RNA–Protein interactions for RNA: ENST00000563498.1

NME3-204, Transcript of NME/NM23 nucleoside diphosphate kinase 3, humanhuman

TSL 2 BASIC

Gene NME3, Length 920 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NME3-204ENST00000563498 SIGLEC1Q9BZZ2 1709 aa30.98■■■□□ 2.55
NME3-204ENST00000563498 CDK11AQ9UQ88 783 aaPredicted RBP30.96■■■□□ 2.55
NME3-204ENST00000563498 MYO5CQ9NQX4 1742 aa30.94■■■□□ 2.54
NME3-204ENST00000563498 EFCAB2Q5VUJ9 269 aa30.93■■■□□ 2.54
NME3-204ENST00000563498 ATP1B4Q9UN42 357 aaPredicted RBP30.92■■■□□ 2.54
NME3-204ENST00000563498 KIF14Q15058 1648 aa30.89■■■□□ 2.54
NME3-204ENST00000563498 ATP10AO60312 1499 aa30.89■■■□□ 2.53
NME3-204ENST00000563498 EHMT2Q96KQ7 1210 aa30.88■■■□□ 2.53
NME3-204ENST00000563498 TROQ12816 1431 aaPredicted RBP30.88■■■□□ 2.53
NME3-204ENST00000563498 FER1L4A9Z1Z3 1794 aa30.87■■■□□ 2.53
NME3-204ENST00000563498 C9orf84Q5VXU9 1444 aa30.86■■■□□ 2.53
NME3-204ENST00000563498 ARHGEF12Q9NZN5 1544 aa30.83■■■□□ 2.53
NME3-204ENST00000563498 ZNF518AQ6AHZ1 1483 aa30.83■■■□□ 2.53
NME3-204ENST00000563498 CLIP1P30622 1438 aa30.83■■■□□ 2.53
NME3-204ENST00000563498 MLECQ14165 292 aa30.83■■■□□ 2.53
NME3-204ENST00000563498 CHIC1Q5VXU3 224 aa30.83■■■□□ 2.53
NME3-204ENST00000563498 HSPA2P54652 639 aa30.8■■■□□ 2.52
NME3-204ENST00000563498 PLPPR3Q6T4P5 718 aa30.8■■■□□ 2.52
NME3-204ENST00000563498 KDM5CP41229 1560 aa30.79■■■□□ 2.52
NME3-204ENST00000563498 ARHGAP5Q13017 1502 aa30.79■■■□□ 2.52
NME3-204ENST00000563498 LRRIQ1Q96JM4 1722 aa30.78■■■□□ 2.52
NME3-204ENST00000563498 AFAP1Q8N556 730 aa30.72■■■□□ 2.51
NME3-204ENST00000563498 CCDC18Q5T9S5 1454 aa30.7■■■□□ 2.51
NME3-204ENST00000563498 CASKIN1Q8WXD9 1431 aa30.69■■■□□ 2.5
NME3-204ENST00000563498 REREQ9P2R6 1566 aa30.69■■■□□ 2.5
NME3-204ENST00000563498 CDC42BPBQ9Y5S2 1711 aa30.69■■■□□ 2.5
NME3-204ENST00000563498 PREX1Q8TCU6 1659 aa30.68■■■□□ 2.5
NME3-204ENST00000563498 DIP2CQ9Y2E4 1556 aa30.67■■■□□ 2.5
NME3-204ENST00000563498 MLH3Q9UHC1 1453 aa30.67■■■□□ 2.5
NME3-204ENST00000563498 PREX2Q70Z35 1606 aa30.66■■■□□ 2.5
NME3-204ENST00000563498 ABCC1P33527 1531 aa30.63■■■□□ 2.49
NME3-204ENST00000563498 CEBPAP49715 358 aaPredicted RBP30.61■■■□□ 2.49
NME3-204ENST00000563498 MYT1LQ9UL68 1186 aa30.61■■■□□ 2.49
NME3-204ENST00000563498 ABCA6Q8N139 1617 aa30.61■■■□□ 2.49
NME3-204ENST00000563498 AGLP35573 1532 aa30.58■■■□□ 2.49
NME3-204ENST00000563498 TRAPPC8Q9Y2L5 1435 aa30.58■■■□□ 2.49
NME3-204ENST00000563498 CERKQ8TCT0 537 aa30.57■■■□□ 2.48
NME3-204ENST00000563498 ITSN2Q9NZM3 1697 aa30.57■■■□□ 2.48
NME3-204ENST00000563498 FYCO1Q9BQS8 1478 aa30.56■■■□□ 2.48
NME3-204ENST00000563498 UHRF1BP1Q6BDS2 1440 aa30.54■■■□□ 2.48
NME3-204ENST00000563498 CDC42BPAQ5VT25 1732 aa30.53■■■□□ 2.48
NME3-204ENST00000563498 SETD1BQ9UPS6 1966 aaKnown RBP30.53■■■□□ 2.48
NME3-204ENST00000563498 DMRT2Q9Y5R5 561 aa30.5■■■□□ 2.47
NME3-204ENST00000563498 KIDINS220Q9ULH0 1771 aa30.49■■■□□ 2.47
NME3-204ENST00000563498 C3P01024 1663 aa30.49■■■□□ 2.47
NME3-204ENST00000563498 STRCQ7RTU9 1775 aa30.48■■■□□ 2.47
NME3-204ENST00000563498 ESF1Q9H501 851 aaKnown RBP30.46■■■□□ 2.47
NME3-204ENST00000563498 SAMD9LQ8IVG5 1584 aa30.43■■■□□ 2.46
NME3-204ENST00000563498 CNTLNQ9NXG0 1405 aa30.43■■■□□ 2.46
NME3-204ENST00000563498 GPATCH8Q9UKJ3 1502 aaKnown RBP30.42■■■□□ 2.46
NME3-204ENST00000563498 SYCP2Q9BX26 1530 aa30.38■■■□□ 2.45
NME3-204ENST00000563498 ZNF777Q9ULD5 760 aaPredicted RBP30.37■■■□□ 2.45
NME3-204ENST00000563498 PTPRTO14522 1441 aa30.36■■■□□ 2.45
NME3-204ENST00000563498 KIAA1107Q9UPP5 1409 aa30.36■■■□□ 2.45
NME3-204ENST00000563498 PLEKHH2Q8IVE3 1493 aa30.34■■■□□ 2.45
NME3-204ENST00000563498 SPAG9O60271 1321 aaKnown RBP30.34■■■□□ 2.45
NME3-204ENST00000563498 MROH2AA6NES4 1674 aa30.33■■■□□ 2.45
NME3-204ENST00000563498 NPATQ14207 1427 aa30.31■■■□□ 2.44
NME3-204ENST00000563498 HNRNPMP52272 730 aaKnown RBP eCLIP30.3■■■□□ 2.44
NME3-204ENST00000563498 CFDP1Q9UEE9 299 aaPredicted RBP30.3■■■□□ 2.44
NME3-204ENST00000563498 ATP7AQ04656 1500 aa30.3■■■□□ 2.44
NME3-204ENST00000563498 CCNB3Q8WWL7 1395 aa30.28■■■□□ 2.44
NME3-204ENST00000563498 INO80Q9ULG1 1556 aaPredicted RBP30.28■■■□□ 2.44
NME3-204ENST00000563498 PLXNC1O60486 1568 aa30.27■■■□□ 2.44
NME3-204ENST00000563498 NCOA1Q15788 1441 aa30.26■■■□□ 2.43
NME3-204ENST00000563498 ZMYM3Q14202 1370 aa30.26■■■□□ 2.43
NME3-204ENST00000563498 SUPT6HQ7KZ85 1726 aaKnown RBP30.25■■■□□ 2.43
NME3-204ENST00000563498 MTUS2Q5JR59 1369 aa30.24■■■□□ 2.43
NME3-204ENST00000563498 A2MP01023 1474 aa30.23■■■□□ 2.43
NME3-204ENST00000563498 LTBP4Q8N2S1 1624 aa30.18■■■□□ 2.42
NME3-204ENST00000563498 CAMSAP1Q5T5Y3 1602 aa30.17■■■□□ 2.42
NME3-204ENST00000563498 CLTCQ00610 1675 aaKnown RBP30.17■■■□□ 2.42
NME3-204ENST00000563498 TIAM1Q13009 1591 aa30.15■■■□□ 2.42
NME3-204ENST00000563498 ADGBQ8N7X0 1667 aa30.15■■■□□ 2.42
NME3-204ENST00000563498 IQSEC2Q5JU85 1478 aa30.15■■■□□ 2.42
NME3-204ENST00000563498 EHBP1L1Q8N3D4 1523 aa30.15■■■□□ 2.42
NME3-204ENST00000563498 PPP6R1Q9UPN7 881 aa30.14■■■□□ 2.42
NME3-204ENST00000563498 ZNF142P52746 1687 aaPredicted RBP30.12■■■□□ 2.41
NME3-204ENST00000563498 PTPRKQ15262 1439 aa30.12■■■□□ 2.41
NME3-204ENST00000563498 MBD5Q9P267 1494 aa30.12■■■□□ 2.41
NME3-204ENST00000563498 MYO3AQ8NEV4 1616 aa30.11■■■□□ 2.41
NME3-204ENST00000563498 CEP162Q5TB80 1403 aa30.1■■■□□ 2.41
NME3-204ENST00000563498 RTEL1-TNFRSF6BF6WH68 1400 aa30.09■■■□□ 2.41
NME3-204ENST00000563498 PLA2R1Q13018 1463 aa30.09■■■□□ 2.41
NME3-204ENST00000563498 GGT6Q6P531 493 aa30.09■■■□□ 2.41
NME3-204ENST00000563498 ZNF644Q9H582 1327 aaPredicted RBP30.09■■■□□ 2.41
NME3-204ENST00000563498 CEP170BQ9Y4F5 1589 aaPredicted RBP30.07■■■□□ 2.4
NME3-204ENST00000563498 PKD2Q13563 968 aa30.04■■■□□ 2.4
NME3-204ENST00000563498 NCKAP5LQ9HCH0 1330 aa30.02■■■□□ 2.4
NME3-204ENST00000563498 TCOF1Q13428 1488 aaKnown RBP30.02■■■□□ 2.4
NME3-204ENST00000563498 DHX29Q7Z478 1369 aaKnown RBP30.02■■■□□ 2.4
NME3-204ENST00000563498 DISP3Q9P2K9 1392 aa30■■■□□ 2.39
NME3-204ENST00000563498 CCDC141Q6ZP82 1450 aa29.97■■■□□ 2.39
NME3-204ENST00000563498 FAM135AQ9P2D6 1515 aa29.96■■■□□ 2.39
NME3-204ENST00000563498 A2ML1A8K2U0 1454 aa29.95■■■□□ 2.39
NME3-204ENST00000563498 NCOA2Q15596 1464 aa29.95■■■□□ 2.39
NME3-204ENST00000563498 RSPH4AQ5TD94 716 aa29.95■■■□□ 2.39
NME3-204ENST00000563498 ZNF335Q9H4Z2 1342 aaPredicted RBP29.95■■■□□ 2.38
NME3-204ENST00000563498 CAMSAP2Q08AD1 1489 aa29.93■■■□□ 2.38
NME3-204ENST00000563498 DNMT1P26358 1616 aaKnown RBP29.9■■■□□ 2.38
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms