RNA–Protein interactions for RNA: ENST00000561976.5

VPS9D1-202, Transcript of VPS9 domain containing 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,791 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-202ENST00000561976 B4GALNT3Q6L9W6 998 aa19.14■□□□□ 0.65
VPS9D1-202ENST00000561976 ZBED9Q6R2W3 1325 aa19.13■□□□□ 0.65
VPS9D1-202ENST00000561976 KIF21AQ7Z4S6 1674 aa19.11■□□□□ 0.65
VPS9D1-202ENST00000561976 NBPF8Q3BBV2 869 aa19.11■□□□□ 0.65
VPS9D1-202ENST00000561976 MIA2Q96PC5 1412 aa19.1■□□□□ 0.65
VPS9D1-202ENST00000561976 EPRSP07814 1512 aaKnown RBP19.1■□□□□ 0.65
VPS9D1-202ENST00000561976 LAMC3Q9Y6N6 1575 aa19.1■□□□□ 0.65
VPS9D1-202ENST00000561976 CDK13Q14004 1512 aaKnown RBP19.08■□□□□ 0.64
VPS9D1-202ENST00000561976 KIF7Q2M1P5 1343 aa19.07■□□□□ 0.64
VPS9D1-202ENST00000561976 CNGB1Q14028 1251 aaPredicted RBP19.07■□□□□ 0.64
VPS9D1-202ENST00000561976 SLC4A1APQ9BWU0 796 aaKnown RBP19.06■□□□□ 0.64
VPS9D1-202ENST00000561976 ANKRD30BQ9BXX2 1392 aa19.06■□□□□ 0.64
VPS9D1-202ENST00000561976 RPRD2Q5VT52 1461 aaKnown RBP19.05■□□□□ 0.64
VPS9D1-202ENST00000561976 POLR3GLQ9BT43 218 aa19.03■□□□□ 0.64
VPS9D1-202ENST00000561976 PDS5BQ9NTI5 1447 aa19.03■□□□□ 0.64
VPS9D1-202ENST00000561976 DAPK1P53355 1430 aa19.01■□□□□ 0.63
VPS9D1-202ENST00000561976 TEX14Q8IWB6 1497 aa19.01■□□□□ 0.63
VPS9D1-202ENST00000561976 IQGAP2Q13576 1575 aa19■□□□□ 0.63
VPS9D1-202ENST00000561976 ROCK1Q13464 1354 aa19■□□□□ 0.63
VPS9D1-202ENST00000561976 ZNF644Q9H582 1327 aaPredicted RBP18.99■□□□□ 0.63
VPS9D1-202ENST00000561976 SPATA31E1Q6ZUB1 1445 aa18.99■□□□□ 0.63
VPS9D1-202ENST00000561976 PRKCSHP14314 528 aaPredicted RBP18.98■□□□□ 0.63
VPS9D1-202ENST00000561976 WDR62O43379 1518 aa18.97■□□□□ 0.63
VPS9D1-202ENST00000561976 ZNF326Q5BKZ1 582 aaKnown RBP18.97■□□□□ 0.63
VPS9D1-202ENST00000561976 ABCC5O15440 1437 aa18.97■□□□□ 0.63
VPS9D1-202ENST00000561976 TARBP1Q13395 1621 aaKnown RBP18.94■□□□□ 0.62
VPS9D1-202ENST00000561976 SMG6Q86US8 1419 aaKnown RBP18.93■□□□□ 0.62
VPS9D1-202ENST00000561976 MYT1LQ9UL68 1186 aa18.93■□□□□ 0.62
VPS9D1-202ENST00000561976 NUDCQ9Y266 331 aa18.93■□□□□ 0.62
VPS9D1-202ENST00000561976 CCDC136Q96JN2 1154 aa18.92■□□□□ 0.62
VPS9D1-202ENST00000561976 DNMT1P26358 1616 aaKnown RBP18.92■□□□□ 0.62
VPS9D1-202ENST00000561976 POLR1AO95602 1720 aaPredicted RBP18.91■□□□□ 0.62
VPS9D1-202ENST00000561976 SENP3-EIF4A1A0A087X0R7 540 aa18.91■□□□□ 0.62
VPS9D1-202ENST00000561976 PBRM1Q86U86 1689 aa18.9■□□□□ 0.62
VPS9D1-202ENST00000561976 NOP58Q9Y2X3 529 aaKnown RBP18.9■□□□□ 0.62
VPS9D1-202ENST00000561976 DHX29Q7Z478 1369 aaKnown RBP18.9■□□□□ 0.62
VPS9D1-202ENST00000561976 USP47Q96K76 1375 aa18.9■□□□□ 0.62
VPS9D1-202ENST00000561976 ADAMTS12P58397 1594 aa18.87■□□□□ 0.61
VPS9D1-202ENST00000561976 TMC1Q8TDI8 760 aa18.86■□□□□ 0.61
VPS9D1-202ENST00000561976 PZPP20742 1482 aa18.85■□□□□ 0.61
VPS9D1-202ENST00000561976 DEKP35659 375 aaKnown RBP18.85■□□□□ 0.61
VPS9D1-202ENST00000561976 CFDP1Q9UEE9 299 aaPredicted RBP18.85■□□□□ 0.61
VPS9D1-202ENST00000561976 ZNF777Q9ULD5 760 aaPredicted RBP18.85■□□□□ 0.61
VPS9D1-202ENST00000561976 PKD2Q13563 968 aa18.84■□□□□ 0.61
VPS9D1-202ENST00000561976 NBR1Q14596 966 aa18.84■□□□□ 0.61
VPS9D1-202ENST00000561976 PAK3O75914 559 aaPredicted RBP18.82■□□□□ 0.6
VPS9D1-202ENST00000561976 ANP32AP39687 249 aaKnown RBP18.82■□□□□ 0.6
VPS9D1-202ENST00000561976 KIAA1107Q9UPP5 1409 aa18.82■□□□□ 0.6
VPS9D1-202ENST00000561976 NUP153P49790 1475 aaKnown RBP18.82■□□□□ 0.6
VPS9D1-202ENST00000561976 RNF123Q5XPI4 1314 aa18.82■□□□□ 0.6
VPS9D1-202ENST00000561976 BCORL1Q5H9F3 1711 aa18.81■□□□□ 0.6
VPS9D1-202ENST00000561976 PNISRQ8TF01 805 aaKnown RBP18.81■□□□□ 0.6
VPS9D1-202ENST00000561976 ARID4BQ4LE39 1312 aaPredicted RBP18.8■□□□□ 0.6
VPS9D1-202ENST00000561976 MBD5Q9P267 1494 aa18.8■□□□□ 0.6
VPS9D1-202ENST00000561976 CAMSAP2Q08AD1 1489 aa18.79■□□□□ 0.6
VPS9D1-202ENST00000561976 CARD11Q9BXL7 1154 aa18.78■□□□□ 0.6
VPS9D1-202ENST00000561976 PRG4Q92954 1404 aaPredicted RBP18.78■□□□□ 0.6
VPS9D1-202ENST00000561976 KIAA0556O60303 1618 aa18.78■□□□□ 0.6
VPS9D1-202ENST00000561976 ROCK2O75116 1388 aaKnown RBP18.77■□□□□ 0.6
VPS9D1-202ENST00000561976 DISP1Q96F81 1524 aa18.77■□□□□ 0.6
VPS9D1-202ENST00000561976 RAPGEF6Q8TEU7 1601 aa18.77■□□□□ 0.59
VPS9D1-202ENST00000561976 KIF14Q15058 1648 aa18.76■□□□□ 0.59
VPS9D1-202ENST00000561976 IPO9Q96P70 1041 aaKnown RBP18.76■□□□□ 0.59
VPS9D1-202ENST00000561976 KIAA0586Q9BVV6 1533 aa18.76■□□□□ 0.59
VPS9D1-202ENST00000561976 TROQ12816 1431 aaPredicted RBP18.75■□□□□ 0.59
VPS9D1-202ENST00000561976 KDM5CP41229 1560 aa18.75■□□□□ 0.59
VPS9D1-202ENST00000561976 ANKRD30AQ9BXX3 1397 aa18.75■□□□□ 0.59
VPS9D1-202ENST00000561976 ZBTB47Q9UFB7 747 aaPredicted RBP18.74■□□□□ 0.59
VPS9D1-202ENST00000561976 KDM2AQ9Y2K7 1162 aa18.74■□□□□ 0.59
VPS9D1-202ENST00000561976 KIF15Q9NS87 1388 aa18.74■□□□□ 0.59
VPS9D1-202ENST00000561976 ADGBQ8N7X0 1667 aa18.72■□□□□ 0.59
VPS9D1-202ENST00000561976 GPATCH8Q9UKJ3 1502 aaKnown RBP18.71■□□□□ 0.59
VPS9D1-202ENST00000561976 ST20-MTHFSA0A0A6YYL1 179 aa18.71■□□□□ 0.59
VPS9D1-202ENST00000561976 ANKRD50Q9ULJ7 1429 aa18.71■□□□□ 0.59
VPS9D1-202ENST00000561976 NUP155O75694 1391 aa18.7■□□□□ 0.58
VPS9D1-202ENST00000561976 MYBBP1AQ9BQG0 1328 aaKnown RBP18.7■□□□□ 0.58
VPS9D1-202ENST00000561976 ITSN2Q9NZM3 1697 aa18.7■□□□□ 0.58
VPS9D1-202ENST00000561976 ADGRL2O95490 1459 aa18.69■□□□□ 0.58
VPS9D1-202ENST00000561976 ZNF608Q9ULD9 1512 aaPredicted RBP18.69■□□□□ 0.58
VPS9D1-202ENST00000561976 RTL5Q5HYW3 569 aaPredicted RBP18.69■□□□□ 0.58
VPS9D1-202ENST00000561976 SALL2Q9Y467 1007 aaPredicted RBP18.69■□□□□ 0.58
VPS9D1-202ENST00000561976 RALGAPBQ86X10 1494 aa18.69■□□□□ 0.58
VPS9D1-202ENST00000561976 MRC2Q9UBG0 1479 aa18.68■□□□□ 0.58
VPS9D1-202ENST00000561976 RALBP1Q15311 655 aa18.68■□□□□ 0.58
VPS9D1-202ENST00000561976 UHRF1BP1Q6BDS2 1440 aa18.68■□□□□ 0.58
VPS9D1-202ENST00000561976 BRD4O60885 1362 aaPredicted RBP18.68■□□□□ 0.58
VPS9D1-202ENST00000561976 RRP1P56182 461 aaKnown RBP18.67■□□□□ 0.58
VPS9D1-202ENST00000561976 DCAF11Q8TEB1 546 aa18.67■□□□□ 0.58
VPS9D1-202ENST00000561976 LRPPRCP42704 1394 aaKnown RBP18.67■□□□□ 0.58
VPS9D1-202ENST00000561976 EXOC6Q8TAG9 804 aa18.66■□□□□ 0.58
VPS9D1-202ENST00000561976 PLB1Q6P1J6 1458 aa18.65■□□□□ 0.58
VPS9D1-202ENST00000561976 NPM2Q86SE8 214 aaKnown RBP18.65■□□□□ 0.58
VPS9D1-202ENST00000561976 RCAN3Q9UKA8 241 aa18.64■□□□□ 0.58
VPS9D1-202ENST00000561976 KTN1Q86UP2 1357 aaKnown RBP18.64■□□□□ 0.57
VPS9D1-202ENST00000561976 GRIN2AQ12879 1464 aa18.63■□□□□ 0.57
VPS9D1-202ENST00000561976 IFT140Q96RY7 1462 aa18.63■□□□□ 0.57
VPS9D1-202ENST00000561976 CROCC2H7BZ55 1655 aa18.63■□□□□ 0.57
VPS9D1-202ENST00000561976 TSPY4P0CV99 314 aa18.62■□□□□ 0.57
VPS9D1-202ENST00000561976 TSPY10P0CW01 314 aa18.62■□□□□ 0.57
VPS9D1-202ENST00000561976 ARHGEF12Q9NZN5 1544 aa18.61■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms