RNA–Protein interactions for RNA: ENST00000584437.5

RNF43-208, Transcript of ring finger protein 43, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RNF43, Length 5,575 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF43-208ENST00000584437 DCAF11Q8TEB1 546 aa16.51■□□□□ 0.23
RNF43-208ENST00000584437 ARID4BQ4LE39 1312 aaPredicted RBP16.51■□□□□ 0.23
RNF43-208ENST00000584437 SLKQ9H2G2 1235 aaPredicted RBP16.5■□□□□ 0.23
RNF43-208ENST00000584437 NAP1L2Q9ULW6 460 aaPredicted RBP16.5■□□□□ 0.23
RNF43-208ENST00000584437 GZF1Q9H116 711 aaPredicted RBP16.49■□□□□ 0.23
RNF43-208ENST00000584437 PMFBP1Q8TBY8 1022 aa16.48■□□□□ 0.23
RNF43-208ENST00000584437 MORC1Q86VD1 984 aa16.48■□□□□ 0.23
RNF43-208ENST00000584437 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.48■□□□□ 0.23
RNF43-208ENST00000584437 RB1CC1Q8TDY2 1594 aa16.48■□□□□ 0.23
RNF43-208ENST00000584437 VPS8Q8N3P4 1428 aa16.47■□□□□ 0.23
RNF43-208ENST00000584437 SENP3Q9H4L4 574 aaPredicted RBP16.47■□□□□ 0.23
RNF43-208ENST00000584437 HTATSF1O43719 755 aaKnown RBP16.47■□□□□ 0.23
RNF43-208ENST00000584437 RSPH6AQ9H0K4 717 aa16.46■□□□□ 0.23
RNF43-208ENST00000584437 PDE3BQ13370 1112 aa16.45■□□□□ 0.22
RNF43-208ENST00000584437 KIAA1211Q6ZU35 1233 aa16.44■□□□□ 0.22
RNF43-208ENST00000584437 CALD1Q05682 793 aaKnown RBP16.43■□□□□ 0.22
RNF43-208ENST00000584437 PLEKHG5O94827 1062 aa16.43■□□□□ 0.22
RNF43-208ENST00000584437 TNNT3P45378 269 aaPredicted RBP16.42■□□□□ 0.22
RNF43-208ENST00000584437 ARHGAP35Q9NRY4 1499 aa16.41■□□□□ 0.22
RNF43-208ENST00000584437 TAOK2Q9UL54 1235 aa16.41■□□□□ 0.22
RNF43-208ENST00000584437 BAZ1BQ9UIG0 1483 aaKnown RBP16.41■□□□□ 0.22
RNF43-208ENST00000584437 HSP90AA2PQ14568 343 aaPredicted RBP16.4■□□□□ 0.22
RNF43-208ENST00000584437 AMER1Q5JTC6 1135 aaPredicted RBP16.39■□□□□ 0.21
RNF43-208ENST00000584437 KANK1Q14678 1352 aa16.39■□□□□ 0.21
RNF43-208ENST00000584437 CSPP1Q1MSJ5 1256 aa16.38■□□□□ 0.21
RNF43-208ENST00000584437 TPM4P67936 248 aa16.38■□□□□ 0.21
RNF43-208ENST00000584437 ITPRIPQ8IWB1 547 aa16.38■□□□□ 0.21
RNF43-208ENST00000584437 DDX11L8A8MPP1 907 aa16.37■□□□□ 0.21
RNF43-208ENST00000584437 RAB3GAP2Q9H2M9 1393 aa16.37■□□□□ 0.21
RNF43-208ENST00000584437 TULP1O00294 542 aaPredicted RBP16.37■□□□□ 0.21
RNF43-208ENST00000584437 MFAP1P55081 439 aaKnown RBP16.37■□□□□ 0.21
RNF43-208ENST00000584437 GNL2Q13823 731 aaKnown RBP16.37■□□□□ 0.21
RNF43-208ENST00000584437 PHF14O94880 888 aa16.36■□□□□ 0.21
RNF43-208ENST00000584437 GOLGA2Q08379 1002 aa16.36■□□□□ 0.21
RNF43-208ENST00000584437 FANCIQ9NVI1 1328 aa16.35■□□□□ 0.21
RNF43-208ENST00000584437 ARID3AQ99856 593 aa16.35■□□□□ 0.21
RNF43-208ENST00000584437 RTF1Q92541 710 aaKnown RBP16.34■□□□□ 0.21
RNF43-208ENST00000584437 PHLDB1Q86UU1 1377 aa16.34■□□□□ 0.21
RNF43-208ENST00000584437 GSE1Q14687 1217 aa16.34■□□□□ 0.21
RNF43-208ENST00000584437 ROCK2O75116 1388 aaKnown RBP16.34■□□□□ 0.21
RNF43-208ENST00000584437 SRPK2P78362 688 aaKnown RBP16.34■□□□□ 0.21
RNF43-208ENST00000584437 NLRP13Q86W25 1043 aa16.33■□□□□ 0.2
RNF43-208ENST00000584437 PKD2Q13563 968 aa16.33■□□□□ 0.2
RNF43-208ENST00000584437 CARMIL1Q5VZK9 1371 aa16.33■□□□□ 0.2
RNF43-208ENST00000584437 CHMP4AQ9BY43 222 aa16.32■□□□□ 0.2
RNF43-208ENST00000584437 SOGA1O94964 1423 aa16.32■□□□□ 0.2
RNF43-208ENST00000584437 GOLGA6L1Q8N7Z2 621 aa16.32■□□□□ 0.2
RNF43-208ENST00000584437 APBB1O00213 710 aa16.31■□□□□ 0.2
RNF43-208ENST00000584437 U2AF1L5P0DN76 240 aaPredicted RBP16.31■□□□□ 0.2
RNF43-208ENST00000584437 U2AF1Q01081 240 aaKnown RBP eCLIP16.31■□□□□ 0.24e-11■□□□□ 10.3
RNF43-208ENST00000584437 CCDC34Q96HJ3 373 aa16.31■□□□□ 0.2
RNF43-208ENST00000584437 SKOR2Q2VWA4 1001 aaPredicted RBP16.3■□□□□ 0.2
RNF43-208ENST00000584437 HDGFL2Q7Z4V5 671 aaPredicted RBP16.3■□□□□ 0.2
RNF43-208ENST00000584437 HMMRO75330 724 aa16.3■□□□□ 0.2
RNF43-208ENST00000584437 CENPQQ7L2Z9 268 aaPredicted RBP16.29■□□□□ 0.2
RNF43-208ENST00000584437 MPHOSPH9Q99550 1183 aa16.29■□□□□ 0.2
RNF43-208ENST00000584437 BAZ1AQ9NRL2 1556 aaPredicted RBP16.29■□□□□ 0.2
RNF43-208ENST00000584437 FAM161AQ3B820 660 aa16.29■□□□□ 0.2
RNF43-208ENST00000584437 PDE4AP27815 886 aa16.29■□□□□ 0.2
RNF43-208ENST00000584437 CENPJQ9HC77 1338 aaPredicted RBP16.29■□□□□ 0.2
RNF43-208ENST00000584437 ST18O60284 1047 aa16.28■□□□□ 0.2
RNF43-208ENST00000584437 SMC4Q9NTJ3 1288 aa16.28■□□□□ 0.2
RNF43-208ENST00000584437 FMN1Q68DA7 1419 aa16.28■□□□□ 0.2
RNF43-208ENST00000584437 HDGFP51858 240 aaKnown RBP16.27■□□□□ 0.2
RNF43-208ENST00000584437 KANK4Q5T7N3 995 aaPredicted RBP16.27■□□□□ 0.2
RNF43-208ENST00000584437 LMOD2Q6P5Q4 547 aa16.27■□□□□ 0.19
RNF43-208ENST00000584437 HDAC5Q9UQL6 1122 aa16.27■□□□□ 0.19
RNF43-208ENST00000584437 EIF3AQ14152 1382 aaKnown RBP16.25■□□□□ 0.19
RNF43-208ENST00000584437 GPATCH3Q96I76 525 aa16.25■□□□□ 0.19
RNF43-208ENST00000584437 NACADO15069 1562 aa16.24■□□□□ 0.19
RNF43-208ENST00000584437 NOC3LQ8WTT2 800 aaKnown RBP16.24■□□□□ 0.19
RNF43-208ENST00000584437 NPHP1O15259 732 aa16.23■□□□□ 0.19
RNF43-208ENST00000584437 CUX2O14529 1486 aa16.23■□□□□ 0.19
RNF43-208ENST00000584437 VSIG10Q8N0Z9 540 aa16.23■□□□□ 0.19
RNF43-208ENST00000584437 KIF15Q9NS87 1388 aa16.23■□□□□ 0.19
RNF43-208ENST00000584437 STK31Q9BXU1 1019 aa16.22■□□□□ 0.19
RNF43-208ENST00000584437 ZBED9Q6R2W3 1325 aa16.22■□□□□ 0.19
RNF43-208ENST00000584437 FOXD1Q16676 465 aa16.21■□□□□ 0.19
RNF43-208ENST00000584437 KIF3AQ9Y496 699 aa16.21■□□□□ 0.19
RNF43-208ENST00000584437 DDX49Q9Y6V7 483 aaKnown RBP16.21■□□□□ 0.19
RNF43-208ENST00000584437 MYBBP1AQ9BQG0 1328 aaKnown RBP16.21■□□□□ 0.18
RNF43-208ENST00000584437 TRIM6-TRIM34B2RNG4 842 aa16.2■□□□□ 0.18
RNF43-208ENST00000584437 L3MBTL2Q969R5 705 aa16.2■□□□□ 0.18
RNF43-208ENST00000584437 ANKRD30AQ9BXX3 1397 aa16.19■□□□□ 0.18
RNF43-208ENST00000584437 NUP155O75694 1391 aa16.19■□□□□ 0.18
RNF43-208ENST00000584437 CLUAP1Q96AJ1 413 aa16.19■□□□□ 0.18
RNF43-208ENST00000584437 FOXD4L1Q9NU39 408 aa16.19■□□□□ 0.18
RNF43-208ENST00000584437 ATP6V1DQ9Y5K8 247 aa16.19■□□□□ 0.18
RNF43-208ENST00000584437 SPAG9O60271 1321 aaKnown RBP16.18■□□□□ 0.18
RNF43-208ENST00000584437 KIF16BQ96L93 1317 aa16.18■□□□□ 0.18
RNF43-208ENST00000584437 RRP1P56182 461 aaKnown RBP16.18■□□□□ 0.18
RNF43-208ENST00000584437 LMOD3Q0VAK6 560 aa16.18■□□□□ 0.18
RNF43-208ENST00000584437 EIF4G1Q04637 1599 aaKnown RBP16.17■□□□□ 0.18
RNF43-208ENST00000584437 TPM3P06753 285 aa16.17■□□□□ 0.18
RNF43-208ENST00000584437 HSP90B1P14625 803 aaKnown RBP16.17■□□□□ 0.18
RNF43-208ENST00000584437 SAFB2Q14151 953 aaKnown RBP eCLIP16.16■□□□□ 0.18
RNF43-208ENST00000584437 CGNL1Q0VF96 1302 aa16.16■□□□□ 0.18
RNF43-208ENST00000584437 SOX12O15370 315 aa16.16■□□□□ 0.18
RNF43-208ENST00000584437 CLSTN1O94985 981 aa16.14■□□□□ 0.17
RNF43-208ENST00000584437 CHMP4CQ96CF2 233 aa16.14■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms