RNA–Protein interactions for RNA: ENST00000572253.5

CCDC40-207, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 3,962 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-207ENST00000572253 DENND4BO75064 1496 aaPredicted RBP14.71□□□□□ -0.05
CCDC40-207ENST00000572253 ZBED9Q6R2W3 1325 aa14.71□□□□□ -0.05
CCDC40-207ENST00000572253 SLC4A1APQ9BWU0 796 aaKnown RBP14.71□□□□□ -0.05
CCDC40-207ENST00000572253 CDK13Q14004 1512 aaKnown RBP14.7□□□□□ -0.06
CCDC40-207ENST00000572253 ANKRD30BQ9BXX2 1392 aa14.7□□□□□ -0.06
CCDC40-207ENST00000572253 RPRD2Q5VT52 1461 aaKnown RBP14.69□□□□□ -0.06
CCDC40-207ENST00000572253 KDM6BO15054 1643 aa14.68□□□□□ -0.06
CCDC40-207ENST00000572253 DAPK1P53355 1430 aa14.68□□□□□ -0.06
CCDC40-207ENST00000572253 CCDC184Q52MB2 194 aa14.68□□□□□ -0.06
CCDC40-207ENST00000572253 WDR62O43379 1518 aa14.68□□□□□ -0.06
CCDC40-207ENST00000572253 C11orf95C9JLR9 678 aaPredicted RBP14.66□□□□□ -0.06
CCDC40-207ENST00000572253 TARBP1Q13395 1621 aaKnown RBP14.66□□□□□ -0.06
CCDC40-207ENST00000572253 NBPF8Q3BBV2 869 aa14.66□□□□□ -0.06
CCDC40-207ENST00000572253 KIF7Q2M1P5 1343 aa14.66□□□□□ -0.06
CCDC40-207ENST00000572253 MSH5O43196 834 aa14.65□□□□□ -0.06
CCDC40-207ENST00000572253 ABCC5O15440 1437 aa14.64□□□□□ -0.07
CCDC40-207ENST00000572253 ADAMTS12P58397 1594 aa14.64□□□□□ -0.07
CCDC40-207ENST00000572253 PBRM1Q86U86 1689 aa14.63□□□□□ -0.07
CCDC40-207ENST00000572253 TEX14Q8IWB6 1497 aa14.63□□□□□ -0.07
CCDC40-207ENST00000572253 BCL11AQ9H165 835 aa14.63□□□□□ -0.07
CCDC40-207ENST00000572253 DNMT1P26358 1616 aaKnown RBP14.62□□□□□ -0.07
CCDC40-207ENST00000572253 B4GALNT3Q6L9W6 998 aa14.62□□□□□ -0.07
CCDC40-207ENST00000572253 POLR3GLQ9BT43 218 aa14.62□□□□□ -0.07
CCDC40-207ENST00000572253 MYT1LQ9UL68 1186 aa14.61□□□□□ -0.07
CCDC40-207ENST00000572253 SPATA31E1Q6ZUB1 1445 aa14.6□□□□□ -0.07
CCDC40-207ENST00000572253 CFDP1Q9UEE9 299 aaPredicted RBP14.59□□□□□ -0.07
CCDC40-207ENST00000572253 ZNF644Q9H582 1327 aaPredicted RBP14.59□□□□□ -0.07
CCDC40-207ENST00000572253 ZNF326Q5BKZ1 582 aaKnown RBP14.59□□□□□ -0.07
CCDC40-207ENST00000572253 ARID4BQ4LE39 1312 aaPredicted RBP14.57□□□□□ -0.08
CCDC40-207ENST00000572253 KIAA0586Q9BVV6 1533 aa14.57□□□□□ -0.08
CCDC40-207ENST00000572253 SMG6Q86US8 1419 aaKnown RBP14.56□□□□□ -0.08
CCDC40-207ENST00000572253 CNGB1Q14028 1251 aaPredicted RBP14.56□□□□□ -0.08
CCDC40-207ENST00000572253 USP47Q96K76 1375 aa14.56□□□□□ -0.08
CCDC40-207ENST00000572253 NUDCQ9Y266 331 aa14.56□□□□□ -0.08
CCDC40-207ENST00000572253 MRC2Q9UBG0 1479 aa14.55□□□□□ -0.08
CCDC40-207ENST00000572253 KIAA1107Q9UPP5 1409 aa14.55□□□□□ -0.08
CCDC40-207ENST00000572253 ZNF777Q9ULD5 760 aaPredicted RBP14.55□□□□□ -0.08
CCDC40-207ENST00000572253 POLR1AO95602 1720 aaPredicted RBP14.54□□□□□ -0.08
CCDC40-207ENST00000572253 ROCK2O75116 1388 aaKnown RBP14.54□□□□□ -0.08
CCDC40-207ENST00000572253 NUP153P49790 1475 aaKnown RBP14.54□□□□□ -0.08
CCDC40-207ENST00000572253 KIAA0556O60303 1618 aa14.54□□□□□ -0.08
CCDC40-207ENST00000572253 ANKRD30AQ9BXX3 1397 aa14.54□□□□□ -0.08
CCDC40-207ENST00000572253 TROQ12816 1431 aaPredicted RBP14.54□□□□□ -0.08
CCDC40-207ENST00000572253 RAPGEF6Q8TEU7 1601 aa14.53□□□□□ -0.08
CCDC40-207ENST00000572253 PKD2Q13563 968 aa14.53□□□□□ -0.08
CCDC40-207ENST00000572253 CCDC136Q96JN2 1154 aa14.53□□□□□ -0.08
CCDC40-207ENST00000572253 PZPP20742 1482 aa14.53□□□□□ -0.08
CCDC40-207ENST00000572253 TMC1Q8TDI8 760 aa14.52□□□□□ -0.08
CCDC40-207ENST00000572253 CAMSAP2Q08AD1 1489 aa14.52□□□□□ -0.08
CCDC40-207ENST00000572253 IFT140Q96RY7 1462 aa14.52□□□□□ -0.09
CCDC40-207ENST00000572253 DHX29Q7Z478 1369 aaKnown RBP14.51□□□□□ -0.09
CCDC40-207ENST00000572253 DISP1Q96F81 1524 aa14.51□□□□□ -0.09
CCDC40-207ENST00000572253 ITSN2Q9NZM3 1697 aa14.49□□□□□ -0.09
CCDC40-207ENST00000572253 PRG4Q92954 1404 aaPredicted RBP14.49□□□□□ -0.09
CCDC40-207ENST00000572253 CARD11Q9BXL7 1154 aa14.49□□□□□ -0.09
CCDC40-207ENST00000572253 MBD5Q9P267 1494 aa14.48□□□□□ -0.09
CCDC40-207ENST00000572253 DNAJC5BQ9UF47 199 aa14.48□□□□□ -0.09
CCDC40-207ENST00000572253 ADGRL2O95490 1459 aa14.48□□□□□ -0.09
CCDC40-207ENST00000572253 ADGBQ8N7X0 1667 aa14.48□□□□□ -0.09
CCDC40-207ENST00000572253 ANP32AP39687 249 aaKnown RBP14.48□□□□□ -0.09
CCDC40-207ENST00000572253 NOP58Q9Y2X3 529 aaKnown RBP14.48□□□□□ -0.09
CCDC40-207ENST00000572253 KIF14Q15058 1648 aa14.47□□□□□ -0.09
CCDC40-207ENST00000572253 ANKRD50Q9ULJ7 1429 aa14.47□□□□□ -0.09
CCDC40-207ENST00000572253 KIF15Q9NS87 1388 aa14.47□□□□□ -0.09
CCDC40-207ENST00000572253 GPATCH8Q9UKJ3 1502 aaKnown RBP14.46□□□□□ -0.09
CCDC40-207ENST00000572253 GRIN2AQ12879 1464 aa14.46□□□□□ -0.1
CCDC40-207ENST00000572253 RNF123Q5XPI4 1314 aa14.45□□□□□ -0.1
CCDC40-207ENST00000572253 NUP155O75694 1391 aa14.45□□□□□ -0.1
CCDC40-207ENST00000572253 ZNF608Q9ULD9 1512 aaPredicted RBP14.44□□□□□ -0.1
CCDC40-207ENST00000572253 PNISRQ8TF01 805 aaKnown RBP14.44□□□□□ -0.1
CCDC40-207ENST00000572253 TSPY4P0CV99 314 aa14.44□□□□□ -0.1
CCDC40-207ENST00000572253 TSPY10P0CW01 314 aa14.44□□□□□ -0.1
CCDC40-207ENST00000572253 KTN1Q86UP2 1357 aaKnown RBP14.44□□□□□ -0.1
CCDC40-207ENST00000572253 CARMIL2Q6F5E8 1435 aa14.44□□□□□ -0.1
CCDC40-207ENST00000572253 RALBP1Q15311 655 aa14.44□□□□□ -0.1
CCDC40-207ENST00000572253 RALGAPBQ86X10 1494 aa14.44□□□□□ -0.1
CCDC40-207ENST00000572253 PLEKHD1A6NEE1 506 aa14.43□□□□□ -0.1
CCDC40-207ENST00000572253 CHMP7Q8WUX9 453 aaPredicted RBP14.43□□□□□ -0.1
CCDC40-207ENST00000572253 UHRF1BP1Q6BDS2 1440 aa14.43□□□□□ -0.1
CCDC40-207ENST00000572253 KDM5CP41229 1560 aa14.42□□□□□ -0.1
CCDC40-207ENST00000572253 MYBBP1AQ9BQG0 1328 aaKnown RBP14.42□□□□□ -0.1
CCDC40-207ENST00000572253 BRD4O60885 1362 aaPredicted RBP14.42□□□□□ -0.1
CCDC40-207ENST00000572253 KDM2AQ9Y2K7 1162 aa14.41□□□□□ -0.1
CCDC40-207ENST00000572253 BCORL1Q5H9F3 1711 aa14.41□□□□□ -0.1
CCDC40-207ENST00000572253 ARHGEF12Q9NZN5 1544 aa14.41□□□□□ -0.1
CCDC40-207ENST00000572253 PLB1Q6P1J6 1458 aa14.4□□□□□ -0.1
CCDC40-207ENST00000572253 C9orf84Q5VXU9 1444 aa14.39□□□□□ -0.11
CCDC40-207ENST00000572253 ST20-MTHFSA0A0A6YYL1 179 aa14.39□□□□□ -0.11
CCDC40-207ENST00000572253 CROCC2H7BZ55 1655 aa14.39□□□□□ -0.11
CCDC40-207ENST00000572253 ADCY10Q96PN6 1610 aa14.38□□□□□ -0.11
CCDC40-207ENST00000572253 FBLN2P98095 1184 aa14.38□□□□□ -0.11
CCDC40-207ENST00000572253 DCAF11Q8TEB1 546 aa14.38□□□□□ -0.11
CCDC40-207ENST00000572253 SHANK2Q9UPX8 1470 aa14.38□□□□□ -0.11
CCDC40-207ENST00000572253 ZBTB47Q9UFB7 747 aaPredicted RBP14.38□□□□□ -0.11
CCDC40-207ENST00000572253 IPO9Q96P70 1041 aaKnown RBP14.37□□□□□ -0.11
CCDC40-207ENST00000572253 DEKP35659 375 aaKnown RBP14.37□□□□□ -0.11
CCDC40-207ENST00000572253 RTL5Q5HYW3 569 aaPredicted RBP14.37□□□□□ -0.11
CCDC40-207ENST00000572253 MAGI1Q96QZ7 1491 aaPredicted RBP14.36□□□□□ -0.11
CCDC40-207ENST00000572253 SENP3-EIF4A1A0A087X0R7 540 aa14.36□□□□□ -0.11
CCDC40-207ENST00000572253 LRPPRCP42704 1394 aaKnown RBP14.35□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms