RNA–Protein interactions for RNA: ENST00000596332.1

LIG1-210, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-210ENST00000596332 AKNAQ7Z591 1439 aa16.56■□□□□ 0.24
LIG1-210ENST00000596332 PPARGC1BQ86YN6 1023 aaKnown RBP16.56■□□□□ 0.24
LIG1-210ENST00000596332 SUPT6HQ7KZ85 1726 aaKnown RBP16.56■□□□□ 0.24
LIG1-210ENST00000596332 ARHGEF12Q9NZN5 1544 aa16.55■□□□□ 0.24
LIG1-210ENST00000596332 CCNB3Q8WWL7 1395 aa16.55■□□□□ 0.24
LIG1-210ENST00000596332 ZNF644Q9H582 1327 aaPredicted RBP16.55■□□□□ 0.24
LIG1-210ENST00000596332 EFCAB2Q5VUJ9 269 aa16.55■□□□□ 0.24
LIG1-210ENST00000596332 MYO5CQ9NQX4 1742 aa16.55■□□□□ 0.24
LIG1-210ENST00000596332 ARHGAP5Q13017 1502 aa16.51■□□□□ 0.23
LIG1-210ENST00000596332 CFDP1Q9UEE9 299 aaPredicted RBP16.51■□□□□ 0.23
LIG1-210ENST00000596332 SAMD9LQ8IVG5 1584 aa16.51■□□□□ 0.23
LIG1-210ENST00000596332 RAPGEF3O95398 923 aa16.5■□□□□ 0.23
LIG1-210ENST00000596332 MYOM3Q5VTT5 1437 aa16.5■□□□□ 0.23
LIG1-210ENST00000596332 FRMPD1Q5SYB0 1578 aa16.49■□□□□ 0.23
LIG1-210ENST00000596332 SCAPERQ9BY12 1400 aa16.49■□□□□ 0.23
LIG1-210ENST00000596332 MBD5Q9P267 1494 aa16.48■□□□□ 0.23
LIG1-210ENST00000596332 KDM6BO15054 1643 aa16.48■□□□□ 0.23
LIG1-210ENST00000596332 ADGRL1O94910 1474 aa16.48■□□□□ 0.23
LIG1-210ENST00000596332 TRAPPC8Q9Y2L5 1435 aa16.47■□□□□ 0.23
LIG1-210ENST00000596332 ABCC1P33527 1531 aa16.47■□□□□ 0.23
LIG1-210ENST00000596332 MIA2Q96PC5 1412 aa16.46■□□□□ 0.23
LIG1-210ENST00000596332 KIAA1107Q9UPP5 1409 aa16.46■□□□□ 0.23
LIG1-210ENST00000596332 HNRNPMP52272 730 aaKnown RBP eCLIP16.46■□□□□ 0.23
LIG1-210ENST00000596332 AFAP1Q8N556 730 aa16.46■□□□□ 0.23
LIG1-210ENST00000596332 ZNF777Q9ULD5 760 aaPredicted RBP16.46■□□□□ 0.23
LIG1-210ENST00000596332 DENND4BO75064 1496 aaPredicted RBP16.45■□□□□ 0.22
LIG1-210ENST00000596332 CFAP74Q9C0B2 1584 aa16.45■□□□□ 0.22
LIG1-210ENST00000596332 RICTORQ6R327 1708 aa16.44■□□□□ 0.22
LIG1-210ENST00000596332 FGD6Q6ZV73 1430 aa16.44■□□□□ 0.22
LIG1-210ENST00000596332 POGZQ7Z3K3 1410 aa16.44■□□□□ 0.22
LIG1-210ENST00000596332 ITSN2Q9NZM3 1697 aa16.43■□□□□ 0.22
LIG1-210ENST00000596332 CAMSAP2Q08AD1 1489 aa16.42■□□□□ 0.22
LIG1-210ENST00000596332 TCOF1Q13428 1488 aaKnown RBP16.42■□□□□ 0.22
LIG1-210ENST00000596332 SYCP2Q9BX26 1530 aa16.41■□□□□ 0.22
LIG1-210ENST00000596332 KDM5CP41229 1560 aa16.4■□□□□ 0.22
LIG1-210ENST00000596332 PLEKHH2Q8IVE3 1493 aa16.39■□□□□ 0.21
LIG1-210ENST00000596332 ZMYM4Q5VZL5 1548 aa16.39■□□□□ 0.21
LIG1-210ENST00000596332 PTPN23Q9H3S7 1636 aa16.37■□□□□ 0.21
LIG1-210ENST00000596332 YEATS2Q9ULM3 1422 aa16.36■□□□□ 0.21
LIG1-210ENST00000596332 ZNF518AQ6AHZ1 1483 aa16.36■□□□□ 0.21
LIG1-210ENST00000596332 ABCC5O15440 1437 aa16.36■□□□□ 0.21
LIG1-210ENST00000596332 RRBP1Q9P2E9 1410 aaKnown RBP16.36■□□□□ 0.21
LIG1-210ENST00000596332 MLH3Q9UHC1 1453 aa16.35■□□□□ 0.21
LIG1-210ENST00000596332 ARHGEF5Q12774 1597 aa16.35■□□□□ 0.21
LIG1-210ENST00000596332 PTPRKQ15262 1439 aa16.33■□□□□ 0.2
LIG1-210ENST00000596332 MAGI2Q86UL8 1455 aa16.33■□□□□ 0.2
LIG1-210ENST00000596332 RSPH4AQ5TD94 716 aa16.32■□□□□ 0.2
LIG1-210ENST00000596332 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.32■□□□□ 0.2
LIG1-210ENST00000596332 KIDINS220Q9ULH0 1771 aa16.32■□□□□ 0.2
LIG1-210ENST00000596332 CCDC141Q6ZP82 1450 aa16.31■□□□□ 0.2
LIG1-210ENST00000596332 SIGLEC1Q9BZZ2 1709 aa16.3■□□□□ 0.2
LIG1-210ENST00000596332 INO80Q9ULG1 1556 aaPredicted RBP16.3■□□□□ 0.2
LIG1-210ENST00000596332 RTEL1-TNFRSF6BF6WH68 1400 aa16.29■□□□□ 0.2
LIG1-210ENST00000596332 DAPK1P53355 1430 aa16.29■□□□□ 0.2
LIG1-210ENST00000596332 SPAG9O60271 1321 aaKnown RBP16.29■□□□□ 0.2
LIG1-210ENST00000596332 DNMT1P26358 1616 aaKnown RBP16.28■□□□□ 0.2
LIG1-210ENST00000596332 HECW2Q9P2P5 1572 aa16.28■□□□□ 0.2
LIG1-210ENST00000596332 ZFYVE16Q7Z3T8 1539 aa16.28■□□□□ 0.2
LIG1-210ENST00000596332 ABCA6Q8N139 1617 aa16.27■□□□□ 0.2
LIG1-210ENST00000596332 DIP2CQ9Y2E4 1556 aa16.27■□□□□ 0.2
LIG1-210ENST00000596332 FAM50AQ14320 339 aaKnown RBP16.27■□□□□ 0.2
LIG1-210ENST00000596332 ARHGEF40Q8TER5 1519 aa16.27■□□□□ 0.2
LIG1-210ENST00000596332 MAST1Q9Y2H9 1570 aa16.26■□□□□ 0.19
LIG1-210ENST00000596332 ATP7AQ04656 1500 aa16.26■□□□□ 0.19
LIG1-210ENST00000596332 ATP10AO60312 1499 aa16.26■□□□□ 0.19
LIG1-210ENST00000596332 C9orf84Q5VXU9 1444 aa16.24■□□□□ 0.19
LIG1-210ENST00000596332 SHANK2Q9UPX8 1470 aa16.23■□□□□ 0.19
LIG1-210ENST00000596332 TSPY4P0CV99 314 aa16.23■□□□□ 0.19
LIG1-210ENST00000596332 TSPY10P0CW01 314 aa16.23■□□□□ 0.19
LIG1-210ENST00000596332 CROCC2H7BZ55 1655 aa16.22■□□□□ 0.19
LIG1-210ENST00000596332 REREQ9P2R6 1566 aa16.21■□□□□ 0.19
LIG1-210ENST00000596332 NCOA1Q15788 1441 aa16.21■□□□□ 0.19
LIG1-210ENST00000596332 PHF23Q9BUL5 403 aaPredicted RBP16.21■□□□□ 0.19
LIG1-210ENST00000596332 CHIC2Q9UKJ5 165 aa16.21■□□□□ 0.19
LIG1-210ENST00000596332 ADGRL2O95490 1459 aa16.21■□□□□ 0.19
LIG1-210ENST00000596332 DHX29Q7Z478 1369 aaKnown RBP16.2■□□□□ 0.18
LIG1-210ENST00000596332 PLXNC1O60486 1568 aa16.2■□□□□ 0.18
LIG1-210ENST00000596332 A2MP01023 1474 aa16.18■□□□□ 0.18
LIG1-210ENST00000596332 AGLP35573 1532 aa16.18■□□□□ 0.18
LIG1-210ENST00000596332 ADGBQ8N7X0 1667 aa16.18■□□□□ 0.18
LIG1-210ENST00000596332 KDM4FA0A1W2PPD8 638 aa16.17■□□□□ 0.18
LIG1-210ENST00000596332 RRP7BPQ9NSQ0 103 aa16.17■□□□□ 0.18
LIG1-210ENST00000596332 MYT1LQ9UL68 1186 aa16.16■□□□□ 0.18
LIG1-210ENST00000596332 ROCK1Q13464 1354 aa16.15■□□□□ 0.18
LIG1-210ENST00000596332 ITGAEP38570 1179 aa16.15■□□□□ 0.18
LIG1-210ENST00000596332 KIF15Q9NS87 1388 aa16.13■□□□□ 0.17
LIG1-210ENST00000596332 ANKRD30AQ9BXX3 1397 aa16.13■□□□□ 0.17
LIG1-210ENST00000596332 DUOX2Q9NRD8 1548 aa16.11■□□□□ 0.17
LIG1-210ENST00000596332 ADAMTSL3P82987 1691 aa16.1■□□□□ 0.17
LIG1-210ENST00000596332 BCORL1Q5H9F3 1711 aa16.1■□□□□ 0.17
LIG1-210ENST00000596332 NAIPQ13075 1403 aa16.09■□□□□ 0.17
LIG1-210ENST00000596332 KIF3BO15066 747 aa16.08■□□□□ 0.16
LIG1-210ENST00000596332 ARID4BQ4LE39 1312 aaPredicted RBP16.08■□□□□ 0.16
LIG1-210ENST00000596332 MLECQ14165 292 aa16.07■□□□□ 0.16
LIG1-210ENST00000596332 ERBINQ96RT1 1412 aa16.07■□□□□ 0.16
LIG1-210ENST00000596332 MROH1Q8NDA8 1641 aa16.07■□□□□ 0.16
LIG1-210ENST00000596332 ANKRD50Q9ULJ7 1429 aa16.06■□□□□ 0.16
LIG1-210ENST00000596332 HFM1A2PYH4 1435 aa16.04■□□□□ 0.16
LIG1-210ENST00000596332 GGT6Q6P531 493 aa16.04■□□□□ 0.16
LIG1-210ENST00000596332 EIF2AK4Q9P2K8 1649 aaKnown RBP16.04■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 7.2 ms