RNA–Protein interactions for RNA: ENST00000558080.1

SPG11-205, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 1 (best)

Gene SPG11, Length 759 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-205ENST00000558080 ADCY10Q96PN6 1610 aa12.84□□□□□ -0.35
SPG11-205ENST00000558080 TTBK1Q5TCY1 1321 aaPredicted RBP12.84□□□□□ -0.35
SPG11-205ENST00000558080 POTEB2H3BUK9 544 aa12.83□□□□□ -0.36
SPG11-205ENST00000558080 MIER1Q8N108 512 aa12.83□□□□□ -0.36
SPG11-205ENST00000558080 RAPGEF2Q9Y4G8 1499 aa12.83□□□□□ -0.36
SPG11-205ENST00000558080 CTTNBP2Q8WZ74 1663 aa12.82□□□□□ -0.36
SPG11-205ENST00000558080 ATMINO43313 823 aaPredicted RBP12.81□□□□□ -0.36
SPG11-205ENST00000558080 OTUD5Q96G74 571 aa12.81□□□□□ -0.36
SPG11-205ENST00000558080 CARMIL2Q6F5E8 1435 aa12.79□□□□□ -0.36
SPG11-205ENST00000558080 PTPRGP23470 1445 aa12.79□□□□□ -0.36
SPG11-205ENST00000558080 TSPOAP1O95153 1857 aa12.78□□□□□ -0.36
SPG11-205ENST00000558080 KIF12Q96FN5 646 aa12.78□□□□□ -0.36
SPG11-205ENST00000558080 TNIKQ9UKE5 1360 aa12.77□□□□□ -0.37
SPG11-205ENST00000558080 RASEFQ8IZ41 740 aa12.76□□□□□ -0.37
SPG11-205ENST00000558080 SLC39A7Q92504 469 aa12.76□□□□□ -0.37
SPG11-205ENST00000558080 METRNQ9UJH8 293 aa12.76□□□□□ -0.37
SPG11-205ENST00000558080 DISP1Q96F81 1524 aa12.76□□□□□ -0.37
SPG11-205ENST00000558080 MAPKBP1O60336 1514 aa12.75□□□□□ -0.37
SPG11-205ENST00000558080 C7P10643 843 aa12.75□□□□□ -0.37
SPG11-205ENST00000558080 UGGT2Q9NYU1 1516 aa12.74□□□□□ -0.37
SPG11-205ENST00000558080 FAM69CQ0P6D2 419 aa12.74□□□□□ -0.37
SPG11-205ENST00000558080 DIP2BQ9P265 1576 aa12.73□□□□□ -0.37
SPG11-205ENST00000558080 ABCC10Q5T3U5 1492 aa12.73□□□□□ -0.37
SPG11-205ENST00000558080 KIAA0556O60303 1618 aa12.73□□□□□ -0.37
SPG11-205ENST00000558080 PLCD3Q8N3E9 789 aa12.71□□□□□ -0.37
SPG11-205ENST00000558080 PRXQ9BXM0 1461 aa12.71□□□□□ -0.38
SPG11-205ENST00000558080 ABCC2Q92887 1545 aa12.69□□□□□ -0.38
SPG11-205ENST00000558080 MAP3K13O43283 966 aa12.69□□□□□ -0.38
SPG11-205ENST00000558080 ATN1P54259 1190 aaPredicted RBP12.69□□□□□ -0.38
SPG11-205ENST00000558080 UACAQ9BZF9 1416 aa12.69□□□□□ -0.38
SPG11-205ENST00000558080 ZBTB47Q9UFB7 747 aaPredicted RBP12.68□□□□□ -0.38
SPG11-205ENST00000558080 UHRF1BP1LA0JNW5 1464 aa12.67□□□□□ -0.38
SPG11-205ENST00000558080 ZCCHC11Q5TAX3 1644 aaKnown RBP12.67□□□□□ -0.38
SPG11-205ENST00000558080 FKBP8Q14318 412 aa12.66□□□□□ -0.38
SPG11-205ENST00000558080 BMP2KQ9NSY1 1161 aaPredicted RBP12.66□□□□□ -0.38
SPG11-205ENST00000558080 GOLGA3Q08378 1498 aa12.65□□□□□ -0.38
SPG11-205ENST00000558080 TIE1P35590 1138 aa12.65□□□□□ -0.38
SPG11-205ENST00000558080 FAM9AQ8IZU1 332 aaPredicted RBP12.65□□□□□ -0.38
SPG11-205ENST00000558080 TRPC6Q9Y210 931 aa12.65□□□□□ -0.38
SPG11-205ENST00000558080 ASXL2Q76L83 1435 aa12.64□□□□□ -0.39
SPG11-205ENST00000558080 POTEJP0CG39 1038 aa12.64□□□□□ -0.39
SPG11-205ENST00000558080 NUBP1P53384 320 aa12.63□□□□□ -0.39
SPG11-205ENST00000558080 PLB1Q6P1J6 1458 aa12.63□□□□□ -0.39
SPG11-205ENST00000558080 KDM5BQ9UGL1 1544 aa12.62□□□□□ -0.39
SPG11-205ENST00000558080 PPRC1Q5VV67 1664 aaKnown RBP12.61□□□□□ -0.39
SPG11-205ENST00000558080 P3H3Q8IVL6 736 aa12.61□□□□□ -0.39
SPG11-205ENST00000558080 SGIP1Q9BQI5 828 aa12.61□□□□□ -0.39
SPG11-205ENST00000558080 KDM6BO15054 1643 aa12.61□□□□□ -0.39
SPG11-205ENST00000558080 EEA1Q15075 1411 aa12.61□□□□□ -0.39
SPG11-205ENST00000558080 ABCA8O94911 1581 aa12.6□□□□□ -0.39
SPG11-205ENST00000558080 GLI2P10070 1586 aa12.6□□□□□ -0.39
SPG11-205ENST00000558080 MAMSTRQ6ZN01 415 aa12.6□□□□□ -0.39
SPG11-205ENST00000558080 RANGAP1P46060 587 aaPredicted RBP12.58□□□□□ -0.4
SPG11-205ENST00000558080 MAP3K4Q9Y6R4 1608 aa12.57□□□□□ -0.4
SPG11-205ENST00000558080 EPRSP07814 1512 aaKnown RBP12.57□□□□□ -0.4
SPG11-205ENST00000558080 SAMD9Q5K651 1589 aa12.56□□□□□ -0.4
SPG11-205ENST00000558080 POTEFA5A3E0 1075 aa12.56□□□□□ -0.4
SPG11-205ENST00000558080 TTLL13PA6NNM8 815 aa12.56□□□□□ -0.4
SPG11-205ENST00000558080 KIF21BO75037 1637 aa12.55□□□□□ -0.4
SPG11-205ENST00000558080 ARID3CA6NKF2 412 aa12.54□□□□□ -0.4
SPG11-205ENST00000558080 FAM212AQ96EL1 285 aa12.54□□□□□ -0.4
SPG11-205ENST00000558080 PCDHB13Q9Y5F0 798 aa12.54□□□□□ -0.4
SPG11-205ENST00000558080 WDR7Q9Y4E6 1490 aa12.53□□□□□ -0.4
SPG11-205ENST00000558080 KCNH8Q96L42 1107 aa12.53□□□□□ -0.4
SPG11-205ENST00000558080 RAPGEF6Q8TEU7 1601 aa12.52□□□□□ -0.4
SPG11-205ENST00000558080 CFAP43Q8NDM7 1665 aa12.51□□□□□ -0.41
SPG11-205ENST00000558080 SCUBE2Q9NQ36 999 aa12.51□□□□□ -0.41
SPG11-205ENST00000558080 POTEMA6NI47 508 aa12.49□□□□□ -0.41
SPG11-205ENST00000558080 ATP10BO94823 1461 aa12.48□□□□□ -0.41
SPG11-205ENST00000558080 TEX14Q8IWB6 1497 aa12.48□□□□□ -0.41
SPG11-205ENST00000558080 FHOD3Q2V2M9 1422 aa12.48□□□□□ -0.41
SPG11-205ENST00000558080 IER5LQ5T953 404 aa12.48□□□□□ -0.41
SPG11-205ENST00000558080 IFNL1Q8IU54 200 aa12.48□□□□□ -0.41
SPG11-205ENST00000558080 FBXO3Q9UK99 471 aa12.48□□□□□ -0.41
SPG11-205ENST00000558080 TRIM35Q9UPQ4 493 aa12.47□□□□□ -0.41
SPG11-205ENST00000558080 CD109Q6YHK3 1445 aa12.46□□□□□ -0.41
SPG11-205ENST00000558080 UBTFP17480 764 aaKnown RBP12.46□□□□□ -0.41
SPG11-205ENST00000558080 COLQQ9Y215 455 aaPredicted RBP12.46□□□□□ -0.41
SPG11-205ENST00000558080 COL17A1Q9UMD9 1497 aaPredicted RBP12.46□□□□□ -0.42
SPG11-205ENST00000558080 POTEGQ6S5H5 508 aa12.45□□□□□ -0.42
SPG11-205ENST00000558080 EFCAB5A4FU69 1503 aa12.44□□□□□ -0.42
SPG11-205ENST00000558080 SEC24BO95487 1268 aa12.44□□□□□ -0.42
SPG11-205ENST00000558080 PLSCR2Q9NRY7 297 aa12.43□□□□□ -0.42
SPG11-205ENST00000558080 MAGI3Q5TCQ9 1506 aa12.42□□□□□ -0.42
SPG11-205ENST00000558080 NUP153P49790 1475 aaKnown RBP12.42□□□□□ -0.42
SPG11-205ENST00000558080 ABCA9Q8IUA7 1624 aa12.42□□□□□ -0.42
SPG11-205ENST00000558080 KDM4FA0A1W2PPD8 638 aa12.39□□□□□ -0.43
SPG11-205ENST00000558080 LCE2DQ5TA82 110 aaPredicted RBP12.39□□□□□ -0.43
SPG11-205ENST00000558080 TMEM106CQ9BVX2 250 aa12.39□□□□□ -0.43
SPG11-205ENST00000558080 DCAF8Q5TAQ9 597 aa12.37□□□□□ -0.43
SPG11-205ENST00000558080 ARHGAP35Q9NRY4 1499 aa12.36□□□□□ -0.43
SPG11-205ENST00000558080 PLEKHD1A6NEE1 506 aa12.36□□□□□ -0.43
SPG11-205ENST00000558080 ATP1B4Q9UN42 357 aaPredicted RBP12.36□□□□□ -0.43
SPG11-205ENST00000558080 CDK13Q14004 1512 aaKnown RBP12.36□□□□□ -0.43
SPG11-205ENST00000558080 LRRIQ1Q96JM4 1722 aa12.35□□□□□ -0.43
SPG11-205ENST00000558080 PCDH10Q9P2E7 1040 aa12.34□□□□□ -0.43
SPG11-205ENST00000558080 ADGRL1O94910 1474 aa12.34□□□□□ -0.43
SPG11-205ENST00000558080 HECW1Q76N89 1606 aa12.33□□□□□ -0.43
SPG11-205ENST00000558080 ARAP3Q8WWN8 1544 aa12.33□□□□□ -0.44
SPG11-205ENST00000558080 PYGBP11216 843 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms