RNA–Protein interactions for RNA: ENST00000558752.1

RPL28-206, Transcript of ribosomal protein L28, humanhuman

TSL 3 BASIC

Gene RPL28, Length 671 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPL28-206ENST00000558752 EFCAB2Q5VUJ9 269 aa25.03■■□□□ 1.6
RPL28-206ENST00000558752 HECW1Q76N89 1606 aa25.03■■□□□ 1.6
RPL28-206ENST00000558752 RIMS1Q86UR5 1692 aaKnown RBP25.03■■□□□ 1.6
RPL28-206ENST00000558752 SCAPERQ9BY12 1400 aa25.03■■□□□ 1.6
RPL28-206ENST00000558752 YEATS2Q9ULM3 1422 aa24.98■■□□□ 1.59
RPL28-206ENST00000558752 EHMT2Q96KQ7 1210 aa24.98■■□□□ 1.59
RPL28-206ENST00000558752 MLECQ14165 292 aa24.97■■□□□ 1.59
RPL28-206ENST00000558752 SIGLEC1Q9BZZ2 1709 aa24.96■■□□□ 1.59
RPL28-206ENST00000558752 CERKQ8TCT0 537 aa24.95■■□□□ 1.58
RPL28-206ENST00000558752 MYO5CQ9NQX4 1742 aa24.95■■□□□ 1.58
RPL28-206ENST00000558752 CLIP1P30622 1438 aa24.95■■□□□ 1.58
RPL28-206ENST00000558752 ARHGAP35Q9NRY4 1499 aa24.94■■□□□ 1.58
RPL28-206ENST00000558752 ATP10AO60312 1499 aa24.93■■□□□ 1.58
RPL28-206ENST00000558752 KIF14Q15058 1648 aa24.91■■□□□ 1.58
RPL28-206ENST00000558752 C9orf84Q5VXU9 1444 aa24.91■■□□□ 1.58
RPL28-206ENST00000558752 TROQ12816 1431 aaPredicted RBP24.9■■□□□ 1.58
RPL28-206ENST00000558752 ZNF518AQ6AHZ1 1483 aa24.89■■□□□ 1.57
RPL28-206ENST00000558752 MYT1LQ9UL68 1186 aa24.88■■□□□ 1.57
RPL28-206ENST00000558752 FER1L4A9Z1Z3 1794 aa24.88■■□□□ 1.57
RPL28-206ENST00000558752 ARHGAP5Q13017 1502 aa24.86■■□□□ 1.57
RPL28-206ENST00000558752 ILDR2Q71H61 639 aa24.85■■□□□ 1.57
RPL28-206ENST00000558752 CEBPAP49715 358 aaPredicted RBP24.84■■□□□ 1.57
RPL28-206ENST00000558752 ARHGEF12Q9NZN5 1544 aa24.82■■□□□ 1.56
RPL28-206ENST00000558752 AFAP1Q8N556 730 aa24.8■■□□□ 1.56
RPL28-206ENST00000558752 CCDC18Q5T9S5 1454 aa24.79■■□□□ 1.56
RPL28-206ENST00000558752 KDM5CP41229 1560 aa24.77■■□□□ 1.56
RPL28-206ENST00000558752 ESF1Q9H501 851 aaKnown RBP24.77■■□□□ 1.56
RPL28-206ENST00000558752 DMRT2Q9Y5R5 561 aa24.75■■□□□ 1.55
RPL28-206ENST00000558752 CASKIN1Q8WXD9 1431 aa24.75■■□□□ 1.55
RPL28-206ENST00000558752 PREX1Q8TCU6 1659 aa24.73■■□□□ 1.55
RPL28-206ENST00000558752 MLH3Q9UHC1 1453 aa24.72■■□□□ 1.55
RPL28-206ENST00000558752 DISP3Q9P2K9 1392 aa24.72■■□□□ 1.55
RPL28-206ENST00000558752 REREQ9P2R6 1566 aa24.71■■□□□ 1.55
RPL28-206ENST00000558752 SETD1BQ9UPS6 1966 aaKnown RBP24.7■■□□□ 1.54
RPL28-206ENST00000558752 LRRIQ1Q96JM4 1722 aa24.69■■□□□ 1.54
RPL28-206ENST00000558752 CDC42BPBQ9Y5S2 1711 aa24.69■■□□□ 1.54
RPL28-206ENST00000558752 UHRF1BP1Q6BDS2 1440 aa24.69■■□□□ 1.54
RPL28-206ENST00000558752 PREX2Q70Z35 1606 aa24.68■■□□□ 1.54
RPL28-206ENST00000558752 DIP2CQ9Y2E4 1556 aa24.68■■□□□ 1.54
RPL28-206ENST00000558752 ABCC1P33527 1531 aa24.65■■□□□ 1.54
RPL28-206ENST00000558752 AGLP35573 1532 aa24.65■■□□□ 1.54
RPL28-206ENST00000558752 SOCS7O14512 581 aa24.63■■□□□ 1.53
RPL28-206ENST00000558752 FYCO1Q9BQS8 1478 aa24.63■■□□□ 1.53
RPL28-206ENST00000558752 TRAPPC8Q9Y2L5 1435 aa24.62■■□□□ 1.53
RPL28-206ENST00000558752 ABCA6Q8N139 1617 aa24.62■■□□□ 1.53
RPL28-206ENST00000558752 ITSN2Q9NZM3 1697 aa24.62■■□□□ 1.53
RPL28-206ENST00000558752 STRCQ7RTU9 1775 aa24.61■■□□□ 1.53
RPL28-206ENST00000558752 CNTLNQ9NXG0 1405 aa24.61■■□□□ 1.53
RPL28-206ENST00000558752 ZNF777Q9ULD5 760 aaPredicted RBP24.59■■□□□ 1.53
RPL28-206ENST00000558752 CDC42BPAQ5VT25 1732 aa24.57■■□□□ 1.52
RPL28-206ENST00000558752 SPAG9O60271 1321 aaKnown RBP24.55■■□□□ 1.52
RPL28-206ENST00000558752 C3P01024 1663 aa24.54■■□□□ 1.52
RPL28-206ENST00000558752 KIDINS220Q9ULH0 1771 aa24.54■■□□□ 1.52
RPL28-206ENST00000558752 PLEKHH2Q8IVE3 1493 aa24.52■■□□□ 1.52
RPL28-206ENST00000558752 PTPRTO14522 1441 aa24.52■■□□□ 1.52
RPL28-206ENST00000558752 CFDP1Q9UEE9 299 aaPredicted RBP24.51■■□□□ 1.51
RPL28-206ENST00000558752 GPATCH8Q9UKJ3 1502 aaKnown RBP24.51■■□□□ 1.51
RPL28-206ENST00000558752 SAMD9LQ8IVG5 1584 aa24.5■■□□□ 1.51
RPL28-206ENST00000558752 KIAA1107Q9UPP5 1409 aa24.5■■□□□ 1.51
RPL28-206ENST00000558752 CCNB3Q8WWL7 1395 aa24.49■■□□□ 1.51
RPL28-206ENST00000558752 HNRNPMP52272 730 aaKnown RBP eCLIP24.48■■□□□ 1.515e-6■■■■□ 20.3
RPL28-206ENST00000558752 SYCP2Q9BX26 1530 aa24.47■■□□□ 1.51
RPL28-206ENST00000558752 LTBP4Q8N2S1 1624 aa24.46■■□□□ 1.51
RPL28-206ENST00000558752 NPATQ14207 1427 aa24.46■■□□□ 1.51
RPL28-206ENST00000558752 MTUS2Q5JR59 1369 aa24.46■■□□□ 1.51
RPL28-206ENST00000558752 MROH2AA6NES4 1674 aa24.43■■□□□ 1.5
RPL28-206ENST00000558752 ZMYM3Q14202 1370 aa24.43■■□□□ 1.5
RPL28-206ENST00000558752 SPATA31D1Q6ZQQ2 1576 aa24.42■■□□□ 1.5
RPL28-206ENST00000558752 ATP7AQ04656 1500 aa24.42■■□□□ 1.5
RPL28-206ENST00000558752 PPP6R1Q9UPN7 881 aa24.41■■□□□ 1.5
RPL28-206ENST00000558752 A2MP01023 1474 aa24.39■■□□□ 1.5
RPL28-206ENST00000558752 SUPT6HQ7KZ85 1726 aaKnown RBP24.39■■□□□ 1.5
RPL28-206ENST00000558752 NCOA1Q15788 1441 aa24.39■■□□□ 1.5
RPL28-206ENST00000558752 GGT6Q6P531 493 aa24.36■■□□□ 1.49
RPL28-206ENST00000558752 INO80Q9ULG1 1556 aaPredicted RBP24.35■■□□□ 1.49
RPL28-206ENST00000558752 NCKAP5LQ9HCH0 1330 aa24.35■■□□□ 1.49
RPL28-206ENST00000558752 IQSEC2Q5JU85 1478 aa24.34■■□□□ 1.49
RPL28-206ENST00000558752 PLXNC1O60486 1568 aa24.33■■□□□ 1.49
RPL28-206ENST00000558752 CAMSAP1Q5T5Y3 1602 aa24.33■■□□□ 1.49
RPL28-206ENST00000558752 EHBP1L1Q8N3D4 1523 aa24.32■■□□□ 1.48
RPL28-206ENST00000558752 PKD2Q13563 968 aa24.32■■□□□ 1.48
RPL28-206ENST00000558752 ZNF335Q9H4Z2 1342 aaPredicted RBP24.32■■□□□ 1.48
RPL28-206ENST00000558752 CLTCQ00610 1675 aaKnown RBP24.31■■□□□ 1.48
RPL28-206ENST00000558752 ADGBQ8N7X0 1667 aa24.31■■□□□ 1.48
RPL28-206ENST00000558752 RTEL1-TNFRSF6BF6WH68 1400 aa24.29■■□□□ 1.48
RPL28-206ENST00000558752 RSPH4AQ5TD94 716 aa24.28■■□□□ 1.48
RPL28-206ENST00000558752 CEP162Q5TB80 1403 aa24.27■■□□□ 1.48
RPL28-206ENST00000558752 LOC105371045A0A1W2PR82 267 aa24.27■■□□□ 1.48
RPL28-206ENST00000558752 PTPRKQ15262 1439 aa24.27■■□□□ 1.48
RPL28-206ENST00000558752 PLA2R1Q13018 1463 aa24.26■■□□□ 1.47
RPL28-206ENST00000558752 TIAM1Q13009 1591 aa24.26■■□□□ 1.47
RPL28-206ENST00000558752 UBAP1LF5GYI3 381 aa24.25■■□□□ 1.47
RPL28-206ENST00000558752 ZNF644Q9H582 1327 aaPredicted RBP24.25■■□□□ 1.47
RPL28-206ENST00000558752 DHX29Q7Z478 1369 aaKnown RBP24.24■■□□□ 1.47
RPL28-206ENST00000558752 MBD5Q9P267 1494 aa24.24■■□□□ 1.47
RPL28-206ENST00000558752 MYO3AQ8NEV4 1616 aa24.24■■□□□ 1.47
RPL28-206ENST00000558752 ZNF142P52746 1687 aaPredicted RBP24.24■■□□□ 1.47
RPL28-206ENST00000558752 CEP170BQ9Y4F5 1589 aaPredicted RBP24.23■■□□□ 1.47
RPL28-206ENST00000558752 KIF3BO15066 747 aa24.18■■□□□ 1.46
RPL28-206ENST00000558752 CCDC141Q6ZP82 1450 aa24.18■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms