RNA–Protein interactions for RNA: ENST00000573936.5

CHD3-216, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 749 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-216ENST00000573936 KIF14Q15058 1648 aa17.36■□□□□ 0.37
CHD3-216ENST00000573936 BCORL1Q5H9F3 1711 aa17.35■□□□□ 0.37
CHD3-216ENST00000573936 APLP2Q06481 763 aa17.35■□□□□ 0.37
CHD3-216ENST00000573936 DENND4BO75064 1496 aaPredicted RBP17.35■□□□□ 0.37
CHD3-216ENST00000573936 PTPRMP28827 1452 aa17.34■□□□□ 0.37
CHD3-216ENST00000573936 AKNAQ7Z591 1439 aa17.34■□□□□ 0.37
CHD3-216ENST00000573936 MADDQ8WXG6 1647 aa17.34■□□□□ 0.37
CHD3-216ENST00000573936 MAP3K1Q13233 1512 aa17.32■□□□□ 0.36
CHD3-216ENST00000573936 PLCH2O75038 1416 aa17.32■□□□□ 0.36
CHD3-216ENST00000573936 ZMYM4Q5VZL5 1548 aa17.31■□□□□ 0.36
CHD3-216ENST00000573936 TIAM1Q13009 1591 aa17.3■□□□□ 0.36
CHD3-216ENST00000573936 EHBP1L1Q8N3D4 1523 aa17.3■□□□□ 0.36
CHD3-216ENST00000573936 EFCAB2Q5VUJ9 269 aa17.29■□□□□ 0.36
CHD3-216ENST00000573936 ZFYVE16Q7Z3T8 1539 aa17.28■□□□□ 0.36
CHD3-216ENST00000573936 RIMS1Q86UR5 1692 aaKnown RBP17.28■□□□□ 0.36
CHD3-216ENST00000573936 SIGLEC1Q9BZZ2 1709 aa17.27■□□□□ 0.35
CHD3-216ENST00000573936 YEATS2Q9ULM3 1422 aa17.26■□□□□ 0.35
CHD3-216ENST00000573936 MYO5CQ9NQX4 1742 aa17.26■□□□□ 0.35
CHD3-216ENST00000573936 CCNB3Q8WWL7 1395 aa17.25■□□□□ 0.35
CHD3-216ENST00000573936 LRRC9Q6ZRR7 1453 aa17.24■□□□□ 0.35
CHD3-216ENST00000573936 POGZQ7Z3K3 1410 aa17.24■□□□□ 0.35
CHD3-216ENST00000573936 PLPPR3Q6T4P5 718 aa17.24■□□□□ 0.35
CHD3-216ENST00000573936 ARHGAP5Q13017 1502 aa17.23■□□□□ 0.35
CHD3-216ENST00000573936 SCAPERQ9BY12 1400 aa17.22■□□□□ 0.35
CHD3-216ENST00000573936 MAGI2Q86UL8 1455 aa17.21■□□□□ 0.35
CHD3-216ENST00000573936 KANK4Q5T7N3 995 aaPredicted RBP17.21■□□□□ 0.35
CHD3-216ENST00000573936 SUPT6HQ7KZ85 1726 aaKnown RBP17.21■□□□□ 0.35
CHD3-216ENST00000573936 GPATCH8Q9UKJ3 1502 aaKnown RBP17.21■□□□□ 0.34
CHD3-216ENST00000573936 CFDP1Q9UEE9 299 aaPredicted RBP17.2■□□□□ 0.34
CHD3-216ENST00000573936 LMTK3Q96Q04 1460 aa17.19■□□□□ 0.34
CHD3-216ENST00000573936 PREX2Q70Z35 1606 aa17.19■□□□□ 0.34
CHD3-216ENST00000573936 NCOA2Q15596 1464 aa17.18■□□□□ 0.34
CHD3-216ENST00000573936 FER1L4A9Z1Z3 1794 aa17.18■□□□□ 0.34
CHD3-216ENST00000573936 CDC42BPBQ9Y5S2 1711 aa17.17■□□□□ 0.34
CHD3-216ENST00000573936 CDC42BPAQ5VT25 1732 aa17.16■□□□□ 0.34
CHD3-216ENST00000573936 ZNF777Q9ULD5 760 aaPredicted RBP17.16■□□□□ 0.34
CHD3-216ENST00000573936 MLECQ14165 292 aa17.15■□□□□ 0.34
CHD3-216ENST00000573936 HSPA2P54652 639 aa17.14■□□□□ 0.33
CHD3-216ENST00000573936 ITSN2Q9NZM3 1697 aa17.13■□□□□ 0.33
CHD3-216ENST00000573936 C9orf84Q5VXU9 1444 aa17.13■□□□□ 0.33
CHD3-216ENST00000573936 ZNF518AQ6AHZ1 1483 aa17.13■□□□□ 0.33
CHD3-216ENST00000573936 PLEKHH2Q8IVE3 1493 aa17.13■□□□□ 0.33
CHD3-216ENST00000573936 ATP10AO60312 1499 aa17.12■□□□□ 0.33
CHD3-216ENST00000573936 KDM5CP41229 1560 aa17.12■□□□□ 0.33
CHD3-216ENST00000573936 KIAA1107Q9UPP5 1409 aa17.11■□□□□ 0.33
CHD3-216ENST00000573936 ARHGEF12Q9NZN5 1544 aa17.11■□□□□ 0.33
CHD3-216ENST00000573936 ABCC1P33527 1531 aa17.1■□□□□ 0.33
CHD3-216ENST00000573936 DIP2CQ9Y2E4 1556 aa17.09■□□□□ 0.33
CHD3-216ENST00000573936 SAMD9LQ8IVG5 1584 aa17.08■□□□□ 0.32
CHD3-216ENST00000573936 MYOM3Q5VTT5 1437 aa17.08■□□□□ 0.32
CHD3-216ENST00000573936 MIA2Q96PC5 1412 aa17.08■□□□□ 0.32
CHD3-216ENST00000573936 AFAP1Q8N556 730 aa17.08■□□□□ 0.32
CHD3-216ENST00000573936 ABCA6Q8N139 1617 aa17.07■□□□□ 0.32
CHD3-216ENST00000573936 HNRNPMP52272 730 aaKnown RBP eCLIP17.07■□□□□ 0.32
CHD3-216ENST00000573936 RSPH4AQ5TD94 716 aa17.07■□□□□ 0.32
CHD3-216ENST00000573936 CERKQ8TCT0 537 aa17.07■□□□□ 0.32
CHD3-216ENST00000573936 MYT1LQ9UL68 1186 aa17.06■□□□□ 0.32
CHD3-216ENST00000573936 ZNF644Q9H582 1327 aaPredicted RBP17.05■□□□□ 0.32
CHD3-216ENST00000573936 TRAPPC8Q9Y2L5 1435 aa17.04■□□□□ 0.32
CHD3-216ENST00000573936 SYCP2Q9BX26 1530 aa17.04■□□□□ 0.32
CHD3-216ENST00000573936 PREX1Q8TCU6 1659 aa17.03■□□□□ 0.32
CHD3-216ENST00000573936 REREQ9P2R6 1566 aa17.02■□□□□ 0.32
CHD3-216ENST00000573936 CAMSAP2Q08AD1 1489 aa17.02■□□□□ 0.32
CHD3-216ENST00000573936 MLH3Q9UHC1 1453 aa17.01■□□□□ 0.31
CHD3-216ENST00000573936 DMRT2Q9Y5R5 561 aa17.01■□□□□ 0.31
CHD3-216ENST00000573936 SPAG9O60271 1321 aaKnown RBP17■□□□□ 0.31
CHD3-216ENST00000573936 MBD5Q9P267 1494 aa17■□□□□ 0.31
CHD3-216ENST00000573936 SOCS7O14512 581 aa16.99■□□□□ 0.31
CHD3-216ENST00000573936 FGD6Q6ZV73 1430 aa16.98■□□□□ 0.31
CHD3-216ENST00000573936 KIDINS220Q9ULH0 1771 aa16.98■□□□□ 0.31
CHD3-216ENST00000573936 TSPY4P0CV99 314 aa16.98■□□□□ 0.31
CHD3-216ENST00000573936 TSPY10P0CW01 314 aa16.98■□□□□ 0.31
CHD3-216ENST00000573936 CEBPAP49715 358 aaPredicted RBP16.98■□□□□ 0.31
CHD3-216ENST00000573936 PPARGC1BQ86YN6 1023 aaKnown RBP16.96■□□□□ 0.31
CHD3-216ENST00000573936 ESF1Q9H501 851 aaKnown RBP16.96■□□□□ 0.31
CHD3-216ENST00000573936 DISP3Q9P2K9 1392 aa16.96■□□□□ 0.31
CHD3-216ENST00000573936 CCDC141Q6ZP82 1450 aa16.96■□□□□ 0.31
CHD3-216ENST00000573936 AGLP35573 1532 aa16.96■□□□□ 0.3
CHD3-216ENST00000573936 C3P01024 1663 aa16.95■□□□□ 0.3
CHD3-216ENST00000573936 ARHGEF5Q12774 1597 aa16.95■□□□□ 0.3
CHD3-216ENST00000573936 ILDR2Q71H61 639 aa16.95■□□□□ 0.3
CHD3-216ENST00000573936 PTPN23Q9H3S7 1636 aa16.95■□□□□ 0.3
CHD3-216ENST00000573936 RTEL1-TNFRSF6BF6WH68 1400 aa16.95■□□□□ 0.3
CHD3-216ENST00000573936 TCOF1Q13428 1488 aaKnown RBP16.94■□□□□ 0.3
CHD3-216ENST00000573936 UHRF1BP1Q6BDS2 1440 aa16.93■□□□□ 0.3
CHD3-216ENST00000573936 ATP7AQ04656 1500 aa16.91■□□□□ 0.3
CHD3-216ENST00000573936 FAM50AQ14320 339 aaKnown RBP16.9■□□□□ 0.3
CHD3-216ENST00000573936 INO80Q9ULG1 1556 aaPredicted RBP16.89■□□□□ 0.3
CHD3-216ENST00000573936 STRCQ7RTU9 1775 aa16.89■□□□□ 0.3
CHD3-216ENST00000573936 SETD1BQ9UPS6 1966 aaKnown RBP16.88■□□□□ 0.29
CHD3-216ENST00000573936 ABCC5O15440 1437 aa16.87■□□□□ 0.29
CHD3-216ENST00000573936 MAST1Q9Y2H9 1570 aa16.86■□□□□ 0.29
CHD3-216ENST00000573936 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.86■□□□□ 0.29
CHD3-216ENST00000573936 DAPK1P53355 1430 aa16.86■□□□□ 0.29
CHD3-216ENST00000573936 CNTLNQ9NXG0 1405 aa16.86■□□□□ 0.29
CHD3-216ENST00000573936 A2MP01023 1474 aa16.86■□□□□ 0.29
CHD3-216ENST00000573936 PLXNC1O60486 1568 aa16.85■□□□□ 0.29
CHD3-216ENST00000573936 MROH2AA6NES4 1674 aa16.85■□□□□ 0.29
CHD3-216ENST00000573936 DHX29Q7Z478 1369 aaKnown RBP16.84■□□□□ 0.29
CHD3-216ENST00000573936 SHANK2Q9UPX8 1470 aa16.84■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms