RNA–Protein interactions for RNA: ENST00000590499.1

SMAD4-211, Transcript of SMAD family member 4, humanhuman

TSL 4

Gene SMAD4, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-211ENST00000590499 POTEIP0CG38 1075 aa18.65■□□□□ 0.58
SMAD4-211ENST00000590499 DIP2BQ9P265 1576 aa18.64■□□□□ 0.58
SMAD4-211ENST00000590499 CD44P16070 742 aaKnown RBP18.64■□□□□ 0.57
SMAD4-211ENST00000590499 KDM5BQ9UGL1 1544 aa18.64■□□□□ 0.57
SMAD4-211ENST00000590499 ABCA8O94911 1581 aa18.63■□□□□ 0.57
SMAD4-211ENST00000590499 FARP1Q9Y4F1 1045 aaPredicted RBP18.62■□□□□ 0.57
SMAD4-211ENST00000590499 PLB1Q6P1J6 1458 aa18.61■□□□□ 0.57
SMAD4-211ENST00000590499 ZCCHC11Q5TAX3 1644 aaKnown RBP18.6■□□□□ 0.57
SMAD4-211ENST00000590499 ASXL2Q76L83 1435 aa18.57■□□□□ 0.56
SMAD4-211ENST00000590499 FAM69CQ0P6D2 419 aa18.54■□□□□ 0.56
SMAD4-211ENST00000590499 EFCAB5A4FU69 1503 aa18.54■□□□□ 0.56
SMAD4-211ENST00000590499 P3H3Q8IVL6 736 aa18.53■□□□□ 0.56
SMAD4-211ENST00000590499 GLI2P10070 1586 aa18.51■□□□□ 0.55
SMAD4-211ENST00000590499 FHOD3Q2V2M9 1422 aa18.49■□□□□ 0.55
SMAD4-211ENST00000590499 RAPGEF6Q8TEU7 1601 aa18.49■□□□□ 0.55
SMAD4-211ENST00000590499 EPRSP07814 1512 aaKnown RBP18.48■□□□□ 0.55
SMAD4-211ENST00000590499 CLCN6P51797 869 aa18.47■□□□□ 0.55
SMAD4-211ENST00000590499 WDR7Q9Y4E6 1490 aa18.46■□□□□ 0.55
SMAD4-211ENST00000590499 TSPOAP1O95153 1857 aa18.46■□□□□ 0.55
SMAD4-211ENST00000590499 UBTFP17480 764 aaKnown RBP18.46■□□□□ 0.55
SMAD4-211ENST00000590499 PPRC1Q5VV67 1664 aaKnown RBP18.45■□□□□ 0.54
SMAD4-211ENST00000590499 RANGAP1P46060 587 aaPredicted RBP18.45■□□□□ 0.54
SMAD4-211ENST00000590499 ATP10BO94823 1461 aa18.44■□□□□ 0.54
SMAD4-211ENST00000590499 MAP3K4Q9Y6R4 1608 aa18.43■□□□□ 0.54
SMAD4-211ENST00000590499 NUP153P49790 1475 aaKnown RBP18.42■□□□□ 0.54
SMAD4-211ENST00000590499 ARHGAP35Q9NRY4 1499 aa18.42■□□□□ 0.54
SMAD4-211ENST00000590499 ARID3CA6NKF2 412 aa18.35■□□□□ 0.53
SMAD4-211ENST00000590499 CFAP43Q8NDM7 1665 aa18.34■□□□□ 0.53
SMAD4-211ENST00000590499 KDM6BO15054 1643 aa18.34■□□□□ 0.53
SMAD4-211ENST00000590499 DCBLD2Q96PD2 775 aa18.34■□□□□ 0.53
SMAD4-211ENST00000590499 ZNF579Q8NAF0 562 aaKnown RBP18.33■□□□□ 0.52
SMAD4-211ENST00000590499 FMN1Q68DA7 1419 aa18.32■□□□□ 0.52
SMAD4-211ENST00000590499 TEX14Q8IWB6 1497 aa18.3■□□□□ 0.52
SMAD4-211ENST00000590499 ABCA9Q8IUA7 1624 aa18.3■□□□□ 0.52
SMAD4-211ENST00000590499 MAGI3Q5TCQ9 1506 aa18.29■□□□□ 0.52
SMAD4-211ENST00000590499 KCNH8Q96L42 1107 aa18.29■□□□□ 0.52
SMAD4-211ENST00000590499 HECW1Q76N89 1606 aa18.28■□□□□ 0.52
SMAD4-211ENST00000590499 ZRANB1Q9UGI0 708 aa18.28■□□□□ 0.52
SMAD4-211ENST00000590499 CD109Q6YHK3 1445 aa18.28■□□□□ 0.52
SMAD4-211ENST00000590499 CREBZFQ9NS37 354 aa18.27■□□□□ 0.52
SMAD4-211ENST00000590499 CDK13Q14004 1512 aaKnown RBP18.26■□□□□ 0.51
SMAD4-211ENST00000590499 COL17A1Q9UMD9 1497 aaPredicted RBP18.25■□□□□ 0.51
SMAD4-211ENST00000590499 LRRIQ1Q96JM4 1722 aa18.24■□□□□ 0.51
SMAD4-211ENST00000590499 CLIP1P30622 1438 aa18.23■□□□□ 0.51
SMAD4-211ENST00000590499 PCF11O94913 1555 aaKnown RBP18.21■□□□□ 0.51
SMAD4-211ENST00000590499 PLEKHD1A6NEE1 506 aa18.19■□□□□ 0.5
SMAD4-211ENST00000590499 CASKIN1Q8WXD9 1431 aa18.19■□□□□ 0.5
SMAD4-211ENST00000590499 GALR2O43603 387 aaPredicted RBP18.17■□□□□ 0.5
SMAD4-211ENST00000590499 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.17■□□□□ 0.5
SMAD4-211ENST00000590499 TTC37Q6PGP7 1564 aa18.17■□□□□ 0.5
SMAD4-211ENST00000590499 FYCO1Q9BQS8 1478 aa18.15■□□□□ 0.5
SMAD4-211ENST00000590499 STAG3Q9UJ98 1225 aa18.15■□□□□ 0.5
SMAD4-211ENST00000590499 ARAP3Q8WWN8 1544 aa18.14■□□□□ 0.49
SMAD4-211ENST00000590499 CEP162Q5TB80 1403 aa18.14■□□□□ 0.49
SMAD4-211ENST00000590499 CCDC18Q5T9S5 1454 aa18.13■□□□□ 0.49
SMAD4-211ENST00000590499 NEO1Q92859 1461 aa18.13■□□□□ 0.49
SMAD4-211ENST00000590499 ATP1B4Q9UN42 357 aaPredicted RBP18.12■□□□□ 0.49
SMAD4-211ENST00000590499 PHLDB1Q86UU1 1377 aa18.11■□□□□ 0.49
SMAD4-211ENST00000590499 TROQ12816 1431 aaPredicted RBP18.11■□□□□ 0.49
SMAD4-211ENST00000590499 KIF14Q15058 1648 aa18.11■□□□□ 0.49
SMAD4-211ENST00000590499 PLSCR2Q9NRY7 297 aa18.1■□□□□ 0.49
SMAD4-211ENST00000590499 SPDYE4A6NLX3 237 aa18.09■□□□□ 0.49
SMAD4-211ENST00000590499 CDK11AQ9UQ88 783 aaPredicted RBP18.08■□□□□ 0.48
SMAD4-211ENST00000590499 LOC105371045A0A1W2PR82 267 aa18.07■□□□□ 0.48
SMAD4-211ENST00000590499 CFAP74Q9C0B2 1584 aa18.07■□□□□ 0.48
SMAD4-211ENST00000590499 MYO5CQ9NQX4 1742 aa18.06■□□□□ 0.48
SMAD4-211ENST00000590499 FRMPD1Q5SYB0 1578 aa18.05■□□□□ 0.48
SMAD4-211ENST00000590499 OTUD5Q96G74 571 aa18.05■□□□□ 0.48
SMAD4-211ENST00000590499 FANCAO15360 1455 aa18.05■□□□□ 0.48
SMAD4-211ENST00000590499 PLCH2O75038 1416 aa18.04■□□□□ 0.48
SMAD4-211ENST00000590499 POTEB2H3BUK9 544 aa18.03■□□□□ 0.48
SMAD4-211ENST00000590499 AKNAQ7Z591 1439 aa18.03■□□□□ 0.48
SMAD4-211ENST00000590499 RICTORQ6R327 1708 aa18.01■□□□□ 0.47
SMAD4-211ENST00000590499 PHF12Q96QT6 1004 aa18■□□□□ 0.47
SMAD4-211ENST00000590499 RAPGEF3O95398 923 aa17.98■□□□□ 0.47
SMAD4-211ENST00000590499 DENND4BO75064 1496 aaPredicted RBP17.98■□□□□ 0.47
SMAD4-211ENST00000590499 CDC42BPBQ9Y5S2 1711 aa17.98■□□□□ 0.47
SMAD4-211ENST00000590499 PREX2Q70Z35 1606 aa17.97■□□□□ 0.47
SMAD4-211ENST00000590499 KDM4FA0A1W2PPD8 638 aa17.96■□□□□ 0.47
SMAD4-211ENST00000590499 PAK3O75914 559 aaPredicted RBP17.96■□□□□ 0.47
SMAD4-211ENST00000590499 ADGRL1O94910 1474 aa17.95■□□□□ 0.46
SMAD4-211ENST00000590499 CDC42BPAQ5VT25 1732 aa17.95■□□□□ 0.46
SMAD4-211ENST00000590499 ZMYM4Q5VZL5 1548 aa17.95■□□□□ 0.46
SMAD4-211ENST00000590499 ARHGAP5Q13017 1502 aa17.93■□□□□ 0.46
SMAD4-211ENST00000590499 VPS8Q8N3P4 1428 aa17.93■□□□□ 0.46
SMAD4-211ENST00000590499 ARHGEF40Q8TER5 1519 aa17.93■□□□□ 0.46
SMAD4-211ENST00000590499 POGZQ7Z3K3 1410 aa17.92■□□□□ 0.46
SMAD4-211ENST00000590499 EFCAB2Q5VUJ9 269 aa17.92■□□□□ 0.46
SMAD4-211ENST00000590499 SCAPERQ9BY12 1400 aa17.91■□□□□ 0.46
SMAD4-211ENST00000590499 MNX1P50219 401 aaPredicted RBP17.91■□□□□ 0.46
SMAD4-211ENST00000590499 EHBP1L1Q8N3D4 1523 aa17.9■□□□□ 0.46
SMAD4-211ENST00000590499 PELP1Q8IZL8 1130 aaKnown RBP17.9■□□□□ 0.46
SMAD4-211ENST00000590499 MTUS2Q5JR59 1369 aa17.89■□□□□ 0.45
SMAD4-211ENST00000590499 ABCC1P33527 1531 aa17.88■□□□□ 0.45
SMAD4-211ENST00000590499 GPATCH8Q9UKJ3 1502 aaKnown RBP17.88■□□□□ 0.45
SMAD4-211ENST00000590499 TIAM1Q13009 1591 aa17.87■□□□□ 0.45
SMAD4-211ENST00000590499 MAGI2Q86UL8 1455 aa17.87■□□□□ 0.45
SMAD4-211ENST00000590499 KDM5CP41229 1560 aa17.87■□□□□ 0.45
SMAD4-211ENST00000590499 ZFYVE16Q7Z3T8 1539 aa17.86■□□□□ 0.45
SMAD4-211ENST00000590499 ITSN2Q9NZM3 1697 aa17.85■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms