RNA–Protein interactions for RNA: ENST00000562543.5

TCF4-213, Transcript of transcription factor 4, humanhuman

TSL 1 (best)

Gene TCF4, Length 598 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCF4-213ENST00000562543 TRIM35Q9UPQ4 493 aa12.28□□□□□ -0.44
TCF4-213ENST00000562543 DCAF8Q5TAQ9 597 aa12.27□□□□□ -0.45
TCF4-213ENST00000562543 PLSCR2Q9NRY7 297 aa12.27□□□□□ -0.45
TCF4-213ENST00000562543 FAM69CQ0P6D2 419 aa12.26□□□□□ -0.45
TCF4-213ENST00000562543 SGIP1Q9BQI5 828 aa12.26□□□□□ -0.45
TCF4-213ENST00000562543 POTEMA6NI47 508 aa12.25□□□□□ -0.45
TCF4-213ENST00000562543 SEC24BO95487 1268 aa12.25□□□□□ -0.45
TCF4-213ENST00000562543 PYGBP11216 843 aa12.25□□□□□ -0.45
TCF4-213ENST00000562543 DNMBPQ6XZF7 1577 aa12.24□□□□□ -0.45
TCF4-213ENST00000562543 MAMSTRQ6ZN01 415 aa12.24□□□□□ -0.45
TCF4-213ENST00000562543 MAGI1Q96QZ7 1491 aaPredicted RBP12.24□□□□□ -0.45
TCF4-213ENST00000562543 ABCC8Q09428 1581 aa12.23□□□□□ -0.45
TCF4-213ENST00000562543 POTEGQ6S5H5 508 aa12.22□□□□□ -0.45
TCF4-213ENST00000562543 CHMP7Q8WUX9 453 aaPredicted RBP12.22□□□□□ -0.45
TCF4-213ENST00000562543 TMEM106CQ9BVX2 250 aa12.22□□□□□ -0.45
TCF4-213ENST00000562543 SCUBE2Q9NQ36 999 aa12.22□□□□□ -0.45
TCF4-213ENST00000562543 FBXO3Q9UK99 471 aa12.22□□□□□ -0.45
TCF4-213ENST00000562543 TSPOAP1O95153 1857 aa12.22□□□□□ -0.45
TCF4-213ENST00000562543 MAPKBP1O60336 1514 aa12.21□□□□□ -0.45
TCF4-213ENST00000562543 WIZO95785 1651 aa12.21□□□□□ -0.45
TCF4-213ENST00000562543 WDR97A6NE52 1622 aa12.2□□□□□ -0.46
TCF4-213ENST00000562543 FAM163AQ96GL9 167 aaPredicted RBP12.19□□□□□ -0.46
TCF4-213ENST00000562543 LCE2DQ5TA82 110 aaPredicted RBP12.18□□□□□ -0.46
TCF4-213ENST00000562543 POLA1P09884 1462 aaPredicted RBP12.18□□□□□ -0.46
TCF4-213ENST00000562543 PCDHB8Q9UN66 801 aa12.17□□□□□ -0.46
TCF4-213ENST00000562543 CEP170Q5SW79 1584 aa12.17□□□□□ -0.46
TCF4-213ENST00000562543 VASPP50552 380 aaPredicted RBP12.16□□□□□ -0.46
TCF4-213ENST00000562543 KLHL34Q8N239 644 aa12.16□□□□□ -0.46
TCF4-213ENST00000562543 TDRD9Q8NDG6 1382 aaKnown RBP12.14□□□□□ -0.47
TCF4-213ENST00000562543 TOP2BQ02880 1626 aa12.13□□□□□ -0.47
TCF4-213ENST00000562543 IER5LQ5T953 404 aa12.13□□□□□ -0.47
TCF4-213ENST00000562543 SHROOM2Q13796 1616 aa12.11□□□□□ -0.47
TCF4-213ENST00000562543 RAD54L2Q9Y4B4 1467 aa12.11□□□□□ -0.47
TCF4-213ENST00000562543 GRIN2BQ13224 1484 aa12.1□□□□□ -0.47
TCF4-213ENST00000562543 PPRC1Q5VV67 1664 aaKnown RBP12.08□□□□□ -0.48
TCF4-213ENST00000562543 IRX5P78411 483 aaPredicted RBP12.07□□□□□ -0.48
TCF4-213ENST00000562543 PLCG2P16885 1265 aa12.06□□□□□ -0.48
TCF4-213ENST00000562543 CERKQ8TCT0 537 aa12.06□□□□□ -0.48
TCF4-213ENST00000562543 PBRM1Q86U86 1689 aa12.04□□□□□ -0.48
TCF4-213ENST00000562543 SLAIN1Q8ND83 568 aa12.02□□□□□ -0.49
TCF4-213ENST00000562543 SOGA1O94964 1423 aa12.02□□□□□ -0.49
TCF4-213ENST00000562543 COL17A1Q9UMD9 1497 aaPredicted RBP12.02□□□□□ -0.49
TCF4-213ENST00000562543 GSE1Q14687 1217 aa12.01□□□□□ -0.49
TCF4-213ENST00000562543 PCF11O94913 1555 aaKnown RBP12.01□□□□□ -0.49
TCF4-213ENST00000562543 ADCY10Q96PN6 1610 aa12□□□□□ -0.49
TCF4-213ENST00000562543 IFNLR1Q8IU57 520 aaPredicted RBP12□□□□□ -0.49
TCF4-213ENST00000562543 OCEL1Q9H607 264 aa12□□□□□ -0.49
TCF4-213ENST00000562543 NUP160Q12769 1436 aa11.99□□□□□ -0.49
TCF4-213ENST00000562543 TOP2AP11388 1531 aaKnown RBP11.99□□□□□ -0.49
TCF4-213ENST00000562543 GRIN2AQ12879 1464 aa11.95□□□□□ -0.5
TCF4-213ENST00000562543 ZNF467Q7Z7K2 595 aaPredicted RBP11.93□□□□□ -0.5
TCF4-213ENST00000562543 CHRM1P11229 460 aaPredicted RBP11.92□□□□□ -0.5
TCF4-213ENST00000562543 CIZ1Q9ULV3 898 aaPredicted RBP11.92□□□□□ -0.5
TCF4-213ENST00000562543 GLI2P10070 1586 aa11.92□□□□□ -0.5
TCF4-213ENST00000562543 PTPRMP28827 1452 aa11.91□□□□□ -0.5
TCF4-213ENST00000562543 FGD5Q6ZNL6 1462 aa11.91□□□□□ -0.5
TCF4-213ENST00000562543 ST18O60284 1047 aa11.91□□□□□ -0.5
TCF4-213ENST00000562543 PSEN1P49768 467 aa11.91□□□□□ -0.5
TCF4-213ENST00000562543 PDCD7Q8N8D1 485 aaKnown RBP11.9□□□□□ -0.5
TCF4-213ENST00000562543 SPOCK2Q92563 424 aa11.9□□□□□ -0.5
TCF4-213ENST00000562543 PCDH10Q9P2E7 1040 aa11.9□□□□□ -0.5
TCF4-213ENST00000562543 PRG4Q92954 1404 aaPredicted RBP11.89□□□□□ -0.51
TCF4-213ENST00000562543 GOLGA2Q08379 1002 aa11.88□□□□□ -0.51
TCF4-213ENST00000562543 KIF21BO75037 1637 aa11.87□□□□□ -0.51
TCF4-213ENST00000562543 ABCA5Q8WWZ7 1642 aa11.87□□□□□ -0.51
TCF4-213ENST00000562543 MKRN3Q13064 507 aaKnown RBP11.87□□□□□ -0.51
TCF4-213ENST00000562543 ADAMTSL3P82987 1691 aa11.86□□□□□ -0.51
TCF4-213ENST00000562543 ADAMTS12P58397 1594 aa11.85□□□□□ -0.51
TCF4-213ENST00000562543 CDAN1Q8IWY9 1227 aa11.84□□□□□ -0.51
TCF4-213ENST00000562543 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.84□□□□□ -0.51
TCF4-213ENST00000562543 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.84□□□□□ -0.51
TCF4-213ENST00000562543 MAP3K4Q9Y6R4 1608 aa11.82□□□□□ -0.52
TCF4-213ENST00000562543 DPY19L2Q6NUT2 758 aa11.82□□□□□ -0.52
TCF4-213ENST00000562543 CCDC88BA6NC98 1476 aa11.81□□□□□ -0.52
TCF4-213ENST00000562543 TEX14Q8IWB6 1497 aa11.81□□□□□ -0.52
TCF4-213ENST00000562543 PDAP1Q13442 181 aaKnown RBP11.8□□□□□ -0.52
TCF4-213ENST00000562543 CABP2Q9NPB3 220 aa11.8□□□□□ -0.52
TCF4-213ENST00000562543 MARVELD3Q96A59 401 aa11.77□□□□□ -0.53
TCF4-213ENST00000562543 C3orf67Q6ZVT6 689 aa11.76□□□□□ -0.53
TCF4-213ENST00000562543 PLB1Q6P1J6 1458 aa11.76□□□□□ -0.53
TCF4-213ENST00000562543 HSPA2P54652 639 aa11.75□□□□□ -0.53
TCF4-213ENST00000562543 L3MBTL3Q96JM7 780 aaPredicted RBP11.75□□□□□ -0.53
TCF4-213ENST00000562543 ASXL2Q76L83 1435 aa11.75□□□□□ -0.53
TCF4-213ENST00000562543 MED1Q15648 1581 aaPredicted RBP11.74□□□□□ -0.53
TCF4-213ENST00000562543 CUX1P39880 1505 aa11.73□□□□□ -0.53
TCF4-213ENST00000562543 ABCA10Q8WWZ4 1543 aa11.73□□□□□ -0.53
TCF4-213ENST00000562543 MADDQ8WXG6 1647 aa11.73□□□□□ -0.53
TCF4-213ENST00000562543 JPH4Q96JJ6 628 aa11.73□□□□□ -0.53
TCF4-213ENST00000562543 KIAA0586Q9BVV6 1533 aa11.73□□□□□ -0.53
TCF4-213ENST00000562543 RUSC2Q8N2Y8 1516 aa11.72□□□□□ -0.53
TCF4-213ENST00000562543 BCORL1Q5H9F3 1711 aa11.7□□□□□ -0.54
TCF4-213ENST00000562543 SNPHO15079 494 aa11.7□□□□□ -0.54
TCF4-213ENST00000562543 EPRSP07814 1512 aaKnown RBP11.7□□□□□ -0.54
TCF4-213ENST00000562543 ABCC2Q92887 1545 aa11.7□□□□□ -0.54
TCF4-213ENST00000562543 FHAD1B1AJZ9 1412 aa11.69□□□□□ -0.54
TCF4-213ENST00000562543 IQSEC2Q5JU85 1478 aa11.69□□□□□ -0.54
TCF4-213ENST00000562543 CUL7Q14999 1698 aa11.68□□□□□ -0.54
TCF4-213ENST00000562543 EFCAB3Q8N7B9 438 aa11.66□□□□□ -0.54
TCF4-213ENST00000562543 TMEM121BQ9BXQ6 578 aaPredicted RBP11.66□□□□□ -0.54
TCF4-213ENST00000562543 RIMS1Q86UR5 1692 aaKnown RBP11.65□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 155 ms