RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 WDR62O43379 1518 aa13.39□□□□□ -0.27
LIG3-216ENST00000593099 FOXD1Q16676 465 aa13.39□□□□□ -0.27
LIG3-216ENST00000593099 ZNF644Q9H582 1327 aaPredicted RBP13.38□□□□□ -0.27
LIG3-216ENST00000593099 TROQ12816 1431 aaPredicted RBP13.38□□□□□ -0.27
LIG3-216ENST00000593099 KIF21AQ7Z4S6 1674 aa13.37□□□□□ -0.27
LIG3-216ENST00000593099 LRRC9Q6ZRR7 1453 aa13.37□□□□□ -0.27
LIG3-216ENST00000593099 TIMELESSQ9UNS1 1208 aa13.37□□□□□ -0.27
LIG3-216ENST00000593099 AFAP1Q8N556 730 aa13.36□□□□□ -0.27
LIG3-216ENST00000593099 HAP1P54257 671 aaPredicted RBP13.36□□□□□ -0.27
LIG3-216ENST00000593099 ARHGAP5Q13017 1502 aa13.36□□□□□ -0.27
LIG3-216ENST00000593099 HIRIP3Q9BW71 556 aaPredicted RBP13.36□□□□□ -0.27
LIG3-216ENST00000593099 NCOA2Q15596 1464 aa13.35□□□□□ -0.27
LIG3-216ENST00000593099 FGD6Q6ZV73 1430 aa13.35□□□□□ -0.27
LIG3-216ENST00000593099 PLEKHG5O94827 1062 aa13.35□□□□□ -0.27
LIG3-216ENST00000593099 HECW1Q76N89 1606 aa13.32□□□□□ -0.28
LIG3-216ENST00000593099 KIF15Q9NS87 1388 aa13.32□□□□□ -0.28
LIG3-216ENST00000593099 ZBTB7CA1YPR0 619 aa13.32□□□□□ -0.28
LIG3-216ENST00000593099 PHLDB1Q86UU1 1377 aa13.31□□□□□ -0.28
LIG3-216ENST00000593099 GLIPR1L2Q4G1C9 344 aa13.31□□□□□ -0.28
LIG3-216ENST00000593099 PLB1Q6P1J6 1458 aa13.31□□□□□ -0.28
LIG3-216ENST00000593099 STK26Q9P289 416 aa13.3□□□□□ -0.28
LIG3-216ENST00000593099 PLEKHH2Q8IVE3 1493 aa13.3□□□□□ -0.28
LIG3-216ENST00000593099 LMOD2Q6P5Q4 547 aa13.3□□□□□ -0.28
LIG3-216ENST00000593099 AEBP2Q6ZN18 517 aaPredicted RBP13.3□□□□□ -0.28
LIG3-216ENST00000593099 EPRSP07814 1512 aaKnown RBP13.28□□□□□ -0.28
LIG3-216ENST00000593099 KNSTRNQ9Y448 316 aa13.28□□□□□ -0.28
LIG3-216ENST00000593099 EHBP1L1Q8N3D4 1523 aa13.28□□□□□ -0.28
LIG3-216ENST00000593099 RAPGEF3O95398 923 aa13.27□□□□□ -0.28
LIG3-216ENST00000593099 CD109Q6YHK3 1445 aa13.27□□□□□ -0.28
LIG3-216ENST00000593099 SAFB2Q14151 953 aaKnown RBP eCLIP13.27□□□□□ -0.29
LIG3-216ENST00000593099 TMF1P82094 1093 aa13.27□□□□□ -0.29
LIG3-216ENST00000593099 WDR43Q15061 677 aaKnown RBP eCLIP13.26□□□□□ -0.29
LIG3-216ENST00000593099 SRPK2P78362 688 aaKnown RBP13.26□□□□□ -0.29
LIG3-216ENST00000593099 SCAPERQ9BY12 1400 aa13.26□□□□□ -0.29
LIG3-216ENST00000593099 EIF4G3O43432 1585 aaKnown RBP13.26□□□□□ -0.29
LIG3-216ENST00000593099 CDK13Q14004 1512 aaKnown RBP13.24□□□□□ -0.29
LIG3-216ENST00000593099 CCDC144AA2RUR9 1427 aa13.24□□□□□ -0.29
LIG3-216ENST00000593099 MIA2Q96PC5 1412 aa13.24□□□□□ -0.29
LIG3-216ENST00000593099 NUTM2DQ5VT03 806 aaPredicted RBP13.24□□□□□ -0.29
LIG3-216ENST00000593099 ANKRD50Q9ULJ7 1429 aa13.24□□□□□ -0.29
LIG3-216ENST00000593099 CANXP27824 592 aaKnown RBP13.24□□□□□ -0.29
LIG3-216ENST00000593099 VGFO15240 615 aaPredicted RBP13.23□□□□□ -0.29
LIG3-216ENST00000593099 ADAMTS12P58397 1594 aa13.22□□□□□ -0.29
LIG3-216ENST00000593099 FAM9BQ8IZU0 186 aa13.22□□□□□ -0.29
LIG3-216ENST00000593099 CFAP53Q96M91 514 aa13.22□□□□□ -0.29
LIG3-216ENST00000593099 MRS2Q9HD23 443 aa13.21□□□□□ -0.3
LIG3-216ENST00000593099 L3MBTL2Q969R5 705 aa13.2□□□□□ -0.3
LIG3-216ENST00000593099 A0A0G2JS52 829 aa13.2□□□□□ -0.3
LIG3-216ENST00000593099 ROCK2O75116 1388 aaKnown RBP13.19□□□□□ -0.3
LIG3-216ENST00000593099 POGZQ7Z3K3 1410 aa13.19□□□□□ -0.3
LIG3-216ENST00000593099 PPM1GO15355 546 aaPredicted RBP13.19□□□□□ -0.3
LIG3-216ENST00000593099 TIAM1Q13009 1591 aa13.18□□□□□ -0.3
LIG3-216ENST00000593099 NUP160Q12769 1436 aa13.18□□□□□ -0.3
LIG3-216ENST00000593099 C9orf84Q5VXU9 1444 aa13.18□□□□□ -0.3
LIG3-216ENST00000593099 ZBTB47Q9UFB7 747 aaPredicted RBP13.18□□□□□ -0.3
LIG3-216ENST00000593099 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.17□□□□□ -0.3
LIG3-216ENST00000593099 ARHGEF11O15085 1522 aa13.17□□□□□ -0.3
LIG3-216ENST00000593099 EIF5BO60841 1220 aaKnown RBP13.17□□□□□ -0.3
LIG3-216ENST00000593099 EIF3AQ14152 1382 aaKnown RBP13.16□□□□□ -0.3
LIG3-216ENST00000593099 HDGFL2Q7Z4V5 671 aaPredicted RBP13.15□□□□□ -0.3
LIG3-216ENST00000593099 SALL2Q9Y467 1007 aaPredicted RBP13.15□□□□□ -0.31
LIG3-216ENST00000593099 WDR97A6NE52 1622 aa13.14□□□□□ -0.31
LIG3-216ENST00000593099 HNRNPUQ00839 825 aaKnown RBP eCLIP13.14□□□□□ -0.31
LIG3-216ENST00000593099 PCF11O94913 1555 aaKnown RBP13.14□□□□□ -0.31
LIG3-216ENST00000593099 ASXL2Q76L83 1435 aa13.13□□□□□ -0.31
LIG3-216ENST00000593099 UGGT2Q9NYU1 1516 aa13.13□□□□□ -0.31
LIG3-216ENST00000593099 ADGRL1O94910 1474 aa13.13□□□□□ -0.31
LIG3-216ENST00000593099 HSPA5P11021 654 aaKnown RBP13.13□□□□□ -0.31
LIG3-216ENST00000593099 NUDCQ9Y266 331 aa13.12□□□□□ -0.31
LIG3-216ENST00000593099 SUPT6HQ7KZ85 1726 aaKnown RBP13.12□□□□□ -0.31
LIG3-216ENST00000593099 TRAK1Q9UPV9 953 aa13.12□□□□□ -0.31
LIG3-216ENST00000593099 KIF14Q15058 1648 aa13.11□□□□□ -0.31
LIG3-216ENST00000593099 RRBP1Q9P2E9 1410 aaKnown RBP13.11□□□□□ -0.31
LIG3-216ENST00000593099 NPM2Q86SE8 214 aaKnown RBP13.11□□□□□ -0.31
LIG3-216ENST00000593099 STAC3Q96MF2 364 aa13.11□□□□□ -0.31
LIG3-216ENST00000593099 ATP10BO94823 1461 aa13.1□□□□□ -0.31
LIG3-216ENST00000593099 RTL5Q5HYW3 569 aaPredicted RBP13.1□□□□□ -0.31
LIG3-216ENST00000593099 PAK3O75914 559 aaPredicted RBP13.1□□□□□ -0.31
LIG3-216ENST00000593099 DENND4BO75064 1496 aaPredicted RBP13.1□□□□□ -0.31
LIG3-216ENST00000593099 TNNT2P45379 298 aaPredicted RBP13.1□□□□□ -0.31
LIG3-216ENST00000593099 DHX57Q6P158 1386 aaKnown RBP13.09□□□□□ -0.31
LIG3-216ENST00000593099 ABCA5Q8WWZ7 1642 aa13.09□□□□□ -0.31
LIG3-216ENST00000593099 CCDC141Q6ZP82 1450 aa13.09□□□□□ -0.31
LIG3-216ENST00000593099 SOX12O15370 315 aa13.09□□□□□ -0.31
LIG3-216ENST00000593099 THEMISQ8N1K5 641 aaPredicted RBP13.09□□□□□ -0.31
LIG3-216ENST00000593099 DAPK1P53355 1430 aa13.08□□□□□ -0.32
LIG3-216ENST00000593099 NGDNQ8NEJ9 315 aaKnown RBP13.08□□□□□ -0.32
LIG3-216ENST00000593099 FANCAO15360 1455 aa13.08□□□□□ -0.32
LIG3-216ENST00000593099 CC2D1BQ5T0F9 858 aaKnown RBP13.07□□□□□ -0.32
LIG3-216ENST00000593099 SLC52A1Q9NWF4 448 aa13.07□□□□□ -0.32
LIG3-216ENST00000593099 TARBP1Q13395 1621 aaKnown RBP13.07□□□□□ -0.32
LIG3-216ENST00000593099 TERF2IPQ9NYB0 399 aa13.07□□□□□ -0.32
LIG3-216ENST00000593099 MAP3K1Q13233 1512 aa13.07□□□□□ -0.32
LIG3-216ENST00000593099 TEX14Q8IWB6 1497 aa13.07□□□□□ -0.32
LIG3-216ENST00000593099 MORC1Q86VD1 984 aa13.07□□□□□ -0.32
LIG3-216ENST00000593099 TXNDC2Q86VQ3 553 aa13.06□□□□□ -0.32
LIG3-216ENST00000593099 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.06□□□□□ -0.32
LIG3-216ENST00000593099 WDR7Q9Y4E6 1490 aa13.06□□□□□ -0.32
LIG3-216ENST00000593099 KIAA0556O60303 1618 aa13.06□□□□□ -0.32
LIG3-216ENST00000593099 RAPGEF6Q8TEU7 1601 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms