RNA–Protein interactions for RNA: ENST00000564353.5

CLK3-215, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,847 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-215ENST00000564353 CCER2I3L3R5 266 aa18.85■□□□□ 0.61
CLK3-215ENST00000564353 NEFLP07196 543 aa18.85■□□□□ 0.61
CLK3-215ENST00000564353 EIF4G3O43432 1585 aaKnown RBP18.84■□□□□ 0.61
CLK3-215ENST00000564353 SLC4A1APQ9BWU0 796 aaKnown RBP18.84■□□□□ 0.61
CLK3-215ENST00000564353 EIF4G2P78344 907 aaKnown RBP eCLIP18.82■□□□□ 0.6
CLK3-215ENST00000564353 KDM5BQ9UGL1 1544 aa18.82■□□□□ 0.6
CLK3-215ENST00000564353 NBPF8Q3BBV2 869 aa18.82■□□□□ 0.6
CLK3-215ENST00000564353 HECW1Q76N89 1606 aa18.8■□□□□ 0.6
CLK3-215ENST00000564353 ARHGEF11O15085 1522 aa18.8■□□□□ 0.6
CLK3-215ENST00000564353 GRIN2AQ12879 1464 aa18.8■□□□□ 0.6
CLK3-215ENST00000564353 FAM9BQ8IZU0 186 aa18.79■□□□□ 0.6
CLK3-215ENST00000564353 PRG4Q92954 1404 aaPredicted RBP18.77■□□□□ 0.6
CLK3-215ENST00000564353 KIAA0586Q9BVV6 1533 aa18.77■□□□□ 0.6
CLK3-215ENST00000564353 CFDP1Q9UEE9 299 aaPredicted RBP18.77■□□□□ 0.59
CLK3-215ENST00000564353 DISP1Q96F81 1524 aa18.75■□□□□ 0.59
CLK3-215ENST00000564353 TCOF1Q13428 1488 aaKnown RBP18.75■□□□□ 0.59
CLK3-215ENST00000564353 ABCC5O15440 1437 aa18.73■□□□□ 0.59
CLK3-215ENST00000564353 DAPK1P53355 1430 aa18.73■□□□□ 0.59
CLK3-215ENST00000564353 NUP153P49790 1475 aaKnown RBP18.72■□□□□ 0.59
CLK3-215ENST00000564353 CDK11AQ9UQ88 783 aaPredicted RBP18.72■□□□□ 0.59
CLK3-215ENST00000564353 PLB1Q6P1J6 1458 aa18.71■□□□□ 0.59
CLK3-215ENST00000564353 JPH4Q96JJ6 628 aa18.71■□□□□ 0.59
CLK3-215ENST00000564353 MIA2Q96PC5 1412 aa18.7■□□□□ 0.58
CLK3-215ENST00000564353 SYNJ2O15056 1496 aa18.69■□□□□ 0.58
CLK3-215ENST00000564353 ERICH6Q7L0X2 663 aa18.69■□□□□ 0.58
CLK3-215ENST00000564353 CEP170Q5SW79 1584 aa18.68■□□□□ 0.58
CLK3-215ENST00000564353 MAGI1Q96QZ7 1491 aaPredicted RBP18.68■□□□□ 0.58
CLK3-215ENST00000564353 MRS2Q9HD23 443 aa18.68■□□□□ 0.58
CLK3-215ENST00000564353 ANKRD30BQ9BXX2 1392 aa18.67■□□□□ 0.58
CLK3-215ENST00000564353 KIAA0556O60303 1618 aa18.66■□□□□ 0.58
CLK3-215ENST00000564353 PKD2Q13563 968 aa18.65■□□□□ 0.58
CLK3-215ENST00000564353 GCC2Q8IWJ2 1684 aa18.64■□□□□ 0.58
CLK3-215ENST00000564353 KDM2AQ9Y2K7 1162 aa18.64■□□□□ 0.58
CLK3-215ENST00000564353 KIF7Q2M1P5 1343 aa18.64■□□□□ 0.57
CLK3-215ENST00000564353 PRKRIP1Q9H875 184 aaPredicted RBP18.64■□□□□ 0.57
CLK3-215ENST00000564353 CCDC7Q96M83 1385 aa18.63■□□□□ 0.57
CLK3-215ENST00000564353 CNTLNQ9NXG0 1405 aa18.6■□□□□ 0.57
CLK3-215ENST00000564353 RBM19Q9Y4C8 960 aaKnown RBP18.59■□□□□ 0.57
CLK3-215ENST00000564353 AKNAQ7Z591 1439 aa18.59■□□□□ 0.57
CLK3-215ENST00000564353 RPRD2Q5VT52 1461 aaKnown RBP18.58■□□□□ 0.57
CLK3-215ENST00000564353 HNRNPMP52272 730 aaKnown RBP eCLIP18.58■□□□□ 0.57
CLK3-215ENST00000564353 RAPGEF6Q8TEU7 1601 aa18.58■□□□□ 0.57
CLK3-215ENST00000564353 CAMSAP2Q08AD1 1489 aa18.58■□□□□ 0.56
CLK3-215ENST00000564353 NUP160Q12769 1436 aa18.58■□□□□ 0.56
CLK3-215ENST00000564353 PLEKHD1A6NEE1 506 aa18.56■□□□□ 0.56
CLK3-215ENST00000564353 ROCK1Q13464 1354 aa18.56■□□□□ 0.56
CLK3-215ENST00000564353 TROQ12816 1431 aaPredicted RBP18.56■□□□□ 0.56
CLK3-215ENST00000564353 KIF14Q15058 1648 aa18.56■□□□□ 0.56
CLK3-215ENST00000564353 NCOA1Q15788 1441 aa18.56■□□□□ 0.56
CLK3-215ENST00000564353 TEX14Q8IWB6 1497 aa18.55■□□□□ 0.56
CLK3-215ENST00000564353 GPATCH8Q9UKJ3 1502 aaKnown RBP18.55■□□□□ 0.56
CLK3-215ENST00000564353 DNMT1P26358 1616 aaKnown RBP18.54■□□□□ 0.56
CLK3-215ENST00000564353 ANP32EQ9BTT0 268 aa18.53■□□□□ 0.56
CLK3-215ENST00000564353 PZPP20742 1482 aa18.53■□□□□ 0.56
CLK3-215ENST00000564353 CARMIL2Q6F5E8 1435 aa18.53■□□□□ 0.56
CLK3-215ENST00000564353 NUP155O75694 1391 aa18.52■□□□□ 0.56
CLK3-215ENST00000564353 B4GALNT3Q6L9W6 998 aa18.5■□□□□ 0.55
CLK3-215ENST00000564353 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.49■□□□□ 0.55
CLK3-215ENST00000564353 USP47Q96K76 1375 aa18.49■□□□□ 0.55
CLK3-215ENST00000564353 TSPY4P0CV99 314 aa18.48■□□□□ 0.55
CLK3-215ENST00000564353 TSPY10P0CW01 314 aa18.48■□□□□ 0.55
CLK3-215ENST00000564353 RGL3Q3MIN7 710 aa18.48■□□□□ 0.55
CLK3-215ENST00000564353 DCAF11Q8TEB1 546 aa18.48■□□□□ 0.55
CLK3-215ENST00000564353 ANKRD50Q9ULJ7 1429 aa18.47■□□□□ 0.55
CLK3-215ENST00000564353 CARD11Q9BXL7 1154 aa18.47■□□□□ 0.55
CLK3-215ENST00000564353 ANKRD30AQ9BXX3 1397 aa18.47■□□□□ 0.55
CLK3-215ENST00000564353 SPATA31E1Q6ZUB1 1445 aa18.46■□□□□ 0.55
CLK3-215ENST00000564353 SALL2Q9Y467 1007 aaPredicted RBP18.45■□□□□ 0.54
CLK3-215ENST00000564353 KIAA1107Q9UPP5 1409 aa18.45■□□□□ 0.54
CLK3-215ENST00000564353 ST20-MTHFSA0A0A6YYL1 179 aa18.43■□□□□ 0.54
CLK3-215ENST00000564353 ATP10BO94823 1461 aa18.41■□□□□ 0.54
CLK3-215ENST00000564353 PTPRGP23470 1445 aa18.41■□□□□ 0.54
CLK3-215ENST00000564353 C9orf84Q5VXU9 1444 aa18.4■□□□□ 0.54
CLK3-215ENST00000564353 KIF15Q9NS87 1388 aa18.38■□□□□ 0.53
CLK3-215ENST00000564353 ZBED9Q6R2W3 1325 aa18.37■□□□□ 0.53
CLK3-215ENST00000564353 DHX29Q7Z478 1369 aaKnown RBP18.36■□□□□ 0.53
CLK3-215ENST00000564353 TMC1Q8TDI8 760 aa18.36■□□□□ 0.53
CLK3-215ENST00000564353 MSH5O43196 834 aa18.36■□□□□ 0.53
CLK3-215ENST00000564353 ABCA8O94911 1581 aa18.35■□□□□ 0.53
CLK3-215ENST00000564353 CHD1O14646 1710 aa18.35■□□□□ 0.53
CLK3-215ENST00000564353 BCORL1Q5H9F3 1711 aa18.34■□□□□ 0.53
CLK3-215ENST00000564353 NBPF1Q3BBV0 1214 aa18.34■□□□□ 0.53
CLK3-215ENST00000564353 PPP4R2Q9NY27 417 aa18.34■□□□□ 0.53
CLK3-215ENST00000564353 ERCC6L2Q5T890 1561 aa18.32■□□□□ 0.52
CLK3-215ENST00000564353 ITSN2Q9NZM3 1697 aa18.31■□□□□ 0.52
CLK3-215ENST00000564353 MBD5Q9P267 1494 aa18.3■□□□□ 0.52
CLK3-215ENST00000564353 ADGRL2O95490 1459 aa18.3■□□□□ 0.52
CLK3-215ENST00000564353 ABCC10Q5T3U5 1492 aa18.3■□□□□ 0.52
CLK3-215ENST00000564353 ROCK2O75116 1388 aaKnown RBP18.3■□□□□ 0.52
CLK3-215ENST00000564353 CDC42BPAQ5VT25 1732 aa18.27■□□□□ 0.52
CLK3-215ENST00000564353 ADGBQ8N7X0 1667 aa18.27■□□□□ 0.51
CLK3-215ENST00000564353 CC2D1BQ5T0F9 858 aaKnown RBP18.26■□□□□ 0.51
CLK3-215ENST00000564353 PNISRQ8TF01 805 aaKnown RBP18.26■□□□□ 0.51
CLK3-215ENST00000564353 CROCC2H7BZ55 1655 aa18.23■□□□□ 0.51
CLK3-215ENST00000564353 KDM5CP41229 1560 aa18.22■□□□□ 0.51
CLK3-215ENST00000564353 NUDCQ9Y266 331 aa18.22■□□□□ 0.51
CLK3-215ENST00000564353 ADCY10Q96PN6 1610 aa18.22■□□□□ 0.51
CLK3-215ENST00000564353 CCDC136Q96JN2 1154 aa18.19■□□□□ 0.5
CLK3-215ENST00000564353 CCDC144AA2RUR9 1427 aa18.19■□□□□ 0.5
CLK3-215ENST00000564353 RALGAPBQ86X10 1494 aa18.19■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms