RNA–Protein interactions for RNA: ENST00000559961.1

SNX1-209, Transcript of sorting nexin 1, humanhuman

TSL 3

Gene SNX1, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-209ENST00000559961 HECW2Q9P2P5 1572 aa20.21■□□□□ 0.83
SNX1-209ENST00000559961 PLPPR3Q6T4P5 718 aa20.2■□□□□ 0.82
SNX1-209ENST00000559961 ARHGEF40Q8TER5 1519 aa20.19■□□□□ 0.82
SNX1-209ENST00000559961 ZMYM4Q5VZL5 1548 aa20.17■□□□□ 0.82
SNX1-209ENST00000559961 AFAP1Q8N556 730 aa20.16■□□□□ 0.82
SNX1-209ENST00000559961 RICTORQ6R327 1708 aa20.16■□□□□ 0.82
SNX1-209ENST00000559961 YEATS2Q9ULM3 1422 aa20.15■□□□□ 0.82
SNX1-209ENST00000559961 ZNF518AQ6AHZ1 1483 aa20.15■□□□□ 0.82
SNX1-209ENST00000559961 MYO5CQ9NQX4 1742 aa20.15■□□□□ 0.82
SNX1-209ENST00000559961 ADAMTSL3P82987 1691 aa20.14■□□□□ 0.81
SNX1-209ENST00000559961 ATP10AO60312 1499 aa20.14■□□□□ 0.81
SNX1-209ENST00000559961 FYCO1Q9BQS8 1478 aa20.14■□□□□ 0.81
SNX1-209ENST00000559961 ZNF777Q9ULD5 760 aaPredicted RBP20.14■□□□□ 0.81
SNX1-209ENST00000559961 BCORL1Q5H9F3 1711 aa20.13■□□□□ 0.81
SNX1-209ENST00000559961 ESF1Q9H501 851 aaKnown RBP20.13■□□□□ 0.81
SNX1-209ENST00000559961 C9orf84Q5VXU9 1444 aa20.11■□□□□ 0.81
SNX1-209ENST00000559961 PCF11O94913 1555 aaKnown RBP20.11■□□□□ 0.81
SNX1-209ENST00000559961 MADDQ8WXG6 1647 aa20.09■□□□□ 0.81
SNX1-209ENST00000559961 MTUS2Q5JR59 1369 aa20.08■□□□□ 0.8
SNX1-209ENST00000559961 CFDP1Q9UEE9 299 aaPredicted RBP20.07■□□□□ 0.8
SNX1-209ENST00000559961 ILDR1Q86SU0 546 aaPredicted RBP20.06■□□□□ 0.8
SNX1-209ENST00000559961 CCNB3Q8WWL7 1395 aa20.05■□□□□ 0.8
SNX1-209ENST00000559961 RIMS1Q86UR5 1692 aaKnown RBP20.02■□□□□ 0.8
SNX1-209ENST00000559961 MLH3Q9UHC1 1453 aa20■□□□□ 0.79
SNX1-209ENST00000559961 SPAG9O60271 1321 aaKnown RBP20■□□□□ 0.79
SNX1-209ENST00000559961 HNRNPMP52272 730 aaKnown RBP eCLIP19.99■□□□□ 0.79
SNX1-209ENST00000559961 TRAPPC8Q9Y2L5 1435 aa19.99■□□□□ 0.79
SNX1-209ENST00000559961 LRRIQ1Q96JM4 1722 aa19.99■□□□□ 0.79
SNX1-209ENST00000559961 CEP162Q5TB80 1403 aa19.98■□□□□ 0.79
SNX1-209ENST00000559961 KDM5CP41229 1560 aa19.98■□□□□ 0.79
SNX1-209ENST00000559961 PREX2Q70Z35 1606 aa19.98■□□□□ 0.79
SNX1-209ENST00000559961 HSPA2P54652 639 aa19.97■□□□□ 0.79
SNX1-209ENST00000559961 PLEKHH2Q8IVE3 1493 aa19.97■□□□□ 0.79
SNX1-209ENST00000559961 ABCC1P33527 1531 aa19.96■□□□□ 0.79
SNX1-209ENST00000559961 GPATCH8Q9UKJ3 1502 aaKnown RBP19.96■□□□□ 0.79
SNX1-209ENST00000559961 CDC42BPBQ9Y5S2 1711 aa19.96■□□□□ 0.79
SNX1-209ENST00000559961 CEBPAP49715 358 aaPredicted RBP19.95■□□□□ 0.78
SNX1-209ENST00000559961 LMTK3Q96Q04 1460 aa19.94■□□□□ 0.78
SNX1-209ENST00000559961 ARHGEF12Q9NZN5 1544 aa19.93■□□□□ 0.78
SNX1-209ENST00000559961 KIAA1107Q9UPP5 1409 aa19.93■□□□□ 0.78
SNX1-209ENST00000559961 FER1L4A9Z1Z3 1794 aa19.91■□□□□ 0.78
SNX1-209ENST00000559961 DMRT2Q9Y5R5 561 aa19.9■□□□□ 0.78
SNX1-209ENST00000559961 DIP2CQ9Y2E4 1556 aa19.9■□□□□ 0.78
SNX1-209ENST00000559961 FBXO41Q8TF61 875 aa19.89■□□□□ 0.77
SNX1-209ENST00000559961 REREQ9P2R6 1566 aa19.88■□□□□ 0.77
SNX1-209ENST00000559961 LOC105371045A0A1W2PR82 267 aa19.88■□□□□ 0.77
SNX1-209ENST00000559961 CDC42BPAQ5VT25 1732 aa19.88■□□□□ 0.77
SNX1-209ENST00000559961 ITSN2Q9NZM3 1697 aa19.87■□□□□ 0.77
SNX1-209ENST00000559961 CNTLNQ9NXG0 1405 aa19.87■□□□□ 0.77
SNX1-209ENST00000559961 AGLP35573 1532 aa19.86■□□□□ 0.77
SNX1-209ENST00000559961 EHBP1L1Q8N3D4 1523 aa19.86■□□□□ 0.77
SNX1-209ENST00000559961 SYCP2Q9BX26 1530 aa19.86■□□□□ 0.77
SNX1-209ENST00000559961 UHRF1BP1Q6BDS2 1440 aa19.86■□□□□ 0.77
SNX1-209ENST00000559961 SIGLEC1Q9BZZ2 1709 aa19.86■□□□□ 0.77
SNX1-209ENST00000559961 RSPH4AQ5TD94 716 aa19.86■□□□□ 0.77
SNX1-209ENST00000559961 SAMD9LQ8IVG5 1584 aa19.85■□□□□ 0.77
SNX1-209ENST00000559961 ABCA6Q8N139 1617 aa19.84■□□□□ 0.77
SNX1-209ENST00000559961 APLP2Q06481 763 aa19.84■□□□□ 0.77
SNX1-209ENST00000559961 GGT6Q6P531 493 aa19.84■□□□□ 0.77
SNX1-209ENST00000559961 ZNF644Q9H582 1327 aaPredicted RBP19.82■□□□□ 0.76
SNX1-209ENST00000559961 PPP6R1Q9UPN7 881 aa19.82■□□□□ 0.76
SNX1-209ENST00000559961 TSPY4P0CV99 314 aa19.81■□□□□ 0.76
SNX1-209ENST00000559961 TSPY10P0CW01 314 aa19.81■□□□□ 0.76
SNX1-209ENST00000559961 ATP7AQ04656 1500 aa19.79■□□□□ 0.76
SNX1-209ENST00000559961 KIDINS220Q9ULH0 1771 aa19.79■□□□□ 0.76
SNX1-209ENST00000559961 A2MP01023 1474 aa19.79■□□□□ 0.76
SNX1-209ENST00000559961 VPS8Q8N3P4 1428 aa19.77■□□□□ 0.76
SNX1-209ENST00000559961 PREX1Q8TCU6 1659 aa19.76■□□□□ 0.75
SNX1-209ENST00000559961 NCOA2Q15596 1464 aa19.76■□□□□ 0.75
SNX1-209ENST00000559961 ZMYM3Q14202 1370 aa19.76■□□□□ 0.75
SNX1-209ENST00000559961 RTEL1-TNFRSF6BF6WH68 1400 aa19.76■□□□□ 0.75
SNX1-209ENST00000559961 TIAM1Q13009 1591 aa19.74■□□□□ 0.75
SNX1-209ENST00000559961 CERKQ8TCT0 537 aa19.74■□□□□ 0.75
SNX1-209ENST00000559961 SETD1BQ9UPS6 1966 aaKnown RBP19.73■□□□□ 0.75
SNX1-209ENST00000559961 SUPT6HQ7KZ85 1726 aaKnown RBP19.73■□□□□ 0.75
SNX1-209ENST00000559961 KIF3BO15066 747 aa19.72■□□□□ 0.75
SNX1-209ENST00000559961 DHX29Q7Z478 1369 aaKnown RBP19.71■□□□□ 0.75
SNX1-209ENST00000559961 NPATQ14207 1427 aa19.71■□□□□ 0.75
SNX1-209ENST00000559961 MBD5Q9P267 1494 aa19.71■□□□□ 0.75
SNX1-209ENST00000559961 CCDC141Q6ZP82 1450 aa19.7■□□□□ 0.74
SNX1-209ENST00000559961 INO80Q9ULG1 1556 aaPredicted RBP19.69■□□□□ 0.74
SNX1-209ENST00000559961 LRRC9Q6ZRR7 1453 aa19.68■□□□□ 0.74
SNX1-209ENST00000559961 CAMSAP2Q08AD1 1489 aa19.67■□□□□ 0.74
SNX1-209ENST00000559961 C3P01024 1663 aa19.67■□□□□ 0.74
SNX1-209ENST00000559961 WASHC2CQ9Y4E1 1318 aa19.67■□□□□ 0.74
SNX1-209ENST00000559961 ADGBQ8N7X0 1667 aa19.65■□□□□ 0.74
SNX1-209ENST00000559961 KANK4Q5T7N3 995 aaPredicted RBP19.64■□□□□ 0.73
SNX1-209ENST00000559961 PLXNC1O60486 1568 aa19.63■□□□□ 0.73
SNX1-209ENST00000559961 PTPRTO14522 1441 aa19.63■□□□□ 0.73
SNX1-209ENST00000559961 MAP3K1Q13233 1512 aa19.62■□□□□ 0.73
SNX1-209ENST00000559961 PKD2Q13563 968 aa19.62■□□□□ 0.73
SNX1-209ENST00000559961 MROH2AA6NES4 1674 aa19.62■□□□□ 0.73
SNX1-209ENST00000559961 MIA2Q96PC5 1412 aa19.59■□□□□ 0.73
SNX1-209ENST00000559961 PTPRKQ15262 1439 aa19.59■□□□□ 0.73
SNX1-209ENST00000559961 CLTCQ00610 1675 aaKnown RBP19.58■□□□□ 0.72
SNX1-209ENST00000559961 NCOA1Q15788 1441 aa19.58■□□□□ 0.72
SNX1-209ENST00000559961 MYOM3Q5VTT5 1437 aa19.58■□□□□ 0.72
SNX1-209ENST00000559961 NCKAP5LQ9HCH0 1330 aa19.57■□□□□ 0.72
SNX1-209ENST00000559961 ARHGEF5Q12774 1597 aa19.57■□□□□ 0.72
SNX1-209ENST00000559961 TNRQ92752 1358 aa19.55■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms