RNA–Protein interactions for RNA: ENST00000580127.5

MKS1-209, Transcript of Meckel syndrome, type 1, humanhuman

TSL 5

Gene MKS1, Length 843 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1-209ENST00000580127 RIMS1Q86UR5 1692 aaKnown RBP29.32■■■□□ 2.28
MKS1-209ENST00000580127 ARHGAP35Q9NRY4 1499 aa29.32■■■□□ 2.28
MKS1-209ENST00000580127 MLECQ14165 292 aa29.32■■■□□ 2.28
MKS1-209ENST00000580127 PLPPR3Q6T4P5 718 aa29.32■■■□□ 2.28
MKS1-209ENST00000580127 PCF11O94913 1555 aaKnown RBP29.31■■■□□ 2.28
MKS1-209ENST00000580127 CLIP1P30622 1438 aa29.31■■■□□ 2.28
MKS1-209ENST00000580127 YEATS2Q9ULM3 1422 aa29.3■■■□□ 2.28
MKS1-209ENST00000580127 MYO5CQ9NQX4 1742 aa29.28■■■□□ 2.28
MKS1-209ENST00000580127 MYT1LQ9UL68 1186 aa29.28■■■□□ 2.28
MKS1-209ENST00000580127 ATP10AO60312 1499 aa29.27■■■□□ 2.28
MKS1-209ENST00000580127 TROQ12816 1431 aaPredicted RBP29.25■■■□□ 2.27
MKS1-209ENST00000580127 LMTK3Q96Q04 1460 aa29.24■■■□□ 2.27
MKS1-209ENST00000580127 KIF14Q15058 1648 aa29.23■■■□□ 2.27
MKS1-209ENST00000580127 ARHGAP5Q13017 1502 aa29.2■■■□□ 2.26
MKS1-209ENST00000580127 C9orf84Q5VXU9 1444 aa29.2■■■□□ 2.26
MKS1-209ENST00000580127 ZNF518AQ6AHZ1 1483 aa29.19■■■□□ 2.26
MKS1-209ENST00000580127 HSPA2P54652 639 aa29.18■■■□□ 2.26
MKS1-209ENST00000580127 AFAP1Q8N556 730 aa29.18■■■□□ 2.26
MKS1-209ENST00000580127 FER1L4A9Z1Z3 1794 aa29.16■■■□□ 2.26
MKS1-209ENST00000580127 CCDC18Q5T9S5 1454 aa29.11■■■□□ 2.25
MKS1-209ENST00000580127 ESF1Q9H501 851 aaKnown RBP29.1■■■□□ 2.25
MKS1-209ENST00000580127 SIGLEC1Q9BZZ2 1709 aa29.1■■■□□ 2.25
MKS1-209ENST00000580127 CASKIN1Q8WXD9 1431 aa29.1■■■□□ 2.25
MKS1-209ENST00000580127 ARHGEF12Q9NZN5 1544 aa29.07■■■□□ 2.24
MKS1-209ENST00000580127 DMRT2Q9Y5R5 561 aa29.04■■■□□ 2.24
MKS1-209ENST00000580127 KDM5CP41229 1560 aa29.04■■■□□ 2.24
MKS1-209ENST00000580127 CEBPAP49715 358 aaPredicted RBP29.03■■■□□ 2.24
MKS1-209ENST00000580127 LRRIQ1Q96JM4 1722 aa29.03■■■□□ 2.24
MKS1-209ENST00000580127 SETD1BQ9UPS6 1966 aaKnown RBP29.02■■■□□ 2.24
MKS1-209ENST00000580127 CDC42BPBQ9Y5S2 1711 aa29.02■■■□□ 2.24
MKS1-209ENST00000580127 MLH3Q9UHC1 1453 aa29.02■■■□□ 2.24
MKS1-209ENST00000580127 CERKQ8TCT0 537 aa28.97■■■□□ 2.23
MKS1-209ENST00000580127 PREX2Q70Z35 1606 aa28.97■■■□□ 2.23
MKS1-209ENST00000580127 PREX1Q8TCU6 1659 aa28.96■■■□□ 2.23
MKS1-209ENST00000580127 ZNF777Q9ULD5 760 aaPredicted RBP28.96■■■□□ 2.23
MKS1-209ENST00000580127 FYCO1Q9BQS8 1478 aa28.95■■■□□ 2.22
MKS1-209ENST00000580127 REREQ9P2R6 1566 aa28.95■■■□□ 2.22
MKS1-209ENST00000580127 DIP2CQ9Y2E4 1556 aa28.94■■■□□ 2.22
MKS1-209ENST00000580127 UHRF1BP1Q6BDS2 1440 aa28.93■■■□□ 2.22
MKS1-209ENST00000580127 TRAPPC8Q9Y2L5 1435 aa28.93■■■□□ 2.22
MKS1-209ENST00000580127 ABCC1P33527 1531 aa28.91■■■□□ 2.22
MKS1-209ENST00000580127 AGLP35573 1532 aa28.89■■■□□ 2.22
MKS1-209ENST00000580127 ITSN2Q9NZM3 1697 aa28.87■■■□□ 2.21
MKS1-209ENST00000580127 CDC42BPAQ5VT25 1732 aa28.87■■■□□ 2.21
MKS1-209ENST00000580127 ABCA6Q8N139 1617 aa28.87■■■□□ 2.21
MKS1-209ENST00000580127 CFDP1Q9UEE9 299 aaPredicted RBP28.86■■■□□ 2.21
MKS1-209ENST00000580127 SPAG9O60271 1321 aaKnown RBP28.86■■■□□ 2.21
MKS1-209ENST00000580127 CNTLNQ9NXG0 1405 aa28.85■■■□□ 2.21
MKS1-209ENST00000580127 HNRNPMP52272 730 aaKnown RBP eCLIP28.83■■■□□ 2.21
MKS1-209ENST00000580127 CCNB3Q8WWL7 1395 aa28.81■■■□□ 2.2
MKS1-209ENST00000580127 KIDINS220Q9ULH0 1771 aa28.8■■■□□ 2.2
MKS1-209ENST00000580127 GPATCH8Q9UKJ3 1502 aaKnown RBP28.8■■■□□ 2.2
MKS1-209ENST00000580127 PLEKHH2Q8IVE3 1493 aa28.8■■■□□ 2.2
MKS1-209ENST00000580127 MTUS2Q5JR59 1369 aa28.79■■■□□ 2.2
MKS1-209ENST00000580127 C3P01024 1663 aa28.78■■■□□ 2.2
MKS1-209ENST00000580127 KIAA1107Q9UPP5 1409 aa28.77■■■□□ 2.2
MKS1-209ENST00000580127 SAMD9LQ8IVG5 1584 aa28.76■■■□□ 2.19
MKS1-209ENST00000580127 STRCQ7RTU9 1775 aa28.73■■■□□ 2.19
MKS1-209ENST00000580127 SYCP2Q9BX26 1530 aa28.73■■■□□ 2.19
MKS1-209ENST00000580127 PTPRTO14522 1441 aa28.71■■■□□ 2.19
MKS1-209ENST00000580127 ZMYM3Q14202 1370 aa28.7■■■□□ 2.18
MKS1-209ENST00000580127 PPP6R1Q9UPN7 881 aa28.69■■■□□ 2.18
MKS1-209ENST00000580127 NPATQ14207 1427 aa28.68■■■□□ 2.18
MKS1-209ENST00000580127 ATP7AQ04656 1500 aa28.66■■■□□ 2.18
MKS1-209ENST00000580127 SUPT6HQ7KZ85 1726 aaKnown RBP28.66■■■□□ 2.18
MKS1-209ENST00000580127 GGT6Q6P531 493 aa28.65■■■□□ 2.18
MKS1-209ENST00000580127 MROH2AA6NES4 1674 aa28.64■■■□□ 2.18
MKS1-209ENST00000580127 A2MP01023 1474 aa28.64■■■□□ 2.17
MKS1-209ENST00000580127 RSPH4AQ5TD94 716 aa28.58■■■□□ 2.17
MKS1-209ENST00000580127 NCOA1Q15788 1441 aa28.57■■■□□ 2.16
MKS1-209ENST00000580127 ZNF644Q9H582 1327 aaPredicted RBP28.56■■■□□ 2.16
MKS1-209ENST00000580127 INO80Q9ULG1 1556 aaPredicted RBP28.56■■■□□ 2.16
MKS1-209ENST00000580127 ADGBQ8N7X0 1667 aa28.54■■■□□ 2.16
MKS1-209ENST00000580127 EHBP1L1Q8N3D4 1523 aa28.54■■■□□ 2.16
MKS1-209ENST00000580127 RTEL1-TNFRSF6BF6WH68 1400 aa28.53■■■□□ 2.16
MKS1-209ENST00000580127 PKD2Q13563 968 aa28.53■■■□□ 2.16
MKS1-209ENST00000580127 CLTCQ00610 1675 aaKnown RBP28.53■■■□□ 2.16
MKS1-209ENST00000580127 CEP162Q5TB80 1403 aa28.52■■■□□ 2.16
MKS1-209ENST00000580127 CAMSAP1Q5T5Y3 1602 aa28.52■■■□□ 2.16
MKS1-209ENST00000580127 PLXNC1O60486 1568 aa28.52■■■□□ 2.16
MKS1-209ENST00000580127 TIAM1Q13009 1591 aa28.5■■■□□ 2.15
MKS1-209ENST00000580127 NCKAP5LQ9HCH0 1330 aa28.49■■■□□ 2.15
MKS1-209ENST00000580127 DHX29Q7Z478 1369 aaKnown RBP28.49■■■□□ 2.15
MKS1-209ENST00000580127 MBD5Q9P267 1494 aa28.47■■■□□ 2.15
MKS1-209ENST00000580127 PTPRKQ15262 1439 aa28.47■■■□□ 2.15
MKS1-209ENST00000580127 IQSEC2Q5JU85 1478 aa28.46■■■□□ 2.15
MKS1-209ENST00000580127 KIF3BO15066 747 aa28.45■■■□□ 2.14
MKS1-209ENST00000580127 TSPY4P0CV99 314 aa28.45■■■□□ 2.14
MKS1-209ENST00000580127 TSPY10P0CW01 314 aa28.45■■■□□ 2.14
MKS1-209ENST00000580127 LTBP4Q8N2S1 1624 aa28.42■■■□□ 2.14
MKS1-209ENST00000580127 PLA2R1Q13018 1463 aa28.41■■■□□ 2.14
MKS1-209ENST00000580127 DISP3Q9P2K9 1392 aa28.4■■■□□ 2.14
MKS1-209ENST00000580127 WASHC2CQ9Y4E1 1318 aa28.4■■■□□ 2.14
MKS1-209ENST00000580127 CEP170BQ9Y4F5 1589 aaPredicted RBP28.39■■■□□ 2.14
MKS1-209ENST00000580127 MYO3AQ8NEV4 1616 aa28.39■■■□□ 2.13
MKS1-209ENST00000580127 NCOA2Q15596 1464 aa28.39■■■□□ 2.13
MKS1-209ENST00000580127 CCDC141Q6ZP82 1450 aa28.39■■■□□ 2.13
MKS1-209ENST00000580127 ZNF142P52746 1687 aaPredicted RBP28.38■■■□□ 2.13
MKS1-209ENST00000580127 ZNF335Q9H4Z2 1342 aaPredicted RBP28.34■■■□□ 2.13
MKS1-209ENST00000580127 A2ML1A8K2U0 1454 aa28.34■■■□□ 2.13
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms