RNA–Protein interactions for RNA: ENST00000579483.1

MSI2-209, Transcript of musashi RNA binding protein 2, humanhuman

TSL 1 (best)

Gene MSI2, Length 5,141 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSI2-209ENST00000579483 CSB-PGBD3P0DP91 1061 aa13.38□□□□□ -0.27
MSI2-209ENST00000579483 CFTRP13569 1480 aa13.38□□□□□ -0.27
MSI2-209ENST00000579483 PAK3O75914 559 aaPredicted RBP13.38□□□□□ -0.27
MSI2-209ENST00000579483 AQRO60306 1485 aaKnown RBP eCLIP13.37□□□□□ -0.27
MSI2-209ENST00000579483 RAD54L2Q9Y4B4 1467 aa13.36□□□□□ -0.27
MSI2-209ENST00000579483 IGF1RP08069 1367 aa13.36□□□□□ -0.27
MSI2-209ENST00000579483 ANP32AP39687 249 aaKnown RBP13.36□□□□□ -0.27
MSI2-209ENST00000579483 SAFB2Q14151 953 aaKnown RBP eCLIP13.35□□□□□ -0.27
MSI2-209ENST00000579483 VGFO15240 615 aaPredicted RBP13.35□□□□□ -0.27
MSI2-209ENST00000579483 MS4A1P11836 297 aa13.35□□□□□ -0.27
MSI2-209ENST00000579483 MORC1Q86VD1 984 aa13.35□□□□□ -0.27
MSI2-209ENST00000579483 TERF2IPQ9NYB0 399 aa13.35□□□□□ -0.27
MSI2-209ENST00000579483 CCDC9Q9Y3X0 531 aaKnown RBP13.35□□□□□ -0.27
MSI2-209ENST00000579483 U2SURPO15042 1029 aaKnown RBP13.35□□□□□ -0.27
MSI2-209ENST00000579483 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.35□□□□□ -0.27
MSI2-209ENST00000579483 MPHOSPH9Q99550 1183 aa13.34□□□□□ -0.27
MSI2-209ENST00000579483 WDR97A6NE52 1622 aa13.34□□□□□ -0.27
MSI2-209ENST00000579483 NGDNQ8NEJ9 315 aaKnown RBP13.33□□□□□ -0.28
MSI2-209ENST00000579483 RTF1Q92541 710 aaKnown RBP13.33□□□□□ -0.28
MSI2-209ENST00000579483 KANK4Q5T7N3 995 aaPredicted RBP13.31□□□□□ -0.28
MSI2-209ENST00000579483 HIRIP3Q9BW71 556 aaPredicted RBP13.31□□□□□ -0.28
MSI2-209ENST00000579483 SIN3AQ96ST3 1273 aa13.3□□□□□ -0.28
MSI2-209ENST00000579483 SOX12O15370 315 aa13.3□□□□□ -0.28
MSI2-209ENST00000579483 CCDC136Q96JN2 1154 aa13.3□□□□□ -0.28
MSI2-209ENST00000579483 CALD1Q05682 793 aaKnown RBP13.29□□□□□ -0.28
MSI2-209ENST00000579483 LAS1LQ9Y4W2 734 aaKnown RBP13.29□□□□□ -0.28
MSI2-209ENST00000579483 TNNT2P45379 298 aaPredicted RBP13.29□□□□□ -0.28
MSI2-209ENST00000579483 TMX4Q9H1E5 349 aaPredicted RBP13.29□□□□□ -0.28
MSI2-209ENST00000579483 PRG4Q92954 1404 aaPredicted RBP13.29□□□□□ -0.28
MSI2-209ENST00000579483 ROCK2O75116 1388 aaKnown RBP13.29□□□□□ -0.28
MSI2-209ENST00000579483 FTSJ3Q8IY81 847 aaKnown RBP13.29□□□□□ -0.28
MSI2-209ENST00000579483 SYNJ2O15056 1496 aa13.28□□□□□ -0.28
MSI2-209ENST00000579483 GOLGA2Q08379 1002 aa13.27□□□□□ -0.29
MSI2-209ENST00000579483 STAC3Q96MF2 364 aa13.26□□□□□ -0.29
MSI2-209ENST00000579483 NEUROD2Q15784 382 aa13.25□□□□□ -0.29
MSI2-209ENST00000579483 CCDC144AA2RUR9 1427 aa13.25□□□□□ -0.29
MSI2-209ENST00000579483 MYOM3Q5VTT5 1437 aa13.25□□□□□ -0.29
MSI2-209ENST00000579483 NESP48681 1621 aa13.25□□□□□ -0.29
MSI2-209ENST00000579483 CC2D1BQ5T0F9 858 aaKnown RBP13.25□□□□□ -0.29
MSI2-209ENST00000579483 CASC1Q6TDU7 716 aa13.24□□□□□ -0.29
MSI2-209ENST00000579483 POGZQ7Z3K3 1410 aa13.24□□□□□ -0.29
MSI2-209ENST00000579483 DNMBPQ6XZF7 1577 aa13.23□□□□□ -0.29
MSI2-209ENST00000579483 TOPBP1Q92547 1522 aa13.23□□□□□ -0.29
MSI2-209ENST00000579483 GTF3C3Q9Y5Q9 886 aa13.22□□□□□ -0.29
MSI2-209ENST00000579483 ANP32BQ92688 251 aaKnown RBP13.21□□□□□ -0.29
MSI2-209ENST00000579483 FKBP8Q14318 412 aa13.21□□□□□ -0.3
MSI2-209ENST00000579483 PRDM2Q13029 1718 aa13.21□□□□□ -0.3
MSI2-209ENST00000579483 HDAC5Q9UQL6 1122 aa13.2□□□□□ -0.3
MSI2-209ENST00000579483 OS9Q13438 667 aaPredicted RBP13.2□□□□□ -0.3
MSI2-209ENST00000579483 KTN1Q86UP2 1357 aaKnown RBP13.2□□□□□ -0.3
MSI2-209ENST00000579483 MEX3CQ5U5Q3 659 aaKnown RBP13.2□□□□□ -0.3
MSI2-209ENST00000579483 AMPHP49418 695 aa13.2□□□□□ -0.3
MSI2-209ENST00000579483 ATF3P18847 181 aa13.19□□□□□ -0.3
MSI2-209ENST00000579483 RAB3GAP2Q9H2M9 1393 aa13.19□□□□□ -0.3
MSI2-209ENST00000579483 PLEKHH2Q8IVE3 1493 aa13.18□□□□□ -0.3
MSI2-209ENST00000579483 CUX1P39880 1505 aa13.17□□□□□ -0.3
MSI2-209ENST00000579483 SNAPC4Q5SXM2 1469 aa13.17□□□□□ -0.3
MSI2-209ENST00000579483 EVA1CP58658 441 aa13.17□□□□□ -0.3
MSI2-209ENST00000579483 FOXD1Q16676 465 aa13.17□□□□□ -0.3
MSI2-209ENST00000579483 EVC2Q86UK5 1308 aa13.16□□□□□ -0.3
MSI2-209ENST00000579483 LMOD3Q0VAK6 560 aa13.16□□□□□ -0.3
MSI2-209ENST00000579483 NUTM2DQ5VT03 806 aaPredicted RBP13.15□□□□□ -0.3
MSI2-209ENST00000579483 DNAJC5BQ9UF47 199 aa13.15□□□□□ -0.3
MSI2-209ENST00000579483 RALBP1Q15311 655 aa13.15□□□□□ -0.3
MSI2-209ENST00000579483 POLA1P09884 1462 aaPredicted RBP13.15□□□□□ -0.3
MSI2-209ENST00000579483 THEMISQ8N1K5 641 aaPredicted RBP13.15□□□□□ -0.3
MSI2-209ENST00000579483 TRAK1Q9UPV9 953 aa13.14□□□□□ -0.31
MSI2-209ENST00000579483 U2AF1L5P0DN76 240 aaPredicted RBP13.13□□□□□ -0.31
MSI2-209ENST00000579483 HSPA5P11021 654 aaKnown RBP13.13□□□□□ -0.31
MSI2-209ENST00000579483 U2AF1Q01081 240 aaKnown RBP eCLIP13.13□□□□□ -0.31
MSI2-209ENST00000579483 ARHGAP5Q13017 1502 aa13.13□□□□□ -0.31
MSI2-209ENST00000579483 CDK11BP21127 795 aaKnown RBP13.13□□□□□ -0.31
MSI2-209ENST00000579483 IPO8O15397 1037 aaKnown RBP13.13□□□□□ -0.31
MSI2-209ENST00000579483 KIF15Q9NS87 1388 aa13.13□□□□□ -0.31
MSI2-209ENST00000579483 CASKIN1Q8WXD9 1431 aa13.11□□□□□ -0.31
MSI2-209ENST00000579483 PSME1Q06323 249 aa13.11□□□□□ -0.31
MSI2-209ENST00000579483 COG3Q96JB2 828 aa13.11□□□□□ -0.31
MSI2-209ENST00000579483 STK31Q9BXU1 1019 aa13.1□□□□□ -0.31
MSI2-209ENST00000579483 CFAP44Q96MT7 982 aa13.1□□□□□ -0.31
MSI2-209ENST00000579483 DHX57Q6P158 1386 aaKnown RBP13.1□□□□□ -0.31
MSI2-209ENST00000579483 EFCAB5A4FU69 1503 aa13.09□□□□□ -0.31
MSI2-209ENST00000579483 KIAA0586Q9BVV6 1533 aa13.09□□□□□ -0.31
MSI2-209ENST00000579483 RUSC2Q8N2Y8 1516 aa13.09□□□□□ -0.31
MSI2-209ENST00000579483 FRAT1Q92837 279 aaPredicted RBP13.09□□□□□ -0.31
MSI2-209ENST00000579483 FYCO1Q9BQS8 1478 aa13.09□□□□□ -0.31
MSI2-209ENST00000579483 ERICH3Q5RHP9 1530 aa13.09□□□□□ -0.31
MSI2-209ENST00000579483 L3MBTL2Q969R5 705 aa13.09□□□□□ -0.31
MSI2-209ENST00000579483 ZNF330Q9Y3S2 320 aaPredicted RBP13.08□□□□□ -0.32
MSI2-209ENST00000579483 MAGI1Q96QZ7 1491 aaPredicted RBP13.08□□□□□ -0.32
MSI2-209ENST00000579483 NUTM2FA1L443 756 aa13.08□□□□□ -0.32
MSI2-209ENST00000579483 BECN1Q14457 450 aa13.07□□□□□ -0.32
MSI2-209ENST00000579483 NCLP19338 710 aaKnown RBP13.06□□□□□ -0.32
MSI2-209ENST00000579483 C1orf141Q5JVX7 400 aa13.06□□□□□ -0.32
MSI2-209ENST00000579483 DCAF8L1A6NGE4 600 aa13.06□□□□□ -0.32
MSI2-209ENST00000579483 GTF2E1P29083 439 aaPredicted RBP13.06□□□□□ -0.32
MSI2-209ENST00000579483 TOP2BQ02880 1626 aa13.05□□□□□ -0.32
MSI2-209ENST00000579483 TXNDC2Q86VQ3 553 aa13.05□□□□□ -0.32
MSI2-209ENST00000579483 MIER1Q8N108 512 aa13.05□□□□□ -0.32
MSI2-209ENST00000579483 CGNL1Q0VF96 1302 aa13.05□□□□□ -0.32
MSI2-209ENST00000579483 AFAP1Q8N556 730 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms