RNA–Protein interactions for RNA: ENST00000564899.1

SF3B3-205, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 4

Gene SF3B3, Length 551 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-205ENST00000564899 MAP3K1Q13233 1512 aa17.25■□□□□ 0.35
SF3B3-205ENST00000564899 DENND4BO75064 1496 aaPredicted RBP17.24■□□□□ 0.35
SF3B3-205ENST00000564899 CCDC18Q5T9S5 1454 aa17.24■□□□□ 0.35
SF3B3-205ENST00000564899 TIAM1Q13009 1591 aa17.23■□□□□ 0.35
SF3B3-205ENST00000564899 AKNAQ7Z591 1439 aa17.23■□□□□ 0.35
SF3B3-205ENST00000564899 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.23■□□□□ 0.35
SF3B3-205ENST00000564899 PPARGC1BQ86YN6 1023 aaKnown RBP17.22■□□□□ 0.35
SF3B3-205ENST00000564899 FANCAO15360 1455 aa17.22■□□□□ 0.35
SF3B3-205ENST00000564899 ZMYM4Q5VZL5 1548 aa17.21■□□□□ 0.34
SF3B3-205ENST00000564899 MLECQ14165 292 aa17.19■□□□□ 0.34
SF3B3-205ENST00000564899 CERKQ8TCT0 537 aa17.19■□□□□ 0.34
SF3B3-205ENST00000564899 CDK13Q14004 1512 aaKnown RBP17.19■□□□□ 0.34
SF3B3-205ENST00000564899 ZFYVE16Q7Z3T8 1539 aa17.19■□□□□ 0.34
SF3B3-205ENST00000564899 LRRIQ1Q96JM4 1722 aa17.18■□□□□ 0.34
SF3B3-205ENST00000564899 KANK4Q5T7N3 995 aaPredicted RBP17.17■□□□□ 0.34
SF3B3-205ENST00000564899 ILDR2Q71H61 639 aa17.17■□□□□ 0.34
SF3B3-205ENST00000564899 FER1L4A9Z1Z3 1794 aa17.17■□□□□ 0.34
SF3B3-205ENST00000564899 LRRC9Q6ZRR7 1453 aa17.16■□□□□ 0.34
SF3B3-205ENST00000564899 CFAP74Q9C0B2 1584 aa17.14■□□□□ 0.33
SF3B3-205ENST00000564899 MTUS2Q5JR59 1369 aa17.14■□□□□ 0.33
SF3B3-205ENST00000564899 PLEKHD1A6NEE1 506 aa17.12■□□□□ 0.33
SF3B3-205ENST00000564899 CEBPAP49715 358 aaPredicted RBP17.12■□□□□ 0.33
SF3B3-205ENST00000564899 POGZQ7Z3K3 1410 aa17.12■□□□□ 0.33
SF3B3-205ENST00000564899 EHBP1L1Q8N3D4 1523 aa17.11■□□□□ 0.33
SF3B3-205ENST00000564899 ARHGEF12Q9NZN5 1544 aa17.11■□□□□ 0.33
SF3B3-205ENST00000564899 CDK11AQ9UQ88 783 aaPredicted RBP17.11■□□□□ 0.33
SF3B3-205ENST00000564899 STRCQ7RTU9 1775 aa17.1■□□□□ 0.33
SF3B3-205ENST00000564899 SCAPERQ9BY12 1400 aa17.1■□□□□ 0.33
SF3B3-205ENST00000564899 PREX1Q8TCU6 1659 aa17.07■□□□□ 0.32
SF3B3-205ENST00000564899 MAGI2Q86UL8 1455 aa17.07■□□□□ 0.32
SF3B3-205ENST00000564899 TROQ12816 1431 aaPredicted RBP17.06■□□□□ 0.32
SF3B3-205ENST00000564899 DISP3Q9P2K9 1392 aa17.06■□□□□ 0.32
SF3B3-205ENST00000564899 PLCH2O75038 1416 aa17.05■□□□□ 0.32
SF3B3-205ENST00000564899 ATP10AO60312 1499 aa17.04■□□□□ 0.32
SF3B3-205ENST00000564899 C9orf84Q5VXU9 1444 aa17.04■□□□□ 0.32
SF3B3-205ENST00000564899 KIF14Q15058 1648 aa17.03■□□□□ 0.32
SF3B3-205ENST00000564899 SUPT6HQ7KZ85 1726 aaKnown RBP17.01■□□□□ 0.31
SF3B3-205ENST00000564899 NCOA2Q15596 1464 aa17.01■□□□□ 0.31
SF3B3-205ENST00000564899 TRIM26Q12899 539 aaPredicted RBP16.99■□□□□ 0.31
SF3B3-205ENST00000564899 MYO5CQ9NQX4 1742 aa16.99■□□□□ 0.31
SF3B3-205ENST00000564899 SOCS7O14512 581 aa16.98■□□□□ 0.31
SF3B3-205ENST00000564899 DIP2CQ9Y2E4 1556 aa16.98■□□□□ 0.31
SF3B3-205ENST00000564899 AFAP1Q8N556 730 aa16.97■□□□□ 0.31
SF3B3-205ENST00000564899 KDM5CP41229 1560 aa16.97■□□□□ 0.31
SF3B3-205ENST00000564899 SPATA31D1Q6ZQQ2 1576 aa16.96■□□□□ 0.31
SF3B3-205ENST00000564899 ABCA6Q8N139 1617 aa16.96■□□□□ 0.3
SF3B3-205ENST00000564899 C3P01024 1663 aa16.95■□□□□ 0.3
SF3B3-205ENST00000564899 UHRF1BP1Q6BDS2 1440 aa16.95■□□□□ 0.3
SF3B3-205ENST00000564899 LTBP4Q8N2S1 1624 aa16.94■□□□□ 0.3
SF3B3-205ENST00000564899 ZNF518AQ6AHZ1 1483 aa16.93■□□□□ 0.3
SF3B3-205ENST00000564899 MYOM3Q5VTT5 1437 aa16.93■□□□□ 0.3
SF3B3-205ENST00000564899 CCNB3Q8WWL7 1395 aa16.92■□□□□ 0.3
SF3B3-205ENST00000564899 EFCAB2Q5VUJ9 269 aa16.92■□□□□ 0.3
SF3B3-205ENST00000564899 RRBP1Q9P2E9 1410 aaKnown RBP16.92■□□□□ 0.3
SF3B3-205ENST00000564899 ARHGAP5Q13017 1502 aa16.91■□□□□ 0.3
SF3B3-205ENST00000564899 FGD6Q6ZV73 1430 aa16.89■□□□□ 0.29
SF3B3-205ENST00000564899 CDC42BPBQ9Y5S2 1711 aa16.89■□□□□ 0.29
SF3B3-205ENST00000564899 PTPRTO14522 1441 aa16.88■□□□□ 0.29
SF3B3-205ENST00000564899 TRAPPC8Q9Y2L5 1435 aa16.88■□□□□ 0.29
SF3B3-205ENST00000564899 SETD1BQ9UPS6 1966 aaKnown RBP16.88■□□□□ 0.29
SF3B3-205ENST00000564899 PCGF6Q9BYE7 350 aa16.88■□□□□ 0.29
SF3B3-205ENST00000564899 REREQ9P2R6 1566 aa16.88■□□□□ 0.29
SF3B3-205ENST00000564899 GPATCH8Q9UKJ3 1502 aaKnown RBP16.87■□□□□ 0.29
SF3B3-205ENST00000564899 MIA2Q96PC5 1412 aa16.87■□□□□ 0.29
SF3B3-205ENST00000564899 DMRT2Q9Y5R5 561 aa16.86■□□□□ 0.29
SF3B3-205ENST00000564899 NCOA1Q15788 1441 aa16.86■□□□□ 0.29
SF3B3-205ENST00000564899 ABCC1P33527 1531 aa16.85■□□□□ 0.29
SF3B3-205ENST00000564899 ITSN2Q9NZM3 1697 aa16.85■□□□□ 0.29
SF3B3-205ENST00000564899 MYT1LQ9UL68 1186 aa16.84■□□□□ 0.29
SF3B3-205ENST00000564899 MLH3Q9UHC1 1453 aa16.84■□□□□ 0.29
SF3B3-205ENST00000564899 KIDINS220Q9ULH0 1771 aa16.84■□□□□ 0.29
SF3B3-205ENST00000564899 AGLP35573 1532 aa16.83■□□□□ 0.28
SF3B3-205ENST00000564899 FAM50AQ14320 339 aaKnown RBP16.83■□□□□ 0.28
SF3B3-205ENST00000564899 CFDP1Q9UEE9 299 aaPredicted RBP16.83■□□□□ 0.28
SF3B3-205ENST00000564899 PREX2Q70Z35 1606 aa16.82■□□□□ 0.28
SF3B3-205ENST00000564899 PTPN23Q9H3S7 1636 aa16.81■□□□□ 0.28
SF3B3-205ENST00000564899 TCOF1Q13428 1488 aaKnown RBP16.81■□□□□ 0.28
SF3B3-205ENST00000564899 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.81■□□□□ 0.28
SF3B3-205ENST00000564899 CDC42BPAQ5VT25 1732 aa16.81■□□□□ 0.28
SF3B3-205ENST00000564899 CAMSAP1Q5T5Y3 1602 aa16.81■□□□□ 0.28
SF3B3-205ENST00000564899 ZNF335Q9H4Z2 1342 aaPredicted RBP16.78■□□□□ 0.28
SF3B3-205ENST00000564899 NCKAP5LQ9HCH0 1330 aa16.77■□□□□ 0.28
SF3B3-205ENST00000564899 ZNF777Q9ULD5 760 aaPredicted RBP16.77■□□□□ 0.28
SF3B3-205ENST00000564899 CAMSAP2Q08AD1 1489 aa16.77■□□□□ 0.28
SF3B3-205ENST00000564899 IQSEC2Q5JU85 1478 aa16.76■□□□□ 0.27
SF3B3-205ENST00000564899 ZNF644Q9H582 1327 aaPredicted RBP16.75■□□□□ 0.27
SF3B3-205ENST00000564899 SAMD9LQ8IVG5 1584 aa16.75■□□□□ 0.27
SF3B3-205ENST00000564899 ITGAEP38570 1179 aa16.74■□□□□ 0.27
SF3B3-205ENST00000564899 MROH2AA6NES4 1674 aa16.72■□□□□ 0.27
SF3B3-205ENST00000564899 SYCP2Q9BX26 1530 aa16.72■□□□□ 0.27
SF3B3-205ENST00000564899 MYO3AQ8NEV4 1616 aa16.72■□□□□ 0.27
SF3B3-205ENST00000564899 ESF1Q9H501 851 aaKnown RBP16.72■□□□□ 0.27
SF3B3-205ENST00000564899 CLTCQ00610 1675 aaKnown RBP16.72■□□□□ 0.27
SF3B3-205ENST00000564899 CNTLNQ9NXG0 1405 aa16.71■□□□□ 0.27
SF3B3-205ENST00000564899 ZMYM3Q14202 1370 aa16.71■□□□□ 0.27
SF3B3-205ENST00000564899 NPATQ14207 1427 aa16.7■□□□□ 0.26
SF3B3-205ENST00000564899 PLEKHH2Q8IVE3 1493 aa16.7■□□□□ 0.26
SF3B3-205ENST00000564899 ZNF142P52746 1687 aaPredicted RBP16.69■□□□□ 0.26
SF3B3-205ENST00000564899 UBAP1LF5GYI3 381 aa16.69■□□□□ 0.26
SF3B3-205ENST00000564899 DAPK1P53355 1430 aa16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 70 ms