RNA–Protein interactions for RNA: ENST00000589349.5

DNMT1-219, Transcript of DNA methyltransferase 1, humanhuman

TSL 4

Gene DNMT1, Length 603 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DNMT1-219ENST00000589349 PDCD7Q8N8D1 485 aaKnown RBP14.99□□□□□ -0.01
DNMT1-219ENST00000589349 CUX2O14529 1486 aa14.98□□□□□ -0.01
DNMT1-219ENST00000589349 POTEFA5A3E0 1075 aa14.98□□□□□ -0.01
DNMT1-219ENST00000589349 NKX1-1Q15270 411 aaPredicted RBP14.98□□□□□ -0.01
DNMT1-219ENST00000589349 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.98□□□□□ -0.01
DNMT1-219ENST00000589349 PDS5BQ9NTI5 1447 aa14.98□□□□□ -0.01
DNMT1-219ENST00000589349 LAMC3Q9Y6N6 1575 aa14.97□□□□□ -0.01
DNMT1-219ENST00000589349 FBXO22Q8NEZ5 403 aa14.96□□□□□ -0.01
DNMT1-219ENST00000589349 CADPSQ9ULU8 1353 aa14.96□□□□□ -0.02
DNMT1-219ENST00000589349 L3MBTL3Q96JM7 780 aaPredicted RBP14.91□□□□□ -0.02
DNMT1-219ENST00000589349 MS4A4AQ96JQ5 239 aa14.91□□□□□ -0.02
DNMT1-219ENST00000589349 TOP2AP11388 1531 aaKnown RBP14.88□□□□□ -0.03
DNMT1-219ENST00000589349 G3V3G9 751 aa14.88□□□□□ -0.03
DNMT1-219ENST00000589349 KIF21AQ7Z4S6 1674 aa14.87□□□□□ -0.03
DNMT1-219ENST00000589349 DPY19L2Q6NUT2 758 aa14.86□□□□□ -0.03
DNMT1-219ENST00000589349 GTPBP6O43824 516 aaPredicted RBP14.85□□□□□ -0.03
DNMT1-219ENST00000589349 LHX8Q68G74 356 aa14.85□□□□□ -0.03
DNMT1-219ENST00000589349 SPRYD3Q8NCJ5 442 aa14.84□□□□□ -0.03
DNMT1-219ENST00000589349 BOLA1Q9Y3E2 137 aa14.83□□□□□ -0.04
DNMT1-219ENST00000589349 POTEB2H3BUK9 544 aa14.82□□□□□ -0.04
DNMT1-219ENST00000589349 MAMSTRQ6ZN01 415 aa14.82□□□□□ -0.04
DNMT1-219ENST00000589349 CEP164Q9UPV0 1460 aa14.81□□□□□ -0.04
DNMT1-219ENST00000589349 THOC2Q8NI27 1593 aaKnown RBP14.81□□□□□ -0.04
DNMT1-219ENST00000589349 FANCD2Q9BXW9 1451 aa14.8□□□□□ -0.04
DNMT1-219ENST00000589349 MRC2Q9UBG0 1479 aa14.8□□□□□ -0.04
DNMT1-219ENST00000589349 PAXIP1Q6ZW49 1069 aaPredicted RBP14.79□□□□□ -0.04
DNMT1-219ENST00000589349 SUPT5HO00267 1087 aaKnown RBP14.77□□□□□ -0.05
DNMT1-219ENST00000589349 CFAP44Q96MT7 982 aa14.77□□□□□ -0.05
DNMT1-219ENST00000589349 SCUBE2Q9NQ36 999 aa14.77□□□□□ -0.05
DNMT1-219ENST00000589349 CFTRP13569 1480 aa14.76□□□□□ -0.05
DNMT1-219ENST00000589349 PPP1R37O75864 691 aa14.76□□□□□ -0.05
DNMT1-219ENST00000589349 MICALL2Q8IY33 904 aa14.76□□□□□ -0.05
DNMT1-219ENST00000589349 CCDC88BA6NC98 1476 aa14.76□□□□□ -0.05
DNMT1-219ENST00000589349 POTEJP0CG39 1038 aa14.75□□□□□ -0.05
DNMT1-219ENST00000589349 C3orf67Q6ZVT6 689 aa14.75□□□□□ -0.05
DNMT1-219ENST00000589349 TMEM121BQ9BXQ6 578 aaPredicted RBP14.75□□□□□ -0.05
DNMT1-219ENST00000589349 EIF2AK3Q9NZJ5 1116 aaKnown RBP14.71□□□□□ -0.05
DNMT1-219ENST00000589349 WDR62O43379 1518 aa14.68□□□□□ -0.06
DNMT1-219ENST00000589349 PLCB2Q00722 1185 aa14.66□□□□□ -0.06
DNMT1-219ENST00000589349 OTUD5Q96G74 571 aa14.64□□□□□ -0.07
DNMT1-219ENST00000589349 URB2Q14146 1524 aaKnown RBP14.61□□□□□ -0.07
DNMT1-219ENST00000589349 SLAIN1Q8ND83 568 aa14.59□□□□□ -0.07
DNMT1-219ENST00000589349 PRDM2Q13029 1718 aa14.55□□□□□ -0.08
DNMT1-219ENST00000589349 TMC2Q8TDI7 906 aa14.54□□□□□ -0.08
DNMT1-219ENST00000589349 TMEM92Q6UXU6 159 aa14.51□□□□□ -0.09
DNMT1-219ENST00000589349 TOPBP1Q92547 1522 aa14.51□□□□□ -0.09
DNMT1-219ENST00000589349 ABCC8Q09428 1581 aa14.49□□□□□ -0.09
DNMT1-219ENST00000589349 PDE4AP27815 886 aa14.49□□□□□ -0.09
DNMT1-219ENST00000589349 GPHNQ9NQX3 736 aaPredicted RBP14.48□□□□□ -0.09
DNMT1-219ENST00000589349 IFT140Q96RY7 1462 aa14.48□□□□□ -0.09
DNMT1-219ENST00000589349 C2orf72A6NCS6 295 aa14.47□□□□□ -0.09
DNMT1-219ENST00000589349 KIF3CO14782 793 aa14.47□□□□□ -0.09
DNMT1-219ENST00000589349 CRISPLD2Q9H0B8 497 aa14.47□□□□□ -0.09
DNMT1-219ENST00000589349 CADPS2Q86UW7 1296 aa14.46□□□□□ -0.09
DNMT1-219ENST00000589349 TSHZ2Q9NRE2 1034 aa14.45□□□□□ -0.1
DNMT1-219ENST00000589349 DNMBPQ6XZF7 1577 aa14.44□□□□□ -0.1
DNMT1-219ENST00000589349 HAP1P54257 671 aaPredicted RBP14.44□□□□□ -0.1
DNMT1-219ENST00000589349 ZNF608Q9ULD9 1512 aaPredicted RBP14.44□□□□□ -0.1
DNMT1-219ENST00000589349 NCKAP5LQ9HCH0 1330 aa14.43□□□□□ -0.1
DNMT1-219ENST00000589349 SNPHO15079 494 aa14.43□□□□□ -0.1
DNMT1-219ENST00000589349 FOXK1P85037 733 aa14.4□□□□□ -0.1
DNMT1-219ENST00000589349 LARP6Q9BRS8 491 aaKnown RBP14.4□□□□□ -0.1
DNMT1-219ENST00000589349 SOGA1O94964 1423 aa14.4□□□□□ -0.1
DNMT1-219ENST00000589349 AQRO60306 1485 aaKnown RBP eCLIP14.38□□□□□ -0.114e-14■■■■■ 38.1
DNMT1-219ENST00000589349 DDX27Q96GQ7 796 aaKnown RBP14.38□□□□□ -0.11
DNMT1-219ENST00000589349 RAD54L2Q9Y4B4 1467 aa14.38□□□□□ -0.11
DNMT1-219ENST00000589349 MFSD10Q14728 455 aa14.37□□□□□ -0.11
DNMT1-219ENST00000589349 POLA1P09884 1462 aaPredicted RBP14.37□□□□□ -0.11
DNMT1-219ENST00000589349 TDRD9Q8NDG6 1382 aaKnown RBP14.36□□□□□ -0.11
DNMT1-219ENST00000589349 DSG2Q14126 1118 aa14.36□□□□□ -0.11
DNMT1-219ENST00000589349 PPP1R15BQ5SWA1 713 aa14.36□□□□□ -0.11
DNMT1-219ENST00000589349 DOK7Q18PE1 504 aa14.34□□□□□ -0.11
DNMT1-219ENST00000589349 PLPP6Q8IY26 295 aa14.34□□□□□ -0.11
DNMT1-219ENST00000589349 FGD5Q6ZNL6 1462 aa14.33□□□□□ -0.12
DNMT1-219ENST00000589349 WDR70Q9NW82 654 aa14.33□□□□□ -0.12
DNMT1-219ENST00000589349 EIF4G3O43432 1585 aaKnown RBP14.33□□□□□ -0.12
DNMT1-219ENST00000589349 CUX1P39880 1505 aa14.31□□□□□ -0.12
DNMT1-219ENST00000589349 RIMBP2O15034 1052 aa14.3□□□□□ -0.12
DNMT1-219ENST00000589349 CHMP7Q8WUX9 453 aaPredicted RBP14.3□□□□□ -0.12
DNMT1-219ENST00000589349 HOXB3P14651 431 aaPredicted RBP14.28□□□□□ -0.12
DNMT1-219ENST00000589349 TARBP1Q13395 1621 aaKnown RBP14.28□□□□□ -0.12
DNMT1-219ENST00000589349 ZNF710Q8N1W2 664 aa14.28□□□□□ -0.12
DNMT1-219ENST00000589349 SLC34A2O95436 690 aa14.26□□□□□ -0.13
DNMT1-219ENST00000589349 ZSWIM6Q9HCJ5 1215 aa14.25□□□□□ -0.13
DNMT1-219ENST00000589349 VSIG10Q8N0Z9 540 aa14.24□□□□□ -0.13
DNMT1-219ENST00000589349 FAM163AQ96GL9 167 aaPredicted RBP14.22□□□□□ -0.13
DNMT1-219ENST00000589349 SNAPC4Q5SXM2 1469 aa14.22□□□□□ -0.13
DNMT1-219ENST00000589349 CYB5RLQ6IPT4 315 aa14.21□□□□□ -0.13
DNMT1-219ENST00000589349 WRNQ14191 1432 aaPredicted RBP eCLIP14.21□□□□□ -0.13
DNMT1-219ENST00000589349 GRIN2BQ13224 1484 aa14.19□□□□□ -0.14
DNMT1-219ENST00000589349 CAMK2BQ13554 666 aa14.19□□□□□ -0.14
DNMT1-219ENST00000589349 E2F4Q16254 413 aa14.19□□□□□ -0.14
DNMT1-219ENST00000589349 GAPVD1Q14C86 1478 aa14.18□□□□□ -0.14
DNMT1-219ENST00000589349 CHD1O14646 1710 aa14.18□□□□□ -0.14
DNMT1-219ENST00000589349 TBC1D12O60347 775 aa14.18□□□□□ -0.14
DNMT1-219ENST00000589349 PTCD2Q8WV60 388 aaKnown RBP14.18□□□□□ -0.14
DNMT1-219ENST00000589349 ST18O60284 1047 aa14.17□□□□□ -0.14
DNMT1-219ENST00000589349 OXER1Q8TDS5 423 aa14.15□□□□□ -0.14
DNMT1-219ENST00000589349 PCDHGA4Q9Y5G9 962 aa14.15□□□□□ -0.14
DNMT1-219ENST00000589349 UPF1Q92900 1129 aaKnown RBP eCLIP14.14□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms