RNA–Protein interactions for RNA: ENST00000599575.5

SHKBP1-219, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 810 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-219ENST00000599575 PREX2Q70Z35 1606 aa25.74■■□□□ 1.71
SHKBP1-219ENST00000599575 ARHGAP5Q13017 1502 aa25.74■■□□□ 1.71
SHKBP1-219ENST00000599575 AKNAQ7Z591 1439 aa25.74■■□□□ 1.71
SHKBP1-219ENST00000599575 CFDP1Q9UEE9 299 aaPredicted RBP25.73■■□□□ 1.71
SHKBP1-219ENST00000599575 KDM6BO15054 1643 aa25.7■■□□□ 1.71
SHKBP1-219ENST00000599575 ITSN2Q9NZM3 1697 aa25.69■■□□□ 1.7
SHKBP1-219ENST00000599575 CDC42BPAQ5VT25 1732 aa25.68■■□□□ 1.7
SHKBP1-219ENST00000599575 PLEKHH2Q8IVE3 1493 aa25.67■■□□□ 1.7
SHKBP1-219ENST00000599575 CDC42BPBQ9Y5S2 1711 aa25.67■■□□□ 1.7
SHKBP1-219ENST00000599575 ADGRL1O94910 1474 aa25.66■■□□□ 1.7
SHKBP1-219ENST00000599575 MIA2Q96PC5 1412 aa25.66■■□□□ 1.7
SHKBP1-219ENST00000599575 MYOM3Q5VTT5 1437 aa25.65■■□□□ 1.7
SHKBP1-219ENST00000599575 DENND4BO75064 1496 aaPredicted RBP25.65■■□□□ 1.7
SHKBP1-219ENST00000599575 KIAA1107Q9UPP5 1409 aa25.64■■□□□ 1.7
SHKBP1-219ENST00000599575 COL17A1Q9UMD9 1497 aaPredicted RBP25.64■■□□□ 1.69
SHKBP1-219ENST00000599575 SCAPERQ9BY12 1400 aa25.63■■□□□ 1.69
SHKBP1-219ENST00000599575 ZNF777Q9ULD5 760 aaPredicted RBP25.59■■□□□ 1.69
SHKBP1-219ENST00000599575 ABCC1P33527 1531 aa25.58■■□□□ 1.69
SHKBP1-219ENST00000599575 POGZQ7Z3K3 1410 aa25.58■■□□□ 1.69
SHKBP1-219ENST00000599575 RSPH4AQ5TD94 716 aa25.58■■□□□ 1.69
SHKBP1-219ENST00000599575 ZNF518AQ6AHZ1 1483 aa25.57■■□□□ 1.68
SHKBP1-219ENST00000599575 SAMD9LQ8IVG5 1584 aa25.56■■□□□ 1.68
SHKBP1-219ENST00000599575 RAPGEF3O95398 923 aa25.55■■□□□ 1.68
SHKBP1-219ENST00000599575 MAGI2Q86UL8 1455 aa25.53■■□□□ 1.68
SHKBP1-219ENST00000599575 FGD6Q6ZV73 1430 aa25.53■■□□□ 1.68
SHKBP1-219ENST00000599575 CAMSAP2Q08AD1 1489 aa25.51■■□□□ 1.67
SHKBP1-219ENST00000599575 ZMYM4Q5VZL5 1548 aa25.51■■□□□ 1.67
SHKBP1-219ENST00000599575 ARHGEF12Q9NZN5 1544 aa25.5■■□□□ 1.67
SHKBP1-219ENST00000599575 RICTORQ6R327 1708 aa25.49■■□□□ 1.67
SHKBP1-219ENST00000599575 ZNF644Q9H582 1327 aaPredicted RBP25.49■■□□□ 1.67
SHKBP1-219ENST00000599575 FRMPD1Q5SYB0 1578 aa25.48■■□□□ 1.67
SHKBP1-219ENST00000599575 SYCP2Q9BX26 1530 aa25.48■■□□□ 1.67
SHKBP1-219ENST00000599575 MBD5Q9P267 1494 aa25.48■■□□□ 1.67
SHKBP1-219ENST00000599575 KDM5CP41229 1560 aa25.48■■□□□ 1.67
SHKBP1-219ENST00000599575 HNRNPMP52272 730 aaKnown RBP eCLIP25.47■■□□□ 1.67
SHKBP1-219ENST00000599575 TCOF1Q13428 1488 aaKnown RBP25.47■■□□□ 1.67
SHKBP1-219ENST00000599575 TRAPPC8Q9Y2L5 1435 aa25.46■■□□□ 1.67
SHKBP1-219ENST00000599575 AFAP1Q8N556 730 aa25.46■■□□□ 1.67
SHKBP1-219ENST00000599575 MLH3Q9UHC1 1453 aa25.46■■□□□ 1.67
SHKBP1-219ENST00000599575 ARHGEF5Q12774 1597 aa25.44■■□□□ 1.66
SHKBP1-219ENST00000599575 CCDC141Q6ZP82 1450 aa25.42■■□□□ 1.66
SHKBP1-219ENST00000599575 PTPN23Q9H3S7 1636 aa25.42■■□□□ 1.66
SHKBP1-219ENST00000599575 PPARGC1BQ86YN6 1023 aaKnown RBP25.42■■□□□ 1.66
SHKBP1-219ENST00000599575 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP25.42■■□□□ 1.66
SHKBP1-219ENST00000599575 SPAG9O60271 1321 aaKnown RBP25.4■■□□□ 1.66
SHKBP1-219ENST00000599575 RTEL1-TNFRSF6BF6WH68 1400 aa25.39■■□□□ 1.66
SHKBP1-219ENST00000599575 TSPY4P0CV99 314 aa25.39■■□□□ 1.66
SHKBP1-219ENST00000599575 TSPY10P0CW01 314 aa25.39■■□□□ 1.66
SHKBP1-219ENST00000599575 ZFYVE16Q7Z3T8 1539 aa25.37■■□□□ 1.65
SHKBP1-219ENST00000599575 HECW2Q9P2P5 1572 aa25.37■■□□□ 1.65
SHKBP1-219ENST00000599575 ARHGEF40Q8TER5 1519 aa25.35■■□□□ 1.65
SHKBP1-219ENST00000599575 RRBP1Q9P2E9 1410 aaKnown RBP25.35■■□□□ 1.65
SHKBP1-219ENST00000599575 MYT1LQ9UL68 1186 aa25.33■■□□□ 1.65
SHKBP1-219ENST00000599575 FAM50AQ14320 339 aaKnown RBP25.32■■□□□ 1.64
SHKBP1-219ENST00000599575 ATP10AO60312 1499 aa25.32■■□□□ 1.64
SHKBP1-219ENST00000599575 SHANK2Q9UPX8 1470 aa25.32■■□□□ 1.64
SHKBP1-219ENST00000599575 ATP7AQ04656 1500 aa25.31■■□□□ 1.64
SHKBP1-219ENST00000599575 YEATS2Q9ULM3 1422 aa25.3■■□□□ 1.64
SHKBP1-219ENST00000599575 INO80Q9ULG1 1556 aaPredicted RBP25.3■■□□□ 1.64
SHKBP1-219ENST00000599575 ABCC5O15440 1437 aa25.29■■□□□ 1.64
SHKBP1-219ENST00000599575 DAPK1P53355 1430 aa25.29■■□□□ 1.64
SHKBP1-219ENST00000599575 MAST1Q9Y2H9 1570 aa25.29■■□□□ 1.64
SHKBP1-219ENST00000599575 DNMT1P26358 1616 aaKnown RBP25.28■■□□□ 1.64
SHKBP1-219ENST00000599575 C9orf84Q5VXU9 1444 aa25.28■■□□□ 1.64
SHKBP1-219ENST00000599575 REREQ9P2R6 1566 aa25.27■■□□□ 1.64
SHKBP1-219ENST00000599575 KIDINS220Q9ULH0 1771 aa25.26■■□□□ 1.63
SHKBP1-219ENST00000599575 DIP2CQ9Y2E4 1556 aa25.24■■□□□ 1.63
SHKBP1-219ENST00000599575 ABCA6Q8N139 1617 aa25.21■■□□□ 1.63
SHKBP1-219ENST00000599575 ANKRD30AQ9BXX3 1397 aa25.19■■□□□ 1.62
SHKBP1-219ENST00000599575 AGLP35573 1532 aa25.19■■□□□ 1.62
SHKBP1-219ENST00000599575 CROCC2H7BZ55 1655 aa25.19■■□□□ 1.62
SHKBP1-219ENST00000599575 DHX29Q7Z478 1369 aaKnown RBP25.18■■□□□ 1.62
SHKBP1-219ENST00000599575 PLXNC1O60486 1568 aa25.18■■□□□ 1.62
SHKBP1-219ENST00000599575 A2MP01023 1474 aa25.18■■□□□ 1.62
SHKBP1-219ENST00000599575 ADGRL2O95490 1459 aa25.17■■□□□ 1.62
SHKBP1-219ENST00000599575 ADGBQ8N7X0 1667 aa25.17■■□□□ 1.62
SHKBP1-219ENST00000599575 ROCK1Q13464 1354 aa25.16■■□□□ 1.62
SHKBP1-219ENST00000599575 ARID4BQ4LE39 1312 aaPredicted RBP25.15■■□□□ 1.62
SHKBP1-219ENST00000599575 NCOA1Q15788 1441 aa25.14■■□□□ 1.62
SHKBP1-219ENST00000599575 KIF15Q9NS87 1388 aa25.12■■□□□ 1.61
SHKBP1-219ENST00000599575 DUOX2Q9NRD8 1548 aa25.11■■□□□ 1.61
SHKBP1-219ENST00000599575 CHIC2Q9UKJ5 165 aa25.09■■□□□ 1.61
SHKBP1-219ENST00000599575 PTPRKQ15262 1439 aa25.09■■□□□ 1.61
SHKBP1-219ENST00000599575 PPP6R1Q9UPN7 881 aa25.08■■□□□ 1.61
SHKBP1-219ENST00000599575 ERBINQ96RT1 1412 aa25.07■■□□□ 1.6
SHKBP1-219ENST00000599575 RRP7BPQ9NSQ0 103 aa25.07■■□□□ 1.6
SHKBP1-219ENST00000599575 ITGAEP38570 1179 aa25.05■■□□□ 1.6
SHKBP1-219ENST00000599575 EIF2AK4Q9P2K8 1649 aaKnown RBP25.02■■□□□ 1.6
SHKBP1-219ENST00000599575 BCORL1Q5H9F3 1711 aa25.02■■□□□ 1.6
SHKBP1-219ENST00000599575 SIGLEC1Q9BZZ2 1709 aa25■■□□□ 1.59
SHKBP1-219ENST00000599575 KIF3BO15066 747 aa25■■□□□ 1.59
SHKBP1-219ENST00000599575 FAM135AQ9P2D6 1515 aa24.99■■□□□ 1.59
SHKBP1-219ENST00000599575 ANKRD50Q9ULJ7 1429 aa24.99■■□□□ 1.59
SHKBP1-219ENST00000599575 ADAMTSL3P82987 1691 aa24.97■■□□□ 1.59
SHKBP1-219ENST00000599575 KDM4FA0A1W2PPD8 638 aa24.97■■□□□ 1.59
SHKBP1-219ENST00000599575 CNTLNQ9NXG0 1405 aa24.96■■□□□ 1.59
SHKBP1-219ENST00000599575 MLECQ14165 292 aa24.96■■□□□ 1.59
SHKBP1-219ENST00000599575 ESF1Q9H501 851 aaKnown RBP24.96■■□□□ 1.59
SHKBP1-219ENST00000599575 HFM1A2PYH4 1435 aa24.95■■□□□ 1.58
SHKBP1-219ENST00000599575 GGT6Q6P531 493 aa24.94■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms