RNA–Protein interactions for RNA: ENST00000568239.1

SMG1-215, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 1 (best)

Gene SMG1, Length 2,978 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-215ENST00000568239 NEUROD1Q13562 356 aa10.33□□□□□ -0.76
SMG1-215ENST00000568239 ABCC10Q5T3U5 1492 aa10.32□□□□□ -0.76
SMG1-215ENST00000568239 CDC42BPAQ5VT25 1732 aa10.32□□□□□ -0.76
SMG1-215ENST00000568239 ABCC5O15440 1437 aa10.32□□□□□ -0.76
SMG1-215ENST00000568239 ZCCHC11Q5TAX3 1644 aaKnown RBP10.31□□□□□ -0.76
SMG1-215ENST00000568239 SLC24A1O60721 1099 aa10.31□□□□□ -0.76
SMG1-215ENST00000568239 HNRNPMP52272 730 aaKnown RBP eCLIP10.31□□□□□ -0.76
SMG1-215ENST00000568239 DNMT1P26358 1616 aaKnown RBP10.31□□□□□ -0.76
SMG1-215ENST00000568239 SIN3AQ96ST3 1273 aa10.3□□□□□ -0.76
SMG1-215ENST00000568239 UHRF1BP1LA0JNW5 1464 aa10.3□□□□□ -0.76
SMG1-215ENST00000568239 KDM5BQ9UGL1 1544 aa10.3□□□□□ -0.76
SMG1-215ENST00000568239 NPM1P06748 294 aaKnown RBP eCLIP10.29□□□□□ -0.76
SMG1-215ENST00000568239 TSPY4P0CV99 314 aa10.29□□□□□ -0.76
SMG1-215ENST00000568239 TSPY10P0CW01 314 aa10.29□□□□□ -0.76
SMG1-215ENST00000568239 MAPKBP1O60336 1514 aa10.29□□□□□ -0.76
SMG1-215ENST00000568239 ARHGAP5Q13017 1502 aa10.28□□□□□ -0.76
SMG1-215ENST00000568239 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP10.28□□□□□ -0.76
SMG1-215ENST00000568239 TTC37Q6PGP7 1564 aa10.28□□□□□ -0.76
SMG1-215ENST00000568239 GCC2Q8IWJ2 1684 aa10.27□□□□□ -0.77
SMG1-215ENST00000568239 AKNAQ7Z591 1439 aa10.27□□□□□ -0.77
SMG1-215ENST00000568239 ROCK1Q13464 1354 aa10.26□□□□□ -0.77
SMG1-215ENST00000568239 CDC42BPBQ9Y5S2 1711 aa10.26□□□□□ -0.77
SMG1-215ENST00000568239 KDM6BO15054 1643 aa10.26□□□□□ -0.77
SMG1-215ENST00000568239 ANKRD30AQ9BXX3 1397 aa10.25□□□□□ -0.77
SMG1-215ENST00000568239 PREX2Q70Z35 1606 aa10.25□□□□□ -0.77
SMG1-215ENST00000568239 NCOA1Q15788 1441 aa10.25□□□□□ -0.77
SMG1-215ENST00000568239 MYO5CQ9NQX4 1742 aa10.24□□□□□ -0.77
SMG1-215ENST00000568239 EFCAB2Q5VUJ9 269 aa10.24□□□□□ -0.77
SMG1-215ENST00000568239 CYB5RLQ6IPT4 315 aa10.24□□□□□ -0.77
SMG1-215ENST00000568239 SAMD9LQ8IVG5 1584 aa10.23□□□□□ -0.77
SMG1-215ENST00000568239 C9orf84Q5VXU9 1444 aa10.23□□□□□ -0.77
SMG1-215ENST00000568239 ZNF316A6NFI3 1004 aaPredicted RBP10.23□□□□□ -0.77
SMG1-215ENST00000568239 MPHOSPH9Q99550 1183 aa10.23□□□□□ -0.77
SMG1-215ENST00000568239 WDR7Q9Y4E6 1490 aa10.23□□□□□ -0.77
SMG1-215ENST00000568239 FOXD1Q16676 465 aa10.23□□□□□ -0.77
SMG1-215ENST00000568239 ASXL2Q76L83 1435 aa10.22□□□□□ -0.77
SMG1-215ENST00000568239 SLC4A1APQ9BWU0 796 aaKnown RBP10.22□□□□□ -0.77
SMG1-215ENST00000568239 SYCP2Q9BX26 1530 aa10.22□□□□□ -0.77
SMG1-215ENST00000568239 CROCC2H7BZ55 1655 aa10.22□□□□□ -0.77
SMG1-215ENST00000568239 ADGBQ8N7X0 1667 aa10.22□□□□□ -0.77
SMG1-215ENST00000568239 RSPH4AQ5TD94 716 aa10.22□□□□□ -0.77
SMG1-215ENST00000568239 PLCH2O75038 1416 aa10.22□□□□□ -0.77
SMG1-215ENST00000568239 MBD5Q9P267 1494 aa10.21□□□□□ -0.77
SMG1-215ENST00000568239 CCDC141Q6ZP82 1450 aa10.21□□□□□ -0.78
SMG1-215ENST00000568239 ANKRD50Q9ULJ7 1429 aa10.2□□□□□ -0.78
SMG1-215ENST00000568239 TONSLQ96HA7 1378 aa10.2□□□□□ -0.78
SMG1-215ENST00000568239 KIF15Q9NS87 1388 aa10.2□□□□□ -0.78
SMG1-215ENST00000568239 MYT1LQ9UL68 1186 aa10.2□□□□□ -0.78
SMG1-215ENST00000568239 ADGRL2O95490 1459 aa10.2□□□□□ -0.78
SMG1-215ENST00000568239 SHANK2Q9UPX8 1470 aa10.19□□□□□ -0.78
SMG1-215ENST00000568239 DIEXFQ68CQ4 756 aaKnown RBP10.19□□□□□ -0.78
SMG1-215ENST00000568239 ARHGEF5Q12774 1597 aa10.19□□□□□ -0.78
SMG1-215ENST00000568239 PLEKHH2Q8IVE3 1493 aa10.18□□□□□ -0.78
SMG1-215ENST00000568239 ACIN1Q9UKV3 1341 aaKnown RBP10.17□□□□□ -0.78
SMG1-215ENST00000568239 AFAP1Q8N556 730 aa10.17□□□□□ -0.78
SMG1-215ENST00000568239 KIAA1107Q9UPP5 1409 aa10.17□□□□□ -0.78
SMG1-215ENST00000568239 ARHGEF12Q9NZN5 1544 aa10.17□□□□□ -0.78
SMG1-215ENST00000568239 NUP155O75694 1391 aa10.16□□□□□ -0.78
SMG1-215ENST00000568239 TIMELESSQ9UNS1 1208 aa10.16□□□□□ -0.78
SMG1-215ENST00000568239 FANCAO15360 1455 aa10.15□□□□□ -0.78
SMG1-215ENST00000568239 DENND4BO75064 1496 aaPredicted RBP10.15□□□□□ -0.78
SMG1-215ENST00000568239 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.15□□□□□ -0.78
SMG1-215ENST00000568239 TRAPPC8Q9Y2L5 1435 aa10.15□□□□□ -0.79
SMG1-215ENST00000568239 PKD2Q13563 968 aa10.14□□□□□ -0.79
SMG1-215ENST00000568239 SPAG9O60271 1321 aaKnown RBP10.14□□□□□ -0.79
SMG1-215ENST00000568239 PPP1R15AO75807 674 aaPredicted RBP10.14□□□□□ -0.79
SMG1-215ENST00000568239 ABCA9Q8IUA7 1624 aa10.14□□□□□ -0.79
SMG1-215ENST00000568239 RIMBP3CA6NJZ7 1639 aa10.14□□□□□ -0.79
SMG1-215ENST00000568239 RIMBP3BA6NNM3 1639 aa10.14□□□□□ -0.79
SMG1-215ENST00000568239 RIMBP3Q9UFD9 1639 aa10.14□□□□□ -0.79
SMG1-215ENST00000568239 ABCC1P33527 1531 aa10.13□□□□□ -0.79
SMG1-215ENST00000568239 CD109Q6YHK3 1445 aa10.12□□□□□ -0.79
SMG1-215ENST00000568239 ADGRL1O94910 1474 aa10.12□□□□□ -0.79
SMG1-215ENST00000568239 PZPP20742 1482 aa10.12□□□□□ -0.79
SMG1-215ENST00000568239 SCAPERQ9BY12 1400 aa10.12□□□□□ -0.79
SMG1-215ENST00000568239 ANKRD30BQ9BXX2 1392 aa10.11□□□□□ -0.79
SMG1-215ENST00000568239 ARAP3Q8WWN8 1544 aa10.11□□□□□ -0.79
SMG1-215ENST00000568239 HIRIP3Q9BW71 556 aaPredicted RBP10.1□□□□□ -0.79
SMG1-215ENST00000568239 MAST1Q9Y2H9 1570 aa10.1□□□□□ -0.79
SMG1-215ENST00000568239 L3MBTL2Q969R5 705 aa10.09□□□□□ -0.79
SMG1-215ENST00000568239 DUOX2Q9NRD8 1548 aa10.07□□□□□ -0.8
SMG1-215ENST00000568239 PLXNC1O60486 1568 aa10.07□□□□□ -0.8
SMG1-215ENST00000568239 FAM69CQ0P6D2 419 aa10.07□□□□□ -0.8
SMG1-215ENST00000568239 RPRD2Q5VT52 1461 aaKnown RBP10.06□□□□□ -0.8
SMG1-215ENST00000568239 ZNF326Q5BKZ1 582 aaKnown RBP10.05□□□□□ -0.8
SMG1-215ENST00000568239 FAM135AQ9P2D6 1515 aa10.05□□□□□ -0.8
SMG1-215ENST00000568239 RTEL1-TNFRSF6BF6WH68 1400 aa10.05□□□□□ -0.8
SMG1-215ENST00000568239 PLPPR3Q6T4P5 718 aa10.05□□□□□ -0.8
SMG1-215ENST00000568239 ZFYVE16Q7Z3T8 1539 aa10.05□□□□□ -0.8
SMG1-215ENST00000568239 ERBINQ96RT1 1412 aa10.05□□□□□ -0.8
SMG1-215ENST00000568239 KIF3BO15066 747 aa10.05□□□□□ -0.8
SMG1-215ENST00000568239 RAPGEF3O95398 923 aa10.05□□□□□ -0.8
SMG1-215ENST00000568239 ATP7AQ04656 1500 aa10.04□□□□□ -0.8
SMG1-215ENST00000568239 KDM5DQ9BY66 1539 aa10.03□□□□□ -0.8
SMG1-215ENST00000568239 ZNF518AQ6AHZ1 1483 aa10.03□□□□□ -0.8
SMG1-215ENST00000568239 CFAP74Q9C0B2 1584 aa10.02□□□□□ -0.81
SMG1-215ENST00000568239 KDM2AQ9Y2K7 1162 aa10.02□□□□□ -0.81
SMG1-215ENST00000568239 UNC13BO14795 1591 aa10.01□□□□□ -0.81
SMG1-215ENST00000568239 MIER1Q8N108 512 aa10.01□□□□□ -0.81
SMG1-215ENST00000568239 INO80Q9ULG1 1556 aaPredicted RBP10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms