RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 SPAG9O60271 1321 aaKnown RBP26.12■■□□□ 1.77
UPF1-207ENST00000599848 GOLGA6L4A6NEF3 574 aa26.11■■□□□ 1.77
UPF1-207ENST00000599848 FRAT1Q92837 279 aaPredicted RBP26.11■■□□□ 1.77
UPF1-207ENST00000599848 CLSTN1O94985 981 aa26.1■■□□□ 1.77
UPF1-207ENST00000599848 ANKRD30AQ9BXX3 1397 aa26.1■■□□□ 1.77
UPF1-207ENST00000599848 TERF2IPQ9NYB0 399 aa26.09■■□□□ 1.77
UPF1-207ENST00000599848 FMN1Q68DA7 1419 aa26.08■■□□□ 1.77
UPF1-207ENST00000599848 STK26Q9P289 416 aa26.07■■□□□ 1.76
UPF1-207ENST00000599848 SOGA1O94964 1423 aa26.06■■□□□ 1.76
UPF1-207ENST00000599848 HIRIP3Q9BW71 556 aaPredicted RBP26.05■■□□□ 1.76
UPF1-207ENST00000599848 CC2D1BQ5T0F9 858 aaKnown RBP26.04■■□□□ 1.76
UPF1-207ENST00000599848 ARHGAP35Q9NRY4 1499 aa26.02■■□□□ 1.76
UPF1-207ENST00000599848 NGDNQ8NEJ9 315 aaKnown RBP26.01■■□□□ 1.76
UPF1-207ENST00000599848 STK31Q9BXU1 1019 aa26.01■■□□□ 1.76
UPF1-207ENST00000599848 GNL2Q13823 731 aaKnown RBP26.01■■□□□ 1.75
UPF1-207ENST00000599848 KIAA1211Q6ZU35 1233 aa26.01■■□□□ 1.75
UPF1-207ENST00000599848 SAFB2Q14151 953 aaKnown RBP eCLIP26.01■■□□□ 1.75
UPF1-207ENST00000599848 CCDC34Q96HJ3 373 aa26■■□□□ 1.75
UPF1-207ENST00000599848 TAF7LQ5H9L4 462 aa26■■□□□ 1.75
UPF1-207ENST00000599848 DCAF8L1A6NGE4 600 aa25.99■■□□□ 1.75
UPF1-207ENST00000599848 LMOD3Q0VAK6 560 aa25.99■■□□□ 1.75
UPF1-207ENST00000599848 CHAF1AQ13111 956 aaPredicted RBP25.99■■□□□ 1.75
UPF1-207ENST00000599848 WASHC2CQ9Y4E1 1318 aa25.99■■□□□ 1.75
UPF1-207ENST00000599848 CECR2Q9BXF3 1484 aa25.98■■□□□ 1.75
UPF1-207ENST00000599848 HSP90AB1P08238 724 aaKnown RBP25.98■■□□□ 1.75
UPF1-207ENST00000599848 GORABQ5T7V8 394 aa25.98■■□□□ 1.75
UPF1-207ENST00000599848 ZNF330Q9Y3S2 320 aaPredicted RBP25.97■■□□□ 1.75
UPF1-207ENST00000599848 GPATCH3Q96I76 525 aa25.97■■□□□ 1.75
UPF1-207ENST00000599848 KIF3BO15066 747 aa25.97■■□□□ 1.75
UPF1-207ENST00000599848 HTATSF1O43719 755 aaKnown RBP25.96■■□□□ 1.75
UPF1-207ENST00000599848 GTF2E1P29083 439 aaPredicted RBP25.95■■□□□ 1.74
UPF1-207ENST00000599848 PKD2Q13563 968 aa25.94■■□□□ 1.74
UPF1-207ENST00000599848 KTN1Q86UP2 1357 aaKnown RBP25.94■■□□□ 1.74
UPF1-207ENST00000599848 KIAA2012Q0VF49 1180 aa25.91■■□□□ 1.74
UPF1-207ENST00000599848 OSCARQ8IYS5 282 aa25.9■■□□□ 1.74
UPF1-207ENST00000599848 TAOK2Q9UL54 1235 aa25.9■■□□□ 1.74
UPF1-207ENST00000599848 DNTTIP2Q5QJE6 756 aaKnown RBP25.89■■□□□ 1.73
UPF1-207ENST00000599848 NUP155O75694 1391 aa25.88■■□□□ 1.73
UPF1-207ENST00000599848 AMPHP49418 695 aa25.87■■□□□ 1.73
UPF1-207ENST00000599848 UACAQ9BZF9 1416 aa25.87■■□□□ 1.73
UPF1-207ENST00000599848 HMMRO75330 724 aa25.86■■□□□ 1.73
UPF1-207ENST00000599848 HSCBQ8IWL3 235 aa25.86■■□□□ 1.73
UPF1-207ENST00000599848 NBR1Q14596 966 aa25.85■■□□□ 1.73
UPF1-207ENST00000599848 U2AF1L5P0DN76 240 aaPredicted RBP25.84■■□□□ 1.73
UPF1-207ENST00000599848 IRX6P78412 446 aaPredicted RBP25.84■■□□□ 1.73
UPF1-207ENST00000599848 U2AF1Q01081 240 aaKnown RBP eCLIP25.84■■□□□ 1.734e-10■■■■■ 35.3
UPF1-207ENST00000599848 CCDC18Q5T9S5 1454 aa25.83■■□□□ 1.73
UPF1-207ENST00000599848 MEX3CQ5U5Q3 659 aaKnown RBP25.83■■□□□ 1.73
UPF1-207ENST00000599848 ROCK2O75116 1388 aaKnown RBP25.82■■□□□ 1.72
UPF1-207ENST00000599848 TDRD9Q8NDG6 1382 aaKnown RBP25.81■■□□□ 1.72
UPF1-207ENST00000599848 EVA1CP58658 441 aa25.81■■□□□ 1.72
UPF1-207ENST00000599848 RALBP1Q15311 655 aa25.8■■□□□ 1.72
UPF1-207ENST00000599848 ABCC8Q09428 1581 aa25.8■■□□□ 1.72
UPF1-207ENST00000599848 RGS3P49796 1198 aa25.8■■□□□ 1.72
UPF1-207ENST00000599848 CHMP4CQ96CF2 233 aa25.8■■□□□ 1.72
UPF1-207ENST00000599848 SETD5Q9C0A6 1442 aa25.79■■□□□ 1.72
UPF1-207ENST00000599848 PPP4R2Q9NY27 417 aa25.79■■□□□ 1.72
UPF1-207ENST00000599848 FOXD1Q16676 465 aa25.79■■□□□ 1.72
UPF1-207ENST00000599848 ANO8Q9HCE9 1232 aaPredicted RBP25.79■■□□□ 1.72
UPF1-207ENST00000599848 CADPSQ9ULU8 1353 aa25.78■■□□□ 1.72
UPF1-207ENST00000599848 PTMSP20962 102 aa25.77■■□□□ 1.72
UPF1-207ENST00000599848 FRAT2O75474 233 aaPredicted RBP25.77■■□□□ 1.72
UPF1-207ENST00000599848 MIER1Q8N108 512 aa25.77■■□□□ 1.72
UPF1-207ENST00000599848 WASHC2AQ641Q2 1341 aa25.77■■□□□ 1.72
UPF1-207ENST00000599848 PLCB2Q00722 1185 aa25.76■■□□□ 1.71
UPF1-207ENST00000599848 CHMP3Q9Y3E7 222 aa25.76■■□□□ 1.71
UPF1-207ENST00000599848 JPH4Q96JJ6 628 aa25.76■■□□□ 1.71
UPF1-207ENST00000599848 VGFO15240 615 aaPredicted RBP25.74■■□□□ 1.71
UPF1-207ENST00000599848 TPRNQ4KMQ1 711 aa25.72■■□□□ 1.71
UPF1-207ENST00000599848 ABCF1Q8NE71 845 aaKnown RBP eCLIP25.72■■□□□ 1.71
UPF1-207ENST00000599848 RWDD1Q9H446 243 aaPredicted RBP25.72■■□□□ 1.71
UPF1-207ENST00000599848 SIN3AQ96ST3 1273 aa25.72■■□□□ 1.71
UPF1-207ENST00000599848 C1orf141Q5JVX7 400 aa25.71■■□□□ 1.71
UPF1-207ENST00000599848 KIF3AQ9Y496 699 aa25.71■■□□□ 1.71
UPF1-207ENST00000599848 NCBP3Q53F19 620 aaKnown RBP25.7■■□□□ 1.71
UPF1-207ENST00000599848 LRRFIP1Q32MZ4 808 aaKnown RBP25.7■■□□□ 1.7
UPF1-207ENST00000599848 NOL10Q9BSC4 688 aaKnown RBP25.68■■□□□ 1.7
UPF1-207ENST00000599848 TPM4P67936 248 aa25.67■■□□□ 1.7
UPF1-207ENST00000599848 ERICH6BQ5W0A0 696 aa25.67■■□□□ 1.7
UPF1-207ENST00000599848 AMOTL1Q8IY63 956 aa25.67■■□□□ 1.7
UPF1-207ENST00000599848 CYB5RLQ6IPT4 315 aa25.67■■□□□ 1.7
UPF1-207ENST00000599848 MSH5O43196 834 aa25.66■■□□□ 1.7
UPF1-207ENST00000599848 PTPRGP23470 1445 aa25.65■■□□□ 1.7
UPF1-207ENST00000599848 VPS8Q8N3P4 1428 aa25.65■■□□□ 1.7
UPF1-207ENST00000599848 MPHOSPH9Q99550 1183 aa25.63■■□□□ 1.69
UPF1-207ENST00000599848 CCER2I3L3R5 266 aa25.62■■□□□ 1.69
UPF1-207ENST00000599848 SUPT16HQ9Y5B9 1047 aaKnown RBP25.62■■□□□ 1.69
UPF1-207ENST00000599848 TRIM34Q9BYJ4 488 aa25.61■■□□□ 1.69
UPF1-207ENST00000599848 CTDP1Q9Y5B0 961 aaPredicted RBP25.61■■□□□ 1.69
UPF1-207ENST00000599848 CSPP1Q1MSJ5 1256 aa25.6■■□□□ 1.69
UPF1-207ENST00000599848 COG3Q96JB2 828 aa25.6■■□□□ 1.69
UPF1-207ENST00000599848 MARCH6O60337 910 aa25.6■■□□□ 1.69
UPF1-207ENST00000599848 TTC5Q8N0Z6 440 aa25.6■■□□□ 1.69
UPF1-207ENST00000599848 PMFBP1Q8TBY8 1022 aa25.6■■□□□ 1.69
UPF1-207ENST00000599848 RAPGEF2Q9Y4G8 1499 aa25.6■■□□□ 1.69
UPF1-207ENST00000599848 HMGB2P26583 209 aaKnown RBP25.59■■□□□ 1.69
UPF1-207ENST00000599848 HNRNPMP52272 730 aaKnown RBP eCLIP25.59■■□□□ 1.698e-16■■■■■ 52.8
UPF1-207ENST00000599848 ITPRIPQ8IWB1 547 aa25.59■■□□□ 1.69
UPF1-207ENST00000599848 PHLDB1Q86UU1 1377 aa25.58■■□□□ 1.69
UPF1-207ENST00000599848 RASSF8Q8NHQ8 419 aa25.58■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms