RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 SCAPERQ9BY12 1400 aa22.34■■□□□ 1.17
SHKBP1-217ENST00000598558 MYO5CQ9NQX4 1742 aa22.34■■□□□ 1.17
SHKBP1-217ENST00000598558 NCOA2Q15596 1464 aa22.34■■□□□ 1.17
SHKBP1-217ENST00000598558 APLP2Q06481 763 aa22.33■■□□□ 1.17
SHKBP1-217ENST00000598558 CDC42BPBQ9Y5S2 1711 aa22.32■■□□□ 1.16
SHKBP1-217ENST00000598558 DENND4BO75064 1496 aaPredicted RBP22.32■■□□□ 1.16
SHKBP1-217ENST00000598558 FRMPD1Q5SYB0 1578 aa22.31■■□□□ 1.16
SHKBP1-217ENST00000598558 ADGRL1O94910 1474 aa22.31■■□□□ 1.16
SHKBP1-217ENST00000598558 CFDP1Q9UEE9 299 aaPredicted RBP22.31■■□□□ 1.16
SHKBP1-217ENST00000598558 ZNF777Q9ULD5 760 aaPredicted RBP22.31■■□□□ 1.16
SHKBP1-217ENST00000598558 PREX2Q70Z35 1606 aa22.31■■□□□ 1.16
SHKBP1-217ENST00000598558 ZNF644Q9H582 1327 aaPredicted RBP22.31■■□□□ 1.16
SHKBP1-217ENST00000598558 CDC42BPAQ5VT25 1732 aa22.3■■□□□ 1.16
SHKBP1-217ENST00000598558 ARHGEF12Q9NZN5 1544 aa22.3■■□□□ 1.16
SHKBP1-217ENST00000598558 AFAP1Q8N556 730 aa22.28■■□□□ 1.16
SHKBP1-217ENST00000598558 CFAP74Q9C0B2 1584 aa22.28■■□□□ 1.16
SHKBP1-217ENST00000598558 TRAPPC8Q9Y2L5 1435 aa22.25■■□□□ 1.15
SHKBP1-217ENST00000598558 HNRNPMP52272 730 aaKnown RBP eCLIP22.25■■□□□ 1.15
SHKBP1-217ENST00000598558 POGZQ7Z3K3 1410 aa22.24■■□□□ 1.15
SHKBP1-217ENST00000598558 SUPT6HQ7KZ85 1726 aaKnown RBP22.24■■□□□ 1.15
SHKBP1-217ENST00000598558 SAMD9LQ8IVG5 1584 aa22.23■■□□□ 1.15
SHKBP1-217ENST00000598558 PPARGC1BQ86YN6 1023 aaKnown RBP22.22■■□□□ 1.15
SHKBP1-217ENST00000598558 ABCC1P33527 1531 aa22.21■■□□□ 1.15
SHKBP1-217ENST00000598558 RICTORQ6R327 1708 aa22.21■■□□□ 1.15
SHKBP1-217ENST00000598558 YEATS2Q9ULM3 1422 aa22.19■■□□□ 1.14
SHKBP1-217ENST00000598558 KIAA1107Q9UPP5 1409 aa22.17■■□□□ 1.14
SHKBP1-217ENST00000598558 ZMYM4Q5VZL5 1548 aa22.16■■□□□ 1.14
SHKBP1-217ENST00000598558 SYCP2Q9BX26 1530 aa22.16■■□□□ 1.14
SHKBP1-217ENST00000598558 MBD5Q9P267 1494 aa22.15■■□□□ 1.14
SHKBP1-217ENST00000598558 MYOM3Q5VTT5 1437 aa22.15■■□□□ 1.14
SHKBP1-217ENST00000598558 ZNF518AQ6AHZ1 1483 aa22.15■■□□□ 1.14
SHKBP1-217ENST00000598558 KDM4FA0A1W2PPD8 638 aa22.13■■□□□ 1.13
SHKBP1-217ENST00000598558 KDM5CP41229 1560 aa22.12■■□□□ 1.13
SHKBP1-217ENST00000598558 ITSN2Q9NZM3 1697 aa22.12■■□□□ 1.13
SHKBP1-217ENST00000598558 CAMSAP2Q08AD1 1489 aa22.11■■□□□ 1.13
SHKBP1-217ENST00000598558 PLEKHH2Q8IVE3 1493 aa22.11■■□□□ 1.13
SHKBP1-217ENST00000598558 MAGI2Q86UL8 1455 aa22.1■■□□□ 1.13
SHKBP1-217ENST00000598558 MIA2Q96PC5 1412 aa22.09■■□□□ 1.13
SHKBP1-217ENST00000598558 ZFYVE16Q7Z3T8 1539 aa22.09■■□□□ 1.13
SHKBP1-217ENST00000598558 MLH3Q9UHC1 1453 aa22.09■■□□□ 1.13
SHKBP1-217ENST00000598558 ARHGEF40Q8TER5 1519 aa22.07■■□□□ 1.12
SHKBP1-217ENST00000598558 MYT1LQ9UL68 1186 aa22.07■■□□□ 1.12
SHKBP1-217ENST00000598558 SPAG9O60271 1321 aaKnown RBP22.06■■□□□ 1.12
SHKBP1-217ENST00000598558 FGD6Q6ZV73 1430 aa22.06■■□□□ 1.12
SHKBP1-217ENST00000598558 ATP10AO60312 1499 aa22.04■■□□□ 1.12
SHKBP1-217ENST00000598558 HECW2Q9P2P5 1572 aa22.02■■□□□ 1.12
SHKBP1-217ENST00000598558 SIGLEC1Q9BZZ2 1709 aa22.02■■□□□ 1.12
SHKBP1-217ENST00000598558 ARID4BQ4LE39 1312 aaPredicted RBP22.01■■□□□ 1.11
SHKBP1-217ENST00000598558 DIP2CQ9Y2E4 1556 aa22■■□□□ 1.11
SHKBP1-217ENST00000598558 KIDINS220Q9ULH0 1771 aa22■■□□□ 1.11
SHKBP1-217ENST00000598558 RSPH4AQ5TD94 716 aa22■■□□□ 1.11
SHKBP1-217ENST00000598558 TCOF1Q13428 1488 aaKnown RBP21.99■■□□□ 1.11
SHKBP1-217ENST00000598558 CCDC141Q6ZP82 1450 aa21.99■■□□□ 1.11
SHKBP1-217ENST00000598558 ABCA6Q8N139 1617 aa21.98■■□□□ 1.11
SHKBP1-217ENST00000598558 PTPN23Q9H3S7 1636 aa21.98■■□□□ 1.11
SHKBP1-217ENST00000598558 C9orf84Q5VXU9 1444 aa21.97■■□□□ 1.11
SHKBP1-217ENST00000598558 ARHGEF5Q12774 1597 aa21.97■■□□□ 1.11
SHKBP1-217ENST00000598558 ATP7AQ04656 1500 aa21.96■■□□□ 1.11
SHKBP1-217ENST00000598558 ABCC5O15440 1437 aa21.96■■□□□ 1.11
SHKBP1-217ENST00000598558 INO80Q9ULG1 1556 aaPredicted RBP21.95■■□□□ 1.11
SHKBP1-217ENST00000598558 MLECQ14165 292 aa21.95■■□□□ 1.1
SHKBP1-217ENST00000598558 RTEL1-TNFRSF6BF6WH68 1400 aa21.95■■□□□ 1.1
SHKBP1-217ENST00000598558 TSPY4P0CV99 314 aa21.94■■□□□ 1.1
SHKBP1-217ENST00000598558 TSPY10P0CW01 314 aa21.94■■□□□ 1.1
SHKBP1-217ENST00000598558 FAM50AQ14320 339 aaKnown RBP21.94■■□□□ 1.1
SHKBP1-217ENST00000598558 DAPK1P53355 1430 aa21.89■■□□□ 1.1
SHKBP1-217ENST00000598558 REREQ9P2R6 1566 aa21.89■■□□□ 1.09
SHKBP1-217ENST00000598558 A2MP01023 1474 aa21.89■■□□□ 1.09
SHKBP1-217ENST00000598558 BCORL1Q5H9F3 1711 aa21.87■■□□□ 1.09
SHKBP1-217ENST00000598558 CHIC2Q9UKJ5 165 aa21.87■■□□□ 1.09
SHKBP1-217ENST00000598558 DHX29Q7Z478 1369 aaKnown RBP21.87■■□□□ 1.09
SHKBP1-217ENST00000598558 ADAMTSL3P82987 1691 aa21.86■■□□□ 1.09
SHKBP1-217ENST00000598558 PTPRKQ15262 1439 aa21.86■■□□□ 1.09
SHKBP1-217ENST00000598558 AGLP35573 1532 aa21.85■■□□□ 1.09
SHKBP1-217ENST00000598558 MAST1Q9Y2H9 1570 aa21.85■■□□□ 1.09
SHKBP1-217ENST00000598558 AEBP2Q6ZN18 517 aaPredicted RBP21.84■■□□□ 1.09
SHKBP1-217ENST00000598558 DNMT1P26358 1616 aaKnown RBP21.84■■□□□ 1.09
SHKBP1-217ENST00000598558 PLXNC1O60486 1568 aa21.82■■□□□ 1.08
SHKBP1-217ENST00000598558 RRP7BPQ9NSQ0 103 aa21.82■■□□□ 1.08
SHKBP1-217ENST00000598558 SHANK2Q9UPX8 1470 aa21.81■■□□□ 1.08
SHKBP1-217ENST00000598558 RRBP1Q9P2E9 1410 aaKnown RBP21.8■■□□□ 1.08
SHKBP1-217ENST00000598558 MADDQ8WXG6 1647 aa21.8■■□□□ 1.08
SHKBP1-217ENST00000598558 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.78■■□□□ 1.08
SHKBP1-217ENST00000598558 KIF3BO15066 747 aa21.78■■□□□ 1.08
SHKBP1-217ENST00000598558 ITGAEP38570 1179 aa21.78■■□□□ 1.08
SHKBP1-217ENST00000598558 GGT6Q6P531 493 aa21.78■■□□□ 1.08
SHKBP1-217ENST00000598558 ADGBQ8N7X0 1667 aa21.78■■□□□ 1.08
SHKBP1-217ENST00000598558 PTPRMP28827 1452 aa21.77■■□□□ 1.08
SHKBP1-217ENST00000598558 NCOA1Q15788 1441 aa21.77■■□□□ 1.08
SHKBP1-217ENST00000598558 KIF15Q9NS87 1388 aa21.76■■□□□ 1.07
SHKBP1-217ENST00000598558 CROCC2H7BZ55 1655 aa21.75■■□□□ 1.07
SHKBP1-217ENST00000598558 CEBPAP49715 358 aaPredicted RBP21.74■■□□□ 1.07
SHKBP1-217ENST00000598558 PLPPR3Q6T4P5 718 aa21.73■■□□□ 1.07
SHKBP1-217ENST00000598558 ANKRD30AQ9BXX3 1397 aa21.73■■□□□ 1.07
SHKBP1-217ENST00000598558 ADGRL2O95490 1459 aa21.72■■□□□ 1.07
SHKBP1-217ENST00000598558 RIMS1Q86UR5 1692 aaKnown RBP21.7■■□□□ 1.06
SHKBP1-217ENST00000598558 DUOX2Q9NRD8 1548 aa21.7■■□□□ 1.06
SHKBP1-217ENST00000598558 ROCK1Q13464 1354 aa21.65■■□□□ 1.06
SHKBP1-217ENST00000598558 PPP6R1Q9UPN7 881 aa21.65■■□□□ 1.06
SHKBP1-217ENST00000598558 FER1L4A9Z1Z3 1794 aa21.65■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms