83916 185 aa12.5□□□□□ -0.41
NFKB1-212ENST00000600343 MAPK8IP2Q13387 824 aaPredicted RBP12.5□□□□□ -0.41
NFKB1-212ENST00000600343 TMC1Q8TDI8 760 aa12.5□□□□□ -0.41
NFKB1-212ENST00000600343 E9PSI1 815 aa12.49□□□□□ -0.41
NFKB1-212ENST00000600343 PHLDB1Q86UU1 1377 aa12.49□□□□□ -0.41
NFKB1-212ENST00000600343 PNISRQ8TF01 805 aaKnown RBP12.48□□□□□ -0.41
NFKB1-212ENST00000600343 USP19O94966 1318 aa12.48□□□□□ -0.41
NFKB1-212ENST00000600343 VGFO15240 615 aaPredicted RBP12.47□□□□□ -0.41
NFKB1-212ENST00000600343 SPRYD3Q8NCJ5 442 aa12.47□□□□□ -0.41
NFKB1-212ENST00000600343 RGS22Q8NE09 1264 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms