RNA–Protein interactions for RNA: ENST00000587259.5

VMP1-204, Transcript of vacuole membrane protein 1, humanhuman

TSL 4

Gene VMP1, Length 606 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-204ENST00000587259 AKNAQ7Z591 1439 aa12.92□□□□□ -0.34
VMP1-204ENST00000587259 FBXO41Q8TF61 875 aa12.92□□□□□ -0.34
VMP1-204ENST00000587259 YEATS2Q9ULM3 1422 aa12.92□□□□□ -0.34
VMP1-204ENST00000587259 RIMS1Q86UR5 1692 aaKnown RBP12.92□□□□□ -0.34
VMP1-204ENST00000587259 CDK13Q14004 1512 aaKnown RBP12.92□□□□□ -0.34
VMP1-204ENST00000587259 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.92□□□□□ -0.34
VMP1-204ENST00000587259 MLECQ14165 292 aa12.91□□□□□ -0.34
VMP1-204ENST00000587259 RNF39Q9H2S5 420 aa12.91□□□□□ -0.34
VMP1-204ENST00000587259 ARHGEF40Q8TER5 1519 aa12.91□□□□□ -0.34
VMP1-204ENST00000587259 FANCAO15360 1455 aa12.91□□□□□ -0.34
VMP1-204ENST00000587259 DENND4BO75064 1496 aaPredicted RBP12.91□□□□□ -0.34
VMP1-204ENST00000587259 PCF11O94913 1555 aaKnown RBP12.9□□□□□ -0.34
VMP1-204ENST00000587259 RICTORQ6R327 1708 aa12.9□□□□□ -0.34
VMP1-204ENST00000587259 KCNA4P22459 653 aa12.88□□□□□ -0.35
VMP1-204ENST00000587259 ATP1B4Q9UN42 357 aaPredicted RBP12.88□□□□□ -0.35
VMP1-204ENST00000587259 ZFYVE16Q7Z3T8 1539 aa12.85□□□□□ -0.35
VMP1-204ENST00000587259 HECW1Q76N89 1606 aa12.84□□□□□ -0.35
VMP1-204ENST00000587259 EEA1Q15075 1411 aa12.83□□□□□ -0.36
VMP1-204ENST00000587259 SCAPERQ9BY12 1400 aa12.83□□□□□ -0.36
VMP1-204ENST00000587259 ZMYM4Q5VZL5 1548 aa12.83□□□□□ -0.36
VMP1-204ENST00000587259 CEBPAP49715 358 aaPredicted RBP12.82□□□□□ -0.36
VMP1-204ENST00000587259 EFCAB5A4FU69 1503 aa12.82□□□□□ -0.36
VMP1-204ENST00000587259 CFAP74Q9C0B2 1584 aa12.81□□□□□ -0.36
VMP1-204ENST00000587259 PLCH2O75038 1416 aa12.8□□□□□ -0.36
VMP1-204ENST00000587259 POGZQ7Z3K3 1410 aa12.8□□□□□ -0.36
VMP1-204ENST00000587259 UBTFP17480 764 aaKnown RBP12.8□□□□□ -0.36
VMP1-204ENST00000587259 KIF14Q15058 1648 aa12.79□□□□□ -0.36
VMP1-204ENST00000587259 FER1L4A9Z1Z3 1794 aa12.78□□□□□ -0.36
VMP1-204ENST00000587259 ARHGAP35Q9NRY4 1499 aa12.78□□□□□ -0.36
VMP1-204ENST00000587259 AFAP1Q8N556 730 aa12.77□□□□□ -0.37
VMP1-204ENST00000587259 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.76□□□□□ -0.374e-7■□□□□ 10
VMP1-204ENST00000587259 ATP10AO60312 1499 aa12.75□□□□□ -0.37
VMP1-204ENST00000587259 EFCAB2Q5VUJ9 269 aa12.75□□□□□ -0.37
VMP1-204ENST00000587259 MAGI2Q86UL8 1455 aa12.75□□□□□ -0.37
VMP1-204ENST00000587259 CERKQ8TCT0 537 aa12.75□□□□□ -0.37
VMP1-204ENST00000587259 MYT1LQ9UL68 1186 aa12.75□□□□□ -0.37
VMP1-204ENST00000587259 ARHGEF12Q9NZN5 1544 aa12.74□□□□□ -0.37
VMP1-204ENST00000587259 C9orf84Q5VXU9 1444 aa12.74□□□□□ -0.37
VMP1-204ENST00000587259 MYO5CQ9NQX4 1742 aa12.74□□□□□ -0.37
VMP1-204ENST00000587259 ARHGAP5Q13017 1502 aa12.73□□□□□ -0.37
VMP1-204ENST00000587259 LRRIQ1Q96JM4 1722 aa12.73□□□□□ -0.37
VMP1-204ENST00000587259 FMN1Q68DA7 1419 aa12.71□□□□□ -0.37
VMP1-204ENST00000587259 C1QBPQ07021 282 aaKnown RBP12.71□□□□□ -0.37
VMP1-204ENST00000587259 TROQ12816 1431 aaPredicted RBP12.71□□□□□ -0.38
VMP1-204ENST00000587259 ZNF518AQ6AHZ1 1483 aa12.69□□□□□ -0.38
VMP1-204ENST00000587259 TRAPPC8Q9Y2L5 1435 aa12.69□□□□□ -0.38
VMP1-204ENST00000587259 DIP2CQ9Y2E4 1556 aa12.69□□□□□ -0.38
VMP1-204ENST00000587259 CDK11AQ9UQ88 783 aaPredicted RBP12.68□□□□□ -0.38
VMP1-204ENST00000587259 ABCA6Q8N139 1617 aa12.68□□□□□ -0.38
VMP1-204ENST00000587259 KDM5CP41229 1560 aa12.68□□□□□ -0.38
VMP1-204ENST00000587259 PREX1Q8TCU6 1659 aa12.67□□□□□ -0.38
VMP1-204ENST00000587259 STRCQ7RTU9 1775 aa12.67□□□□□ -0.38
VMP1-204ENST00000587259 CDC42BPBQ9Y5S2 1711 aa12.67□□□□□ -0.38
VMP1-204ENST00000587259 CLIP1P30622 1438 aa12.66□□□□□ -0.38
VMP1-204ENST00000587259 UHRF1BP1Q6BDS2 1440 aa12.64□□□□□ -0.39
VMP1-204ENST00000587259 ILDR2Q71H61 639 aa12.63□□□□□ -0.39
VMP1-204ENST00000587259 ZNF777Q9ULD5 760 aaPredicted RBP12.63□□□□□ -0.39
VMP1-204ENST00000587259 ABCC1P33527 1531 aa12.62□□□□□ -0.39
VMP1-204ENST00000587259 C3P01024 1663 aa12.62□□□□□ -0.39
VMP1-204ENST00000587259 PREX2Q70Z35 1606 aa12.62□□□□□ -0.39
VMP1-204ENST00000587259 MLH3Q9UHC1 1453 aa12.61□□□□□ -0.39
VMP1-204ENST00000587259 ITSN2Q9NZM3 1697 aa12.61□□□□□ -0.39
VMP1-204ENST00000587259 DISP3Q9P2K9 1392 aa12.59□□□□□ -0.39
VMP1-204ENST00000587259 KIDINS220Q9ULH0 1771 aa12.59□□□□□ -0.39
VMP1-204ENST00000587259 HNRNPMP52272 730 aaKnown RBP eCLIP12.59□□□□□ -0.39
VMP1-204ENST00000587259 ESF1Q9H501 851 aaKnown RBP12.59□□□□□ -0.39
VMP1-204ENST00000587259 CASKIN1Q8WXD9 1431 aa12.59□□□□□ -0.39
VMP1-204ENST00000587259 CDC42BPAQ5VT25 1732 aa12.58□□□□□ -0.4
VMP1-204ENST00000587259 REREQ9P2R6 1566 aa12.58□□□□□ -0.4
VMP1-204ENST00000587259 AGLP35573 1532 aa12.57□□□□□ -0.4
VMP1-204ENST00000587259 SYCP2Q9BX26 1530 aa12.57□□□□□ -0.4
VMP1-204ENST00000587259 SAMD9LQ8IVG5 1584 aa12.56□□□□□ -0.4
VMP1-204ENST00000587259 CCDC18Q5T9S5 1454 aa12.56□□□□□ -0.4
VMP1-204ENST00000587259 NCKAP5LQ9HCH0 1330 aa12.55□□□□□ -0.4
VMP1-204ENST00000587259 LTBP4Q8N2S1 1624 aa12.55□□□□□ -0.4
VMP1-204ENST00000587259 PTPRTO14522 1441 aa12.54□□□□□ -0.4
VMP1-204ENST00000587259 NCOA1Q15788 1441 aa12.54□□□□□ -0.4
VMP1-204ENST00000587259 SETD1BQ9UPS6 1966 aaKnown RBP12.54□□□□□ -0.4
VMP1-204ENST00000587259 SUPT6HQ7KZ85 1726 aaKnown RBP12.54□□□□□ -0.4
VMP1-204ENST00000587259 GPATCH8Q9UKJ3 1502 aaKnown RBP12.54□□□□□ -0.4
VMP1-204ENST00000587259 SPAG9O60271 1321 aaKnown RBP12.54□□□□□ -0.4
VMP1-204ENST00000587259 ZMYM3Q14202 1370 aa12.53□□□□□ -0.4
VMP1-204ENST00000587259 CAMSAP1Q5T5Y3 1602 aa12.52□□□□□ -0.4
VMP1-204ENST00000587259 ZNF335Q9H4Z2 1342 aaPredicted RBP12.52□□□□□ -0.41
VMP1-204ENST00000587259 ZNF644Q9H582 1327 aaPredicted RBP12.52□□□□□ -0.41
VMP1-204ENST00000587259 FYCO1Q9BQS8 1478 aa12.52□□□□□ -0.41
VMP1-204ENST00000587259 GGT6Q6P531 493 aa12.51□□□□□ -0.41
VMP1-204ENST00000587259 CFDP1Q9UEE9 299 aaPredicted RBP12.5□□□□□ -0.41
VMP1-204ENST00000587259 CNTLNQ9NXG0 1405 aa12.5□□□□□ -0.41
VMP1-204ENST00000587259 ATP7AQ04656 1500 aa12.5□□□□□ -0.41
VMP1-204ENST00000587259 CLTCQ00610 1675 aaKnown RBP12.5□□□□□ -0.41
VMP1-204ENST00000587259 CCNB3Q8WWL7 1395 aa12.48□□□□□ -0.41
VMP1-204ENST00000587259 U3KPZ7 1027 aaPredicted RBP12.48□□□□□ -0.41
VMP1-204ENST00000587259 SPATA31D1Q6ZQQ2 1576 aa12.47□□□□□ -0.41
VMP1-204ENST00000587259 INO80Q9ULG1 1556 aaPredicted RBP12.47□□□□□ -0.41
VMP1-204ENST00000587259 A2MP01023 1474 aa12.47□□□□□ -0.41
VMP1-204ENST00000587259 NPATQ14207 1427 aa12.46□□□□□ -0.41
VMP1-204ENST00000587259 PTPRKQ15262 1439 aa12.46□□□□□ -0.41
VMP1-204ENST00000587259 MROH2AA6NES4 1674 aa12.46□□□□□ -0.41
VMP1-204ENST00000587259 SOCS7O14512 581 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms