RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 SAMD9Q5K651 1589 aa13.29□□□□□ -0.28
VPS53-214ENST00000572607 CHRDL2Q6WN34 429 aa13.27□□□□□ -0.29
VPS53-214ENST00000572607 EFCAB5A4FU69 1503 aa13.26□□□□□ -0.29
VPS53-214ENST00000572607 ATXN8OSP0DMR3 200 aa13.25□□□□□ -0.29
VPS53-214ENST00000572607 FHOD3Q2V2M9 1422 aa13.24□□□□□ -0.29
VPS53-214ENST00000572607 CD109Q6YHK3 1445 aa13.24□□□□□ -0.29
VPS53-214ENST00000572607 AKT1S1Q96B36 256 aa13.24□□□□□ -0.29
VPS53-214ENST00000572607 ADAMTSL3P82987 1691 aa13.23□□□□□ -0.29
VPS53-214ENST00000572607 ARID3CA6NKF2 412 aa13.22□□□□□ -0.29
VPS53-214ENST00000572607 ARAP3Q8WWN8 1544 aa13.22□□□□□ -0.29
VPS53-214ENST00000572607 RAPGEF6Q8TEU7 1601 aa13.2□□□□□ -0.3
VPS53-214ENST00000572607 KCNH8Q96L42 1107 aa13.19□□□□□ -0.3
VPS53-214ENST00000572607 FRMPD1Q5SYB0 1578 aa13.19□□□□□ -0.3
VPS53-214ENST00000572607 ABCA9Q8IUA7 1624 aa13.18□□□□□ -0.3
VPS53-214ENST00000572607 ATP10BO94823 1461 aa13.17□□□□□ -0.3
VPS53-214ENST00000572607 BCORL1Q5H9F3 1711 aa13.16□□□□□ -0.3
VPS53-214ENST00000572607 FMN1Q68DA7 1419 aa13.15□□□□□ -0.3
VPS53-214ENST00000572607 PTPRMP28827 1452 aa13.15□□□□□ -0.3
VPS53-214ENST00000572607 NUP153P49790 1475 aaKnown RBP13.15□□□□□ -0.3
VPS53-214ENST00000572607 ARHGAP35Q9NRY4 1499 aa13.14□□□□□ -0.31
VPS53-214ENST00000572607 MADDQ8WXG6 1647 aa13.13□□□□□ -0.31
VPS53-214ENST00000572607 ATP1B4Q9UN42 357 aaPredicted RBP13.13□□□□□ -0.31
VPS53-214ENST00000572607 PLEKHD1A6NEE1 506 aa13.12□□□□□ -0.31
VPS53-214ENST00000572607 SIGLEC1Q9BZZ2 1709 aa13.11□□□□□ -0.31
VPS53-214ENST00000572607 FBXO41Q8TF61 875 aa13.11□□□□□ -0.31
VPS53-214ENST00000572607 REM2Q8IYK8 340 aaPredicted RBP13.1□□□□□ -0.31
VPS53-214ENST00000572607 LMTK3Q96Q04 1460 aa13.1□□□□□ -0.31
VPS53-214ENST00000572607 PCF11O94913 1555 aaKnown RBP13.09□□□□□ -0.31
VPS53-214ENST00000572607 RICTORQ6R327 1708 aa13.09□□□□□ -0.31
VPS53-214ENST00000572607 HECW1Q76N89 1606 aa13.09□□□□□ -0.31
VPS53-214ENST00000572607 NEO1Q92859 1461 aa13.08□□□□□ -0.32
VPS53-214ENST00000572607 RAPGEF3O95398 923 aa13.07□□□□□ -0.32
VPS53-214ENST00000572607 CDK11AQ9UQ88 783 aaPredicted RBP13.07□□□□□ -0.32
VPS53-214ENST00000572607 CLIP1P30622 1438 aa13.06□□□□□ -0.32
VPS53-214ENST00000572607 RIMS1Q86UR5 1692 aaKnown RBP13.06□□□□□ -0.32
VPS53-214ENST00000572607 ARHGEF40Q8TER5 1519 aa13.06□□□□□ -0.32
VPS53-214ENST00000572607 PHLDB1Q86UU1 1377 aa13.06□□□□□ -0.32
VPS53-214ENST00000572607 CDK13Q14004 1512 aaKnown RBP13.04□□□□□ -0.32
VPS53-214ENST00000572607 CASKIN1Q8WXD9 1431 aa13.01□□□□□ -0.33
VPS53-214ENST00000572607 ZMYM4Q5VZL5 1548 aa12.99□□□□□ -0.33
VPS53-214ENST00000572607 CCDC18Q5T9S5 1454 aa12.99□□□□□ -0.33
VPS53-214ENST00000572607 TTC37Q6PGP7 1564 aa12.98□□□□□ -0.33
VPS53-214ENST00000572607 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.98□□□□□ -0.33
VPS53-214ENST00000572607 FYCO1Q9BQS8 1478 aa12.97□□□□□ -0.33
VPS53-214ENST00000572607 TROQ12816 1431 aaPredicted RBP12.96□□□□□ -0.33
VPS53-214ENST00000572607 DENND4BO75064 1496 aaPredicted RBP12.96□□□□□ -0.34
VPS53-214ENST00000572607 CEP162Q5TB80 1403 aa12.96□□□□□ -0.34
VPS53-214ENST00000572607 YEATS2Q9ULM3 1422 aa12.96□□□□□ -0.34
VPS53-214ENST00000572607 CFAP74Q9C0B2 1584 aa12.95□□□□□ -0.34
VPS53-214ENST00000572607 FANCAO15360 1455 aa12.95□□□□□ -0.34
VPS53-214ENST00000572607 AKNAQ7Z591 1439 aa12.95□□□□□ -0.34
VPS53-214ENST00000572607 KIF14Q15058 1648 aa12.95□□□□□ -0.34
VPS53-214ENST00000572607 FER1L4A9Z1Z3 1794 aa12.94□□□□□ -0.34
VPS53-214ENST00000572607 PIP4P2Q8N4L2 257 aa12.94□□□□□ -0.34
VPS53-214ENST00000572607 SPDYE2BA6NHP3 402 aa12.93□□□□□ -0.34
VPS53-214ENST00000572607 PITPNM1O00562 1244 aa12.93□□□□□ -0.34
VPS53-214ENST00000572607 SPDYE6P0CI01 402 aa12.93□□□□□ -0.34
VPS53-214ENST00000572607 HSPA2P54652 639 aa12.93□□□□□ -0.34
VPS53-214ENST00000572607 SPDYE2Q495Y8 402 aa12.93□□□□□ -0.34
VPS53-214ENST00000572607 PLCH2O75038 1416 aa12.93□□□□□ -0.34
VPS53-214ENST00000572607 ZFYVE16Q7Z3T8 1539 aa12.93□□□□□ -0.34
VPS53-214ENST00000572607 EFCAB2Q5VUJ9 269 aa12.91□□□□□ -0.34
VPS53-214ENST00000572607 STRCQ7RTU9 1775 aa12.91□□□□□ -0.34
VPS53-214ENST00000572607 ARID4BQ4LE39 1312 aaPredicted RBP12.9□□□□□ -0.34
VPS53-214ENST00000572607 ARHGEF12Q9NZN5 1544 aa12.9□□□□□ -0.34
VPS53-214ENST00000572607 LOC105371045A0A1W2PR82 267 aa12.9□□□□□ -0.34
VPS53-214ENST00000572607 ARHGAP5Q13017 1502 aa12.88□□□□□ -0.35
VPS53-214ENST00000572607 LRRIQ1Q96JM4 1722 aa12.88□□□□□ -0.35
VPS53-214ENST00000572607 FXR2P51116 673 aaKnown RBP eCLIP12.88□□□□□ -0.35
VPS53-214ENST00000572607 MAGI2Q86UL8 1455 aa12.88□□□□□ -0.35
VPS53-214ENST00000572607 PREX1Q8TCU6 1659 aa12.88□□□□□ -0.35
VPS53-214ENST00000572607 MYO5CQ9NQX4 1742 aa12.88□□□□□ -0.35
VPS53-214ENST00000572607 POGZQ7Z3K3 1410 aa12.87□□□□□ -0.35
VPS53-214ENST00000572607 SCAPERQ9BY12 1400 aa12.87□□□□□ -0.35
VPS53-214ENST00000572607 MTUS2Q5JR59 1369 aa12.86□□□□□ -0.35
VPS53-214ENST00000572607 MKRN4PQ13434 485 aaPredicted RBP12.86□□□□□ -0.35
VPS53-214ENST00000572607 CERKQ8TCT0 537 aa12.85□□□□□ -0.35
VPS53-214ENST00000572607 VPS8Q8N3P4 1428 aa12.82□□□□□ -0.36
VPS53-214ENST00000572607 MYT1LQ9UL68 1186 aa12.82□□□□□ -0.36
VPS53-214ENST00000572607 ATP10AO60312 1499 aa12.82□□□□□ -0.36
VPS53-214ENST00000572607 CCNB3Q8WWL7 1395 aa12.81□□□□□ -0.36
VPS53-214ENST00000572607 KDM5CP41229 1560 aa12.81□□□□□ -0.36
VPS53-214ENST00000572607 PREX2Q70Z35 1606 aa12.81□□□□□ -0.36
VPS53-214ENST00000572607 SP7Q8TDD2 431 aaPredicted RBP12.81□□□□□ -0.36
VPS53-214ENST00000572607 EHBP1L1Q8N3D4 1523 aa12.81□□□□□ -0.36
VPS53-214ENST00000572607 C9orf84Q5VXU9 1444 aa12.8□□□□□ -0.36
VPS53-214ENST00000572607 ZNF518AQ6AHZ1 1483 aa12.8□□□□□ -0.36
VPS53-214ENST00000572607 MLECQ14165 292 aa12.8□□□□□ -0.36
VPS53-214ENST00000572607 ILDR2Q71H61 639 aa12.8□□□□□ -0.36
VPS53-214ENST00000572607 ZNF777Q9ULD5 760 aaPredicted RBP12.8□□□□□ -0.36
VPS53-214ENST00000572607 DIP2CQ9Y2E4 1556 aa12.8□□□□□ -0.36
VPS53-214ENST00000572607 C3P01024 1663 aa12.8□□□□□ -0.36
VPS53-214ENST00000572607 SETD1BQ9UPS6 1966 aaKnown RBP12.79□□□□□ -0.36
VPS53-214ENST00000572607 GPATCH8Q9UKJ3 1502 aaKnown RBP12.78□□□□□ -0.36
VPS53-214ENST00000572607 ABCA6Q8N139 1617 aa12.78□□□□□ -0.36
VPS53-214ENST00000572607 CEBPAP49715 358 aaPredicted RBP12.78□□□□□ -0.36
VPS53-214ENST00000572607 CFDP1Q9UEE9 299 aaPredicted RBP12.78□□□□□ -0.36
VPS53-214ENST00000572607 CDC42BPBQ9Y5S2 1711 aa12.78□□□□□ -0.36
VPS53-214ENST00000572607 REREQ9P2R6 1566 aa12.77□□□□□ -0.36
VPS53-214ENST00000572607 AFAP1Q8N556 730 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 241.4 ms