RNA–Protein interactions for RNA: ENST00000575711.1

RPAIN-217, Transcript of RPA interacting protein, humanhuman

TSL 2

Gene RPAIN, Length 732 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPAIN-217ENST00000575711 GPATCH8Q9UKJ3 1502 aaKnown RBP21.73■■□□□ 1.07
RPAIN-217ENST00000575711 PREX2Q70Z35 1606 aa21.72■■□□□ 1.07
RPAIN-217ENST00000575711 PHLDB1Q86UU1 1377 aa21.72■■□□□ 1.07
RPAIN-217ENST00000575711 CFAP74Q9C0B2 1584 aa21.71■■□□□ 1.07
RPAIN-217ENST00000575711 CDC42BPAQ5VT25 1732 aa21.69■■□□□ 1.06
RPAIN-217ENST00000575711 CFDP1Q9UEE9 299 aaPredicted RBP21.69■■□□□ 1.06
RPAIN-217ENST00000575711 AKNAQ7Z591 1439 aa21.68■■□□□ 1.06
RPAIN-217ENST00000575711 ITSN2Q9NZM3 1697 aa21.68■■□□□ 1.06
RPAIN-217ENST00000575711 CDC42BPBQ9Y5S2 1711 aa21.67■■□□□ 1.06
RPAIN-217ENST00000575711 PPARGC1BQ86YN6 1023 aaKnown RBP21.66■■□□□ 1.06
RPAIN-217ENST00000575711 KDM6BO15054 1643 aa21.65■■□□□ 1.06
RPAIN-217ENST00000575711 ZNF777Q9ULD5 760 aaPredicted RBP21.64■■□□□ 1.05
RPAIN-217ENST00000575711 MYOM3Q5VTT5 1437 aa21.63■■□□□ 1.05
RPAIN-217ENST00000575711 ADGRL1O94910 1474 aa21.63■■□□□ 1.05
RPAIN-217ENST00000575711 COL17A1Q9UMD9 1497 aaPredicted RBP21.6■■□□□ 1.05
RPAIN-217ENST00000575711 SCAPERQ9BY12 1400 aa21.6■■□□□ 1.05
RPAIN-217ENST00000575711 MIA2Q96PC5 1412 aa21.59■■□□□ 1.05
RPAIN-217ENST00000575711 DENND4BO75064 1496 aaPredicted RBP21.58■■□□□ 1.05
RPAIN-217ENST00000575711 SAMD9LQ8IVG5 1584 aa21.58■■□□□ 1.05
RPAIN-217ENST00000575711 PLEKHH2Q8IVE3 1493 aa21.58■■□□□ 1.04
RPAIN-217ENST00000575711 ABCC1P33527 1531 aa21.57■■□□□ 1.04
RPAIN-217ENST00000575711 PHF23Q9BUL5 403 aaPredicted RBP21.57■■□□□ 1.04
RPAIN-217ENST00000575711 RAPGEF3O95398 923 aa21.55■■□□□ 1.04
RPAIN-217ENST00000575711 KIAA1107Q9UPP5 1409 aa21.55■■□□□ 1.04
RPAIN-217ENST00000575711 ZNF644Q9H582 1327 aaPredicted RBP21.55■■□□□ 1.04
RPAIN-217ENST00000575711 CAMSAP2Q08AD1 1489 aa21.54■■□□□ 1.04
RPAIN-217ENST00000575711 FGD6Q6ZV73 1430 aa21.54■■□□□ 1.04
RPAIN-217ENST00000575711 POGZQ7Z3K3 1410 aa21.54■■□□□ 1.04
RPAIN-217ENST00000575711 SYCP2Q9BX26 1530 aa21.53■■□□□ 1.04
RPAIN-217ENST00000575711 ARHGEF12Q9NZN5 1544 aa21.52■■□□□ 1.04
RPAIN-217ENST00000575711 HNRNPMP52272 730 aaKnown RBP eCLIP21.51■■□□□ 1.03
RPAIN-217ENST00000575711 ZNF518AQ6AHZ1 1483 aa21.51■■□□□ 1.03
RPAIN-217ENST00000575711 FRMPD1Q5SYB0 1578 aa21.49■■□□□ 1.03
RPAIN-217ENST00000575711 TRAPPC8Q9Y2L5 1435 aa21.49■■□□□ 1.03
RPAIN-217ENST00000575711 PTPN23Q9H3S7 1636 aa21.49■■□□□ 1.03
RPAIN-217ENST00000575711 RICTORQ6R327 1708 aa21.49■■□□□ 1.03
RPAIN-217ENST00000575711 AFAP1Q8N556 730 aa21.47■■□□□ 1.03
RPAIN-217ENST00000575711 TCOF1Q13428 1488 aaKnown RBP21.46■■□□□ 1.03
RPAIN-217ENST00000575711 MBD5Q9P267 1494 aa21.46■■□□□ 1.03
RPAIN-217ENST00000575711 RSPH4AQ5TD94 716 aa21.46■■□□□ 1.03
RPAIN-217ENST00000575711 ZMYM4Q5VZL5 1548 aa21.45■■□□□ 1.02
RPAIN-217ENST00000575711 KDM5CP41229 1560 aa21.44■■□□□ 1.02
RPAIN-217ENST00000575711 FAM50AQ14320 339 aaKnown RBP21.43■■□□□ 1.02
RPAIN-217ENST00000575711 MYT1LQ9UL68 1186 aa21.43■■□□□ 1.02
RPAIN-217ENST00000575711 CCDC141Q6ZP82 1450 aa21.43■■□□□ 1.02
RPAIN-217ENST00000575711 ARHGEF5Q12774 1597 aa21.42■■□□□ 1.02
RPAIN-217ENST00000575711 MAGI2Q86UL8 1455 aa21.42■■□□□ 1.02
RPAIN-217ENST00000575711 SPAG9O60271 1321 aaKnown RBP21.41■■□□□ 1.02
RPAIN-217ENST00000575711 MLH3Q9UHC1 1453 aa21.39■■□□□ 1.02
RPAIN-217ENST00000575711 HECW2Q9P2P5 1572 aa21.39■■□□□ 1.01
RPAIN-217ENST00000575711 RRBP1Q9P2E9 1410 aaKnown RBP21.38■■□□□ 1.01
RPAIN-217ENST00000575711 TSPY4P0CV99 314 aa21.38■■□□□ 1.01
RPAIN-217ENST00000575711 TSPY10P0CW01 314 aa21.38■■□□□ 1.01
RPAIN-217ENST00000575711 ZFYVE16Q7Z3T8 1539 aa21.38■■□□□ 1.01
RPAIN-217ENST00000575711 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.36■■□□□ 1.01
RPAIN-217ENST00000575711 YEATS2Q9ULM3 1422 aa21.36■■□□□ 1.01
RPAIN-217ENST00000575711 ARHGEF40Q8TER5 1519 aa21.35■■□□□ 1.01
RPAIN-217ENST00000575711 ABCC5O15440 1437 aa21.35■■□□□ 1.01
RPAIN-217ENST00000575711 DAPK1P53355 1430 aa21.35■■□□□ 1.01
RPAIN-217ENST00000575711 DNMT1P26358 1616 aaKnown RBP21.34■■□□□ 1.01
RPAIN-217ENST00000575711 ATP7AQ04656 1500 aa21.34■■□□□ 1.01
RPAIN-217ENST00000575711 RTEL1-TNFRSF6BF6WH68 1400 aa21.33■■□□□ 1.01
RPAIN-217ENST00000575711 INO80Q9ULG1 1556 aaPredicted RBP21.32■■□□□ 1
RPAIN-217ENST00000575711 C9orf84Q5VXU9 1444 aa21.32■■□□□ 1
RPAIN-217ENST00000575711 SHANK2Q9UPX8 1470 aa21.32■■□□□ 1
RPAIN-217ENST00000575711 KIDINS220Q9ULH0 1771 aa21.31■■□□□ 1
RPAIN-217ENST00000575711 MAST1Q9Y2H9 1570 aa21.3■■□□□ 1
RPAIN-217ENST00000575711 ATP10AO60312 1499 aa21.29■■□□□ 1
RPAIN-217ENST00000575711 CROCC2H7BZ55 1655 aa21.28■■□□□ 1
RPAIN-217ENST00000575711 DIP2CQ9Y2E4 1556 aa21.28■■□□□ 1
RPAIN-217ENST00000575711 ABCA6Q8N139 1617 aa21.28■■□□□ 1
RPAIN-217ENST00000575711 ITGAEP38570 1179 aa21.26■□□□□ 0.99
RPAIN-217ENST00000575711 CHIC2Q9UKJ5 165 aa21.25■□□□□ 0.99
RPAIN-217ENST00000575711 REREQ9P2R6 1566 aa21.23■□□□□ 0.99
RPAIN-217ENST00000575711 ANKRD30AQ9BXX3 1397 aa21.23■□□□□ 0.99
RPAIN-217ENST00000575711 A2MP01023 1474 aa21.22■□□□□ 0.99
RPAIN-217ENST00000575711 ARID4BQ4LE39 1312 aaPredicted RBP21.22■□□□□ 0.99
RPAIN-217ENST00000575711 PLXNC1O60486 1568 aa21.22■□□□□ 0.99
RPAIN-217ENST00000575711 PTPRKQ15262 1439 aa21.21■□□□□ 0.99
RPAIN-217ENST00000575711 ADGBQ8N7X0 1667 aa21.21■□□□□ 0.99
RPAIN-217ENST00000575711 ADGRL2O95490 1459 aa21.2■□□□□ 0.98
RPAIN-217ENST00000575711 RRP7BPQ9NSQ0 103 aa21.19■□□□□ 0.98
RPAIN-217ENST00000575711 DHX29Q7Z478 1369 aaKnown RBP21.19■□□□□ 0.98
RPAIN-217ENST00000575711 KIF15Q9NS87 1388 aa21.19■□□□□ 0.98
RPAIN-217ENST00000575711 NCOA1Q15788 1441 aa21.19■□□□□ 0.98
RPAIN-217ENST00000575711 ROCK1Q13464 1354 aa21.17■□□□□ 0.98
RPAIN-217ENST00000575711 AGLP35573 1532 aa21.16■□□□□ 0.98
RPAIN-217ENST00000575711 DUOX2Q9NRD8 1548 aa21.15■□□□□ 0.98
RPAIN-217ENST00000575711 SIGLEC1Q9BZZ2 1709 aa21.14■□□□□ 0.97
RPAIN-217ENST00000575711 ERBINQ96RT1 1412 aa21.11■□□□□ 0.97
RPAIN-217ENST00000575711 KIF3BO15066 747 aa21.1■□□□□ 0.97
RPAIN-217ENST00000575711 MLECQ14165 292 aa21.1■□□□□ 0.97
RPAIN-217ENST00000575711 BCORL1Q5H9F3 1711 aa21.07■□□□□ 0.96
RPAIN-217ENST00000575711 ANKRD50Q9ULJ7 1429 aa21.07■□□□□ 0.96
RPAIN-217ENST00000575711 EIF2AK4Q9P2K8 1649 aaKnown RBP21.07■□□□□ 0.96
RPAIN-217ENST00000575711 GGT6Q6P531 493 aa21.06■□□□□ 0.96
RPAIN-217ENST00000575711 HFM1A2PYH4 1435 aa21.03■□□□□ 0.96
RPAIN-217ENST00000575711 NAIPQ13075 1403 aa21.02■□□□□ 0.96
RPAIN-217ENST00000575711 KDM4FA0A1W2PPD8 638 aa21.01■□□□□ 0.95
RPAIN-217ENST00000575711 ESF1Q9H501 851 aaKnown RBP21.01■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms