RNA–Protein interactions for RNA: ENST00000566083.6

CLN3-222, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,409 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-222ENST00000566083 CCDC18Q5T9S5 1454 aa24.23■■□□□ 1.47
CLN3-222ENST00000566083 MYO5CQ9NQX4 1742 aa24.22■■□□□ 1.47
CLN3-222ENST00000566083 ILDR1Q86SU0 546 aaPredicted RBP24.21■■□□□ 1.47
CLN3-222ENST00000566083 BCORL1Q5H9F3 1711 aa24.21■■□□□ 1.47
CLN3-222ENST00000566083 ZFYVE16Q7Z3T8 1539 aa24.2■■□□□ 1.46
CLN3-222ENST00000566083 ARHGAP5Q13017 1502 aa24.15■■□□□ 1.46
CLN3-222ENST00000566083 YEATS2Q9ULM3 1422 aa24.14■■□□□ 1.46
CLN3-222ENST00000566083 ZNF518AQ6AHZ1 1483 aa24.14■■□□□ 1.45
CLN3-222ENST00000566083 FYCO1Q9BQS8 1478 aa24.14■■□□□ 1.45
CLN3-222ENST00000566083 MADDQ8WXG6 1647 aa24.12■■□□□ 1.45
CLN3-222ENST00000566083 PCF11O94913 1555 aaKnown RBP24.12■■□□□ 1.45
CLN3-222ENST00000566083 ATP10AO60312 1499 aa24.11■■□□□ 1.45
CLN3-222ENST00000566083 LRRIQ1Q96JM4 1722 aa24.1■■□□□ 1.45
CLN3-222ENST00000566083 C9orf84Q5VXU9 1444 aa24.07■■□□□ 1.44
CLN3-222ENST00000566083 AFAP1Q8N556 730 aa24.05■■□□□ 1.44
CLN3-222ENST00000566083 MYT1LQ9UL68 1186 aa24.04■■□□□ 1.44
CLN3-222ENST00000566083 KDM5CP41229 1560 aa24.03■■□□□ 1.44
CLN3-222ENST00000566083 RIMS1Q86UR5 1692 aaKnown RBP24.03■■□□□ 1.44
CLN3-222ENST00000566083 CDC42BPBQ9Y5S2 1711 aa24.02■■□□□ 1.44
CLN3-222ENST00000566083 PREX2Q70Z35 1606 aa24.02■■□□□ 1.44
CLN3-222ENST00000566083 MLECQ14165 292 aa24.01■■□□□ 1.43
CLN3-222ENST00000566083 MLH3Q9UHC1 1453 aa24■■□□□ 1.43
CLN3-222ENST00000566083 LMTK3Q96Q04 1460 aa23.96■■□□□ 1.43
CLN3-222ENST00000566083 ABCC1P33527 1531 aa23.96■■□□□ 1.43
CLN3-222ENST00000566083 SIGLEC1Q9BZZ2 1709 aa23.95■■□□□ 1.43
CLN3-222ENST00000566083 ARHGEF12Q9NZN5 1544 aa23.95■■□□□ 1.42
CLN3-222ENST00000566083 FER1L4A9Z1Z3 1794 aa23.95■■□□□ 1.42
CLN3-222ENST00000566083 REREQ9P2R6 1566 aa23.94■■□□□ 1.42
CLN3-222ENST00000566083 TRAPPC8Q9Y2L5 1435 aa23.93■■□□□ 1.42
CLN3-222ENST00000566083 MTUS2Q5JR59 1369 aa23.93■■□□□ 1.42
CLN3-222ENST00000566083 CDC42BPAQ5VT25 1732 aa23.92■■□□□ 1.42
CLN3-222ENST00000566083 GPATCH8Q9UKJ3 1502 aaKnown RBP23.91■■□□□ 1.42
CLN3-222ENST00000566083 PLPPR3Q6T4P5 718 aa23.91■■□□□ 1.42
CLN3-222ENST00000566083 ZNF777Q9ULD5 760 aaPredicted RBP23.91■■□□□ 1.42
CLN3-222ENST00000566083 CCNB3Q8WWL7 1395 aa23.9■■□□□ 1.42
CLN3-222ENST00000566083 DIP2CQ9Y2E4 1556 aa23.9■■□□□ 1.42
CLN3-222ENST00000566083 ITSN2Q9NZM3 1697 aa23.9■■□□□ 1.42
CLN3-222ENST00000566083 PLEKHH2Q8IVE3 1493 aa23.9■■□□□ 1.42
CLN3-222ENST00000566083 CFDP1Q9UEE9 299 aaPredicted RBP23.9■■□□□ 1.42
CLN3-222ENST00000566083 ESF1Q9H501 851 aaKnown RBP23.88■■□□□ 1.41
CLN3-222ENST00000566083 KIAA1107Q9UPP5 1409 aa23.88■■□□□ 1.41
CLN3-222ENST00000566083 AGLP35573 1532 aa23.88■■□□□ 1.41
CLN3-222ENST00000566083 CEP162Q5TB80 1403 aa23.86■■□□□ 1.41
CLN3-222ENST00000566083 ABCA6Q8N139 1617 aa23.84■■□□□ 1.41
CLN3-222ENST00000566083 SPAG9O60271 1321 aaKnown RBP23.84■■□□□ 1.41
CLN3-222ENST00000566083 SETD1BQ9UPS6 1966 aaKnown RBP23.83■■□□□ 1.41
CLN3-222ENST00000566083 HSPA2P54652 639 aa23.82■■□□□ 1.4
CLN3-222ENST00000566083 SAMD9LQ8IVG5 1584 aa23.82■■□□□ 1.4
CLN3-222ENST00000566083 KIDINS220Q9ULH0 1771 aa23.81■■□□□ 1.4
CLN3-222ENST00000566083 HNRNPMP52272 730 aaKnown RBP eCLIP23.81■■□□□ 1.4
CLN3-222ENST00000566083 EHBP1L1Q8N3D4 1523 aa23.8■■□□□ 1.4
CLN3-222ENST00000566083 SYCP2Q9BX26 1530 aa23.8■■□□□ 1.4
CLN3-222ENST00000566083 CNTLNQ9NXG0 1405 aa23.79■■□□□ 1.4
CLN3-222ENST00000566083 CEBPAP49715 358 aaPredicted RBP23.79■■□□□ 1.4
CLN3-222ENST00000566083 FBXO41Q8TF61 875 aa23.77■■□□□ 1.4
CLN3-222ENST00000566083 PREX1Q8TCU6 1659 aa23.76■■□□□ 1.39
CLN3-222ENST00000566083 UHRF1BP1Q6BDS2 1440 aa23.74■■□□□ 1.39
CLN3-222ENST00000566083 ATP7AQ04656 1500 aa23.73■■□□□ 1.39
CLN3-222ENST00000566083 DMRT2Q9Y5R5 561 aa23.73■■□□□ 1.39
CLN3-222ENST00000566083 RSPH4AQ5TD94 716 aa23.7■■□□□ 1.38
CLN3-222ENST00000566083 TIAM1Q13009 1591 aa23.7■■□□□ 1.38
CLN3-222ENST00000566083 PPP6R1Q9UPN7 881 aa23.69■■□□□ 1.38
CLN3-222ENST00000566083 A2MP01023 1474 aa23.68■■□□□ 1.38
CLN3-222ENST00000566083 INO80Q9ULG1 1556 aaPredicted RBP23.68■■□□□ 1.38
CLN3-222ENST00000566083 RTEL1-TNFRSF6BF6WH68 1400 aa23.66■■□□□ 1.38
CLN3-222ENST00000566083 C3P01024 1663 aa23.66■■□□□ 1.38
CLN3-222ENST00000566083 MBD5Q9P267 1494 aa23.65■■□□□ 1.38
CLN3-222ENST00000566083 ZNF644Q9H582 1327 aaPredicted RBP23.65■■□□□ 1.38
CLN3-222ENST00000566083 SUPT6HQ7KZ85 1726 aaKnown RBP23.65■■□□□ 1.38
CLN3-222ENST00000566083 VPS8Q8N3P4 1428 aa23.65■■□□□ 1.38
CLN3-222ENST00000566083 NPATQ14207 1427 aa23.64■■□□□ 1.37
CLN3-222ENST00000566083 NCOA2Q15596 1464 aa23.64■■□□□ 1.37
CLN3-222ENST00000566083 PLXNC1O60486 1568 aa23.63■■□□□ 1.37
CLN3-222ENST00000566083 LOC105371045A0A1W2PR82 267 aa23.62■■□□□ 1.37
CLN3-222ENST00000566083 ZMYM3Q14202 1370 aa23.62■■□□□ 1.37
CLN3-222ENST00000566083 MROH2AA6NES4 1674 aa23.62■■□□□ 1.37
CLN3-222ENST00000566083 ADGBQ8N7X0 1667 aa23.61■■□□□ 1.37
CLN3-222ENST00000566083 GGT6Q6P531 493 aa23.59■■□□□ 1.37
CLN3-222ENST00000566083 CCDC141Q6ZP82 1450 aa23.58■■□□□ 1.37
CLN3-222ENST00000566083 DHX29Q7Z478 1369 aaKnown RBP23.57■■□□□ 1.36
CLN3-222ENST00000566083 CERKQ8TCT0 537 aa23.57■■□□□ 1.36
CLN3-222ENST00000566083 MAP3K1Q13233 1512 aa23.56■■□□□ 1.36
CLN3-222ENST00000566083 TSPY4P0CV99 314 aa23.56■■□□□ 1.36
CLN3-222ENST00000566083 TSPY10P0CW01 314 aa23.56■■□□□ 1.36
CLN3-222ENST00000566083 CAMSAP2Q08AD1 1489 aa23.55■■□□□ 1.36
CLN3-222ENST00000566083 LRRC9Q6ZRR7 1453 aa23.55■■□□□ 1.36
CLN3-222ENST00000566083 PTPRTO14522 1441 aa23.54■■□□□ 1.36
CLN3-222ENST00000566083 STRCQ7RTU9 1775 aa23.52■■□□□ 1.36
CLN3-222ENST00000566083 ARHGEF5Q12774 1597 aa23.5■■□□□ 1.35
CLN3-222ENST00000566083 CLTCQ00610 1675 aaKnown RBP23.49■■□□□ 1.35
CLN3-222ENST00000566083 FAM135AQ9P2D6 1515 aa23.48■■□□□ 1.35
CLN3-222ENST00000566083 KIF3BO15066 747 aa23.48■■□□□ 1.35
CLN3-222ENST00000566083 APLP2Q06481 763 aa23.48■■□□□ 1.35
CLN3-222ENST00000566083 PTPRKQ15262 1439 aa23.47■■□□□ 1.35
CLN3-222ENST00000566083 NCOA1Q15788 1441 aa23.47■■□□□ 1.35
CLN3-222ENST00000566083 MIA2Q96PC5 1412 aa23.46■■□□□ 1.35
CLN3-222ENST00000566083 KANK4Q5T7N3 995 aaPredicted RBP23.43■■□□□ 1.34
CLN3-222ENST00000566083 PKD2Q13563 968 aa23.42■■□□□ 1.34
CLN3-222ENST00000566083 MYOM3Q5VTT5 1437 aa23.42■■□□□ 1.34
CLN3-222ENST00000566083 WASHC2CQ9Y4E1 1318 aa23.42■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms