RNA–Protein interactions for RNA: ENST00000561354.1

CARMIL3-204, Transcript of capping protein regulator and myosin 1 linker 3, humanhuman

TSL 4

Gene CARMIL3, Length 564 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CARMIL3-204ENST00000561354 CDK11AQ9UQ88 783 aaPredicted RBP19.6■□□□□ 0.73
CARMIL3-204ENST00000561354 EFCAB2Q5VUJ9 269 aa19.59■□□□□ 0.73
CARMIL3-204ENST00000561354 ATP1B4Q9UN42 357 aaPredicted RBP19.58■□□□□ 0.72
CARMIL3-204ENST00000561354 SIGLEC1Q9BZZ2 1709 aa19.56■□□□□ 0.72
CARMIL3-204ENST00000561354 EHMT2Q96KQ7 1210 aa19.56■□□□□ 0.72
CARMIL3-204ENST00000561354 MYO5CQ9NQX4 1742 aa19.55■□□□□ 0.72
CARMIL3-204ENST00000561354 CHIC1Q5VXU3 224 aa19.54■□□□□ 0.72
CARMIL3-204ENST00000561354 ATP10AO60312 1499 aa19.54■□□□□ 0.72
CARMIL3-204ENST00000561354 TROQ12816 1431 aaPredicted RBP19.53■□□□□ 0.72
CARMIL3-204ENST00000561354 MLECQ14165 292 aa19.52■□□□□ 0.72
CARMIL3-204ENST00000561354 KIF14Q15058 1648 aa19.51■□□□□ 0.71
CARMIL3-204ENST00000561354 C9orf84Q5VXU9 1444 aa19.51■□□□□ 0.71
CARMIL3-204ENST00000561354 CLIP1P30622 1438 aa19.5■□□□□ 0.71
CARMIL3-204ENST00000561354 HSPA2P54652 639 aa19.49■□□□□ 0.71
CARMIL3-204ENST00000561354 PLPPR3Q6T4P5 718 aa19.49■□□□□ 0.71
CARMIL3-204ENST00000561354 FER1L4A9Z1Z3 1794 aa19.49■□□□□ 0.71
CARMIL3-204ENST00000561354 ZNF518AQ6AHZ1 1483 aa19.48■□□□□ 0.71
CARMIL3-204ENST00000561354 ARHGEF12Q9NZN5 1544 aa19.48■□□□□ 0.71
CARMIL3-204ENST00000561354 ARHGAP5Q13017 1502 aa19.47■□□□□ 0.71
CARMIL3-204ENST00000561354 KDM5CP41229 1560 aa19.46■□□□□ 0.71
CARMIL3-204ENST00000561354 AFAP1Q8N556 730 aa19.45■□□□□ 0.7
CARMIL3-204ENST00000561354 LRRIQ1Q96JM4 1722 aa19.45■□□□□ 0.7
CARMIL3-204ENST00000561354 CASKIN1Q8WXD9 1431 aa19.42■□□□□ 0.7
CARMIL3-204ENST00000561354 CCDC18Q5T9S5 1454 aa19.41■□□□□ 0.7
CARMIL3-204ENST00000561354 CDC42BPBQ9Y5S2 1711 aa19.4■□□□□ 0.7
CARMIL3-204ENST00000561354 MLH3Q9UHC1 1453 aa19.4■□□□□ 0.7
CARMIL3-204ENST00000561354 REREQ9P2R6 1566 aa19.4■□□□□ 0.7
CARMIL3-204ENST00000561354 CEBPAP49715 358 aaPredicted RBP19.38■□□□□ 0.69
CARMIL3-204ENST00000561354 MYT1LQ9UL68 1186 aa19.38■□□□□ 0.69
CARMIL3-204ENST00000561354 DIP2CQ9Y2E4 1556 aa19.38■□□□□ 0.69
CARMIL3-204ENST00000561354 PREX1Q8TCU6 1659 aa19.37■□□□□ 0.69
CARMIL3-204ENST00000561354 PREX2Q70Z35 1606 aa19.37■□□□□ 0.69
CARMIL3-204ENST00000561354 ABCC1P33527 1531 aa19.35■□□□□ 0.69
CARMIL3-204ENST00000561354 TRAPPC8Q9Y2L5 1435 aa19.34■□□□□ 0.69
CARMIL3-204ENST00000561354 CERKQ8TCT0 537 aa19.34■□□□□ 0.69
CARMIL3-204ENST00000561354 AGLP35573 1532 aa19.34■□□□□ 0.69
CARMIL3-204ENST00000561354 ABCA6Q8N139 1617 aa19.33■□□□□ 0.69
CARMIL3-204ENST00000561354 SETD1BQ9UPS6 1966 aaKnown RBP19.32■□□□□ 0.68
CARMIL3-204ENST00000561354 FYCO1Q9BQS8 1478 aa19.32■□□□□ 0.68
CARMIL3-204ENST00000561354 ITSN2Q9NZM3 1697 aa19.31■□□□□ 0.68
CARMIL3-204ENST00000561354 UHRF1BP1Q6BDS2 1440 aa19.31■□□□□ 0.68
CARMIL3-204ENST00000561354 DMRT2Q9Y5R5 561 aa19.3■□□□□ 0.68
CARMIL3-204ENST00000561354 CDC42BPAQ5VT25 1732 aa19.29■□□□□ 0.68
CARMIL3-204ENST00000561354 KIDINS220Q9ULH0 1771 aa19.27■□□□□ 0.68
CARMIL3-204ENST00000561354 ESF1Q9H501 851 aaKnown RBP19.27■□□□□ 0.68
CARMIL3-204ENST00000561354 C3P01024 1663 aa19.26■□□□□ 0.67
CARMIL3-204ENST00000561354 STRCQ7RTU9 1775 aa19.26■□□□□ 0.67
CARMIL3-204ENST00000561354 GPATCH8Q9UKJ3 1502 aaKnown RBP19.25■□□□□ 0.67
CARMIL3-204ENST00000561354 CNTLNQ9NXG0 1405 aa19.25■□□□□ 0.67
CARMIL3-204ENST00000561354 SAMD9LQ8IVG5 1584 aa19.23■□□□□ 0.67
CARMIL3-204ENST00000561354 ZNF777Q9ULD5 760 aaPredicted RBP19.23■□□□□ 0.67
CARMIL3-204ENST00000561354 KIAA1107Q9UPP5 1409 aa19.21■□□□□ 0.67
CARMIL3-204ENST00000561354 PTPRTO14522 1441 aa19.2■□□□□ 0.66
CARMIL3-204ENST00000561354 SPAG9O60271 1321 aaKnown RBP19.2■□□□□ 0.66
CARMIL3-204ENST00000561354 SYCP2Q9BX26 1530 aa19.2■□□□□ 0.66
CARMIL3-204ENST00000561354 HNRNPMP52272 730 aaKnown RBP eCLIP19.19■□□□□ 0.66
CARMIL3-204ENST00000561354 PLEKHH2Q8IVE3 1493 aa19.19■□□□□ 0.66
CARMIL3-204ENST00000561354 CFDP1Q9UEE9 299 aaPredicted RBP19.18■□□□□ 0.66
CARMIL3-204ENST00000561354 NPATQ14207 1427 aa19.17■□□□□ 0.66
CARMIL3-204ENST00000561354 MROH2AA6NES4 1674 aa19.16■□□□□ 0.66
CARMIL3-204ENST00000561354 CCNB3Q8WWL7 1395 aa19.16■□□□□ 0.66
CARMIL3-204ENST00000561354 ZMYM3Q14202 1370 aa19.15■□□□□ 0.66
CARMIL3-204ENST00000561354 ATP7AQ04656 1500 aa19.15■□□□□ 0.66
CARMIL3-204ENST00000561354 MTUS2Q5JR59 1369 aa19.14■□□□□ 0.65
CARMIL3-204ENST00000561354 NCOA1Q15788 1441 aa19.13■□□□□ 0.65
CARMIL3-204ENST00000561354 INO80Q9ULG1 1556 aaPredicted RBP19.13■□□□□ 0.65
CARMIL3-204ENST00000561354 PLXNC1O60486 1568 aa19.12■□□□□ 0.65
CARMIL3-204ENST00000561354 A2MP01023 1474 aa19.12■□□□□ 0.65
CARMIL3-204ENST00000561354 SUPT6HQ7KZ85 1726 aaKnown RBP19.11■□□□□ 0.65
CARMIL3-204ENST00000561354 PPP6R1Q9UPN7 881 aa19.09■□□□□ 0.65
CARMIL3-204ENST00000561354 LTBP4Q8N2S1 1624 aa19.08■□□□□ 0.65
CARMIL3-204ENST00000561354 CAMSAP1Q5T5Y3 1602 aa19.07■□□□□ 0.64
CARMIL3-204ENST00000561354 CLTCQ00610 1675 aaKnown RBP19.06■□□□□ 0.64
CARMIL3-204ENST00000561354 MBD5Q9P267 1494 aa19.06■□□□□ 0.64
CARMIL3-204ENST00000561354 TIAM1Q13009 1591 aa19.06■□□□□ 0.64
CARMIL3-204ENST00000561354 EHBP1L1Q8N3D4 1523 aa19.05■□□□□ 0.64
CARMIL3-204ENST00000561354 ZNF644Q9H582 1327 aaPredicted RBP19.05■□□□□ 0.64
CARMIL3-204ENST00000561354 IQSEC2Q5JU85 1478 aa19.05■□□□□ 0.64
CARMIL3-204ENST00000561354 GGT6Q6P531 493 aa19.05■□□□□ 0.64
CARMIL3-204ENST00000561354 PTPRKQ15262 1439 aa19.05■□□□□ 0.64
CARMIL3-204ENST00000561354 ADGBQ8N7X0 1667 aa19.05■□□□□ 0.64
CARMIL3-204ENST00000561354 RTEL1-TNFRSF6BF6WH68 1400 aa19.04■□□□□ 0.64
CARMIL3-204ENST00000561354 CEP162Q5TB80 1403 aa19.04■□□□□ 0.64
CARMIL3-204ENST00000561354 PLA2R1Q13018 1463 aa19.02■□□□□ 0.63
CARMIL3-204ENST00000561354 ZNF142P52746 1687 aaPredicted RBP19.01■□□□□ 0.63
CARMIL3-204ENST00000561354 MYO3AQ8NEV4 1616 aa19.01■□□□□ 0.63
CARMIL3-204ENST00000561354 PKD2Q13563 968 aa19.01■□□□□ 0.63
CARMIL3-204ENST00000561354 DHX29Q7Z478 1369 aaKnown RBP19■□□□□ 0.63
CARMIL3-204ENST00000561354 CEP170BQ9Y4F5 1589 aaPredicted RBP19■□□□□ 0.63
CARMIL3-204ENST00000561354 NCKAP5LQ9HCH0 1330 aa19■□□□□ 0.63
CARMIL3-204ENST00000561354 RSPH4AQ5TD94 716 aa18.98■□□□□ 0.63
CARMIL3-204ENST00000561354 TCOF1Q13428 1488 aaKnown RBP18.97■□□□□ 0.63
CARMIL3-204ENST00000561354 DISP3Q9P2K9 1392 aa18.95■□□□□ 0.62
CARMIL3-204ENST00000561354 NCOA2Q15596 1464 aa18.95■□□□□ 0.62
CARMIL3-204ENST00000561354 CCDC141Q6ZP82 1450 aa18.95■□□□□ 0.62
CARMIL3-204ENST00000561354 ZNF335Q9H4Z2 1342 aaPredicted RBP18.94■□□□□ 0.62
CARMIL3-204ENST00000561354 A2ML1A8K2U0 1454 aa18.93■□□□□ 0.62
CARMIL3-204ENST00000561354 KIF3BO15066 747 aa18.93■□□□□ 0.62
CARMIL3-204ENST00000561354 FAM135AQ9P2D6 1515 aa18.92■□□□□ 0.62
CARMIL3-204ENST00000561354 CAMSAP2Q08AD1 1489 aa18.91■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms