RNA–Protein interactions for RNA: ENST00000560634.1

CSPG4P11-201, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 11, humanhuman

BASIC

Gene CSPG4P11, Length 4,910 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P11-201ENST00000560634 KIAA2012Q0VF49 1180 aa16.74■□□□□ 0.27
CSPG4P11-201ENST00000560634 TAOK2Q9UL54 1235 aa16.73■□□□□ 0.27
CSPG4P11-201ENST00000560634 KIAA1211Q6ZU35 1233 aa16.72■□□□□ 0.27
CSPG4P11-201ENST00000560634 KANK1Q14678 1352 aa16.72■□□□□ 0.27
CSPG4P11-201ENST00000560634 CALD1Q05682 793 aaKnown RBP16.71■□□□□ 0.27
CSPG4P11-201ENST00000560634 RWDD1Q9H446 243 aaPredicted RBP16.71■□□□□ 0.27
CSPG4P11-201ENST00000560634 HTATSF1O43719 755 aaKnown RBP16.71■□□□□ 0.27
CSPG4P11-201ENST00000560634 CHMP4AQ9BY43 222 aa16.71■□□□□ 0.27
CSPG4P11-201ENST00000560634 SYAP1Q96A49 352 aaPredicted RBP16.7■□□□□ 0.26
CSPG4P11-201ENST00000560634 KTN1Q86UP2 1357 aaKnown RBP16.69■□□□□ 0.26
CSPG4P11-201ENST00000560634 RTF1Q92541 710 aaKnown RBP16.69■□□□□ 0.26
CSPG4P11-201ENST00000560634 SRPK2P78362 688 aaKnown RBP16.67■□□□□ 0.26
CSPG4P11-201ENST00000560634 RCAN3Q9UKA8 241 aa16.67■□□□□ 0.26
CSPG4P11-201ENST00000560634 RALBP1Q15311 655 aa16.67■□□□□ 0.26
CSPG4P11-201ENST00000560634 HSPA5P11021 654 aaKnown RBP16.66■□□□□ 0.26
CSPG4P11-201ENST00000560634 GNL2Q13823 731 aaKnown RBP16.66■□□□□ 0.26
CSPG4P11-201ENST00000560634 SPRYD3Q8NCJ5 442 aa16.65■□□□□ 0.26
CSPG4P11-201ENST00000560634 BAZ1BQ9UIG0 1483 aaKnown RBP16.64■□□□□ 0.25
CSPG4P11-201ENST00000560634 SETD5Q9C0A6 1442 aa16.64■□□□□ 0.25
CSPG4P11-201ENST00000560634 PMFBP1Q8TBY8 1022 aa16.63■□□□□ 0.25
CSPG4P11-201ENST00000560634 HDGFL2Q7Z4V5 671 aaPredicted RBP16.63■□□□□ 0.25
CSPG4P11-201ENST00000560634 CCDC34Q96HJ3 373 aa16.62■□□□□ 0.25
CSPG4P11-201ENST00000560634 HDAC5Q9UQL6 1122 aa16.62■□□□□ 0.25
CSPG4P11-201ENST00000560634 TPM4P67936 248 aa16.59■□□□□ 0.25
CSPG4P11-201ENST00000560634 GOLGA6L3A6NEY3 463 aa16.59■□□□□ 0.25
CSPG4P11-201ENST00000560634 SLKQ9H2G2 1235 aaPredicted RBP16.58■□□□□ 0.25
CSPG4P11-201ENST00000560634 U2AF1L5P0DN76 240 aaPredicted RBP16.58■□□□□ 0.24
CSPG4P11-201ENST00000560634 U2AF1Q01081 240 aaKnown RBP eCLIP16.58■□□□□ 0.24
CSPG4P11-201ENST00000560634 PDE3BQ13370 1112 aa16.57■□□□□ 0.24
CSPG4P11-201ENST00000560634 CSPP1Q1MSJ5 1256 aa16.57■□□□□ 0.24
CSPG4P11-201ENST00000560634 ITPRIPQ8IWB1 547 aa16.57■□□□□ 0.24
CSPG4P11-201ENST00000560634 IPO9Q96P70 1041 aaKnown RBP16.57■□□□□ 0.24
CSPG4P11-201ENST00000560634 PKD2Q13563 968 aa16.56■□□□□ 0.24
CSPG4P11-201ENST00000560634 HMMRO75330 724 aa16.56■□□□□ 0.24
CSPG4P11-201ENST00000560634 GZF1Q9H116 711 aaPredicted RBP16.56■□□□□ 0.24
CSPG4P11-201ENST00000560634 APBB1O00213 710 aa16.56■□□□□ 0.24
CSPG4P11-201ENST00000560634 BAZ1AQ9NRL2 1556 aaPredicted RBP16.55■□□□□ 0.24
CSPG4P11-201ENST00000560634 CARMIL1Q5VZK9 1371 aa16.54■□□□□ 0.24
CSPG4P11-201ENST00000560634 CLSTN1O94985 981 aa16.53■□□□□ 0.24
CSPG4P11-201ENST00000560634 SOX12O15370 315 aa16.53■□□□□ 0.24
CSPG4P11-201ENST00000560634 STK31Q9BXU1 1019 aa16.53■□□□□ 0.24
CSPG4P11-201ENST00000560634 USP35Q9P2H5 1018 aa16.52■□□□□ 0.24
CSPG4P11-201ENST00000560634 GPATCH3Q96I76 525 aa16.52■□□□□ 0.24
CSPG4P11-201ENST00000560634 ISY1Q9ULR0 285 aaKnown RBP16.52■□□□□ 0.23
CSPG4P11-201ENST00000560634 TNNT3P45378 269 aaPredicted RBP16.51■□□□□ 0.23
CSPG4P11-201ENST00000560634 ARHGAP35Q9NRY4 1499 aa16.51■□□□□ 0.23
CSPG4P11-201ENST00000560634 NOC3LQ8WTT2 800 aaKnown RBP16.5■□□□□ 0.23
CSPG4P11-201ENST00000560634 VPS8Q8N3P4 1428 aa16.5■□□□□ 0.23
CSPG4P11-201ENST00000560634 SAFB2Q14151 953 aaKnown RBP eCLIP16.5■□□□□ 0.23
CSPG4P11-201ENST00000560634 PHF14O94880 888 aa16.49■□□□□ 0.23
CSPG4P11-201ENST00000560634 MFAP1P55081 439 aaKnown RBP16.49■□□□□ 0.23
CSPG4P11-201ENST00000560634 SPAG9O60271 1321 aaKnown RBP16.49■□□□□ 0.23
CSPG4P11-201ENST00000560634 NLRP13Q86W25 1043 aa16.49■□□□□ 0.23
CSPG4P11-201ENST00000560634 GOLGA6L1Q8N7Z2 621 aa16.49■□□□□ 0.23
CSPG4P11-201ENST00000560634 SMC4Q9NTJ3 1288 aa16.48■□□□□ 0.23
CSPG4P11-201ENST00000560634 ROCK2O75116 1388 aaKnown RBP16.48■□□□□ 0.23
CSPG4P11-201ENST00000560634 CECR2Q9BXF3 1484 aa16.48■□□□□ 0.23
CSPG4P11-201ENST00000560634 KIF3AQ9Y496 699 aa16.48■□□□□ 0.23
CSPG4P11-201ENST00000560634 TSHZ2Q9NRE2 1034 aa16.48■□□□□ 0.23
CSPG4P11-201ENST00000560634 EIF3AQ14152 1382 aaKnown RBP16.47■□□□□ 0.23
CSPG4P11-201ENST00000560634 MPHOSPH9Q99550 1183 aa16.47■□□□□ 0.23
CSPG4P11-201ENST00000560634 PHLDB1Q86UU1 1377 aa16.46■□□□□ 0.23
CSPG4P11-201ENST00000560634 ST18O60284 1047 aa16.46■□□□□ 0.23
CSPG4P11-201ENST00000560634 LMOD3Q0VAK6 560 aa16.46■□□□□ 0.23
CSPG4P11-201ENST00000560634 GORABQ5T7V8 394 aa16.45■□□□□ 0.22
CSPG4P11-201ENST00000560634 STK26Q9P289 416 aa16.45■□□□□ 0.22
CSPG4P11-201ENST00000560634 TERF2IPQ9NYB0 399 aa16.44■□□□□ 0.22
CSPG4P11-201ENST00000560634 CENPJQ9HC77 1338 aaPredicted RBP16.44■□□□□ 0.22
CSPG4P11-201ENST00000560634 DDX11L8A8MPP1 907 aa16.44■□□□□ 0.22
CSPG4P11-201ENST00000560634 TRIM6-TRIM34B2RNG4 842 aa16.44■□□□□ 0.22
CSPG4P11-201ENST00000560634 GGT6Q6P531 493 aa16.44■□□□□ 0.22
CSPG4P11-201ENST00000560634 CHMP4CQ96CF2 233 aa16.43■□□□□ 0.22
CSPG4P11-201ENST00000560634 NUP155O75694 1391 aa16.42■□□□□ 0.22
CSPG4P11-201ENST00000560634 CUX2O14529 1486 aa16.42■□□□□ 0.22
CSPG4P11-201ENST00000560634 ANKRD30AQ9BXX3 1397 aa16.42■□□□□ 0.22
CSPG4P11-201ENST00000560634 RAB3GAP2Q9H2M9 1393 aa16.41■□□□□ 0.22
CSPG4P11-201ENST00000560634 TPM3P06753 285 aa16.41■□□□□ 0.22
CSPG4P11-201ENST00000560634 AMER1Q5JTC6 1135 aaPredicted RBP16.41■□□□□ 0.22
CSPG4P11-201ENST00000560634 HSP90B1P14625 803 aaKnown RBP16.41■□□□□ 0.22
CSPG4P11-201ENST00000560634 EFCAB2Q5VUJ9 269 aa16.4■□□□□ 0.22
CSPG4P11-201ENST00000560634 MLECQ14165 292 aa16.4■□□□□ 0.22
CSPG4P11-201ENST00000560634 KIF16BQ96L93 1317 aa16.39■□□□□ 0.21
CSPG4P11-201ENST00000560634 FMN1Q68DA7 1419 aa16.39■□□□□ 0.21
CSPG4P11-201ENST00000560634 CSB-PGBD3P0DP91 1061 aa16.39■□□□□ 0.21
CSPG4P11-201ENST00000560634 SKOR2Q2VWA4 1001 aaPredicted RBP16.39■□□□□ 0.21
CSPG4P11-201ENST00000560634 ATP6V1DQ9Y5K8 247 aa16.38■□□□□ 0.21
CSPG4P11-201ENST00000560634 TAF7LQ5H9L4 462 aa16.38■□□□□ 0.21
CSPG4P11-201ENST00000560634 FOXD1Q16676 465 aa16.38■□□□□ 0.21
CSPG4P11-201ENST00000560634 CLUAP1Q96AJ1 413 aa16.37■□□□□ 0.21
CSPG4P11-201ENST00000560634 RSPH6AQ9H0K4 717 aa16.37■□□□□ 0.21
CSPG4P11-201ENST00000560634 CARMIL2Q6F5E8 1435 aa16.37■□□□□ 0.21
CSPG4P11-201ENST00000560634 A0A0U1RQG5 324 aaPredicted RBP16.37■□□□□ 0.21
CSPG4P11-201ENST00000560634 PAK3O75914 559 aaPredicted RBP16.37■□□□□ 0.21
CSPG4P11-201ENST00000560634 CENPQQ7L2Z9 268 aaPredicted RBP16.37■□□□□ 0.21
CSPG4P11-201ENST00000560634 RASSF8Q8NHQ8 419 aa16.37■□□□□ 0.21
CSPG4P11-201ENST00000560634 ARID3AQ99856 593 aa16.37■□□□□ 0.21
CSPG4P11-201ENST00000560634 SF3A1Q15459 793 aaKnown RBP16.36■□□□□ 0.21
CSPG4P11-201ENST00000560634 EIF4G1Q04637 1599 aaKnown RBP16.36■□□□□ 0.21
CSPG4P11-201ENST00000560634 TMX4Q9H1E5 349 aaPredicted RBP16.36■□□□□ 0.21
CSPG4P11-201ENST00000560634 KANK4Q5T7N3 995 aaPredicted RBP16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms