RNA–Protein interactions for RNA: ENST00000557539.1

MTHFD1-216, Transcript of methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1, humanhuman

TSL 4

Gene MTHFD1, Length 509 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MTHFD1-216ENST00000557539 ST18O60284 1047 aa9.86□□□□□ -0.83
MTHFD1-216ENST00000557539 MS4A4AQ96JQ5 239 aa9.86□□□□□ -0.83
MTHFD1-216ENST00000557539 BCL11BQ9C0K0 894 aaPredicted RBP9.85□□□□□ -0.83
MTHFD1-216ENST00000557539 SOX12O15370 315 aa9.84□□□□□ -0.83
MTHFD1-216ENST00000557539 TMEM121BQ9BXQ6 578 aaPredicted RBP9.84□□□□□ -0.83
MTHFD1-216ENST00000557539 PHF8Q9UPP1 1060 aa9.84□□□□□ -0.83
MTHFD1-216ENST00000557539 STK24Q9Y6E0 443 aa9.8□□□□□ -0.84
MTHFD1-216ENST00000557539 STK25O00506 426 aa9.78□□□□□ -0.84
MTHFD1-216ENST00000557539 FBXO22Q8NEZ5 403 aa9.78□□□□□ -0.84
MTHFD1-216ENST00000557539 G3V3G9 751 aa9.77□□□□□ -0.85
MTHFD1-216ENST00000557539 SNPHO15079 494 aa9.77□□□□□ -0.85
MTHFD1-216ENST00000557539 MICALL2Q8IY33 904 aa9.77□□□□□ -0.85
MTHFD1-216ENST00000557539 CC2D2AQ9P2K1 1620 aa9.77□□□□□ -0.85
MTHFD1-216ENST00000557539 SOCS7O14512 581 aa9.76□□□□□ -0.85
MTHFD1-216ENST00000557539 NKX1-1Q15270 411 aaPredicted RBP9.76□□□□□ -0.85
MTHFD1-216ENST00000557539 TMEM92Q6UXU6 159 aa9.76□□□□□ -0.85
MTHFD1-216ENST00000557539 MFRPQ9BY79 579 aa9.76□□□□□ -0.85
MTHFD1-216ENST00000557539 NLRP6P59044 892 aa9.74□□□□□ -0.85
MTHFD1-216ENST00000557539 PLSCR2Q9NRY7 297 aa9.74□□□□□ -0.85
MTHFD1-216ENST00000557539 PCDH10Q9P2E7 1040 aa9.74□□□□□ -0.85
MTHFD1-216ENST00000557539 GTPBP6O43824 516 aaPredicted RBP9.73□□□□□ -0.85
MTHFD1-216ENST00000557539 TULP1O00294 542 aaPredicted RBP9.72□□□□□ -0.85
MTHFD1-216ENST00000557539 HOXB3P14651 431 aaPredicted RBP9.72□□□□□ -0.85
MTHFD1-216ENST00000557539 MARVELD3Q96A59 401 aa9.72□□□□□ -0.85
MTHFD1-216ENST00000557539 TIMELESSQ9UNS1 1208 aa9.72□□□□□ -0.85
MTHFD1-216ENST00000557539 LMTK3Q96Q04 1460 aa9.71□□□□□ -0.86
MTHFD1-216ENST00000557539 RB1CC1Q8TDY2 1594 aa9.71□□□□□ -0.86
MTHFD1-216ENST00000557539 CDAN1Q8IWY9 1227 aa9.7□□□□□ -0.86
MTHFD1-216ENST00000557539 GTF3C3Q9Y5Q9 886 aa9.69□□□□□ -0.86
MTHFD1-216ENST00000557539 POTEB3A0JP26 581 aa9.65□□□□□ -0.86
MTHFD1-216ENST00000557539 POTEBQ6S5H4 581 aa9.65□□□□□ -0.86
MTHFD1-216ENST00000557539 PPP1R37O75864 691 aa9.63□□□□□ -0.87
MTHFD1-216ENST00000557539 EMP3P54852 163 aa9.62□□□□□ -0.87
MTHFD1-216ENST00000557539 HOXB1P14653 301 aaPredicted RBP9.6□□□□□ -0.87
MTHFD1-216ENST00000557539 DOK7Q18PE1 504 aa9.59□□□□□ -0.87
MTHFD1-216ENST00000557539 ERCC6Q03468 1493 aa9.59□□□□□ -0.87
MTHFD1-216ENST00000557539 FAM205CA6NFA0 338 aa9.58□□□□□ -0.88
MTHFD1-216ENST00000557539 KIF3CO14782 793 aa9.58□□□□□ -0.88
MTHFD1-216ENST00000557539 ILDR2Q71H61 639 aa9.58□□□□□ -0.88
MTHFD1-216ENST00000557539 ZNF710Q8N1W2 664 aa9.58□□□□□ -0.88
MTHFD1-216ENST00000557539 HS3ST6Q96QI5 342 aa9.58□□□□□ -0.88
MTHFD1-216ENST00000557539 RYDENQ9NUL5 291 aaKnown RBP9.57□□□□□ -0.88
MTHFD1-216ENST00000557539 TMEM132AQ24JP5 1023 aa9.56□□□□□ -0.88
MTHFD1-216ENST00000557539 C2orf72A6NCS6 295 aa9.55□□□□□ -0.88
MTHFD1-216ENST00000557539 GPR153Q6NV75 609 aa9.54□□□□□ -0.88
MTHFD1-216ENST00000557539 ERICH6Q7L0X2 663 aa9.54□□□□□ -0.88
MTHFD1-216ENST00000557539 P3H3Q8IVL6 736 aa9.53□□□□□ -0.88
MTHFD1-216ENST00000557539 KRTAP3-3Q9BYR6 98 aa9.52□□□□□ -0.89
MTHFD1-216ENST00000557539 KRTAP3-2Q9BYR7 98 aa9.52□□□□□ -0.89
MTHFD1-216ENST00000557539 ZSWIM6Q9HCJ5 1215 aa9.52□□□□□ -0.89
MTHFD1-216ENST00000557539 RIMBP2O15034 1052 aa9.51□□□□□ -0.89
MTHFD1-216ENST00000557539 ARSIQ5FYB1 569 aa9.49□□□□□ -0.89
MTHFD1-216ENST00000557539 KHSRPQ92945 711 aaKnown RBP eCLIP9.49□□□□□ -0.89
MTHFD1-216ENST00000557539 SPNS2Q8IVW8 549 aa9.48□□□□□ -0.89
MTHFD1-216ENST00000557539 FBXO41Q8TF61 875 aa9.48□□□□□ -0.89
MTHFD1-216ENST00000557539 WDR70Q9NW82 654 aa9.48□□□□□ -0.89
MTHFD1-216ENST00000557539 ERBB3P21860 1342 aa9.48□□□□□ -0.89
MTHFD1-216ENST00000557539 BICRAQ9NZM4 1560 aa9.46□□□□□ -0.89
MTHFD1-216ENST00000557539 ARXQ96QS3 562 aa9.46□□□□□ -0.9
MTHFD1-216ENST00000557539 VARS2Q5ST30 1063 aaKnown RBP9.45□□□□□ -0.9
MTHFD1-216ENST00000557539 LMOD2Q6P5Q4 547 aa9.45□□□□□ -0.9
MTHFD1-216ENST00000557539 C14orf37Q86TY3 774 aa9.45□□□□□ -0.9
MTHFD1-216ENST00000557539 TMC2Q8TDI7 906 aa9.45□□□□□ -0.9
MTHFD1-216ENST00000557539 KCNV2Q8TDN2 545 aa9.45□□□□□ -0.9
MTHFD1-216ENST00000557539 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.43□□□□□ -0.9
MTHFD1-216ENST00000557539 CADPS2Q86UW7 1296 aa9.43□□□□□ -0.9
MTHFD1-216ENST00000557539 SLC34A2O95436 690 aa9.42□□□□□ -0.9
MTHFD1-216ENST00000557539 MMRN1Q13201 1228 aa9.42□□□□□ -0.9
MTHFD1-216ENST00000557539 UNC13AQ9UPW8 1703 aa9.41□□□□□ -0.9
MTHFD1-216ENST00000557539 GPHNQ9NQX3 736 aaPredicted RBP9.4□□□□□ -0.9
MTHFD1-216ENST00000557539 PCDHGA4Q9Y5G9 962 aa9.4□□□□□ -0.9
MTHFD1-216ENST00000557539 NUDT7P0C024 238 aa9.39□□□□□ -0.91
MTHFD1-216ENST00000557539 ZNF687Q8N1G0 1237 aa9.39□□□□□ -0.91
MTHFD1-216ENST00000557539 ZNF316A6NFI3 1004 aaPredicted RBP9.38□□□□□ -0.91
MTHFD1-216ENST00000557539 FOXK1P85037 733 aa9.38□□□□□ -0.91
MTHFD1-216ENST00000557539 DSG2Q14126 1118 aa9.38□□□□□ -0.91
MTHFD1-216ENST00000557539 EIF4G1Q04637 1599 aaKnown RBP9.37□□□□□ -0.91
MTHFD1-216ENST00000557539 PLPP6Q8IY26 295 aa9.37□□□□□ -0.91
MTHFD1-216ENST00000557539 DISP3Q9P2K9 1392 aa9.37□□□□□ -0.91
MTHFD1-216ENST00000557539 CCDC180Q9P1Z9 1646 aa9.36□□□□□ -0.91
MTHFD1-216ENST00000557539 KDM4FA0A1W2PPD8 638 aa9.35□□□□□ -0.91
MTHFD1-216ENST00000557539 RIMBP3CA6NJZ7 1639 aa9.34□□□□□ -0.91
MTHFD1-216ENST00000557539 RIMBP3BA6NNM3 1639 aa9.34□□□□□ -0.91
MTHFD1-216ENST00000557539 RIMBP3Q9UFD9 1639 aa9.34□□□□□ -0.91
MTHFD1-216ENST00000557539 BRPF1P55201 1214 aaPredicted RBP9.34□□□□□ -0.91
MTHFD1-216ENST00000557539 CRISPLD2Q9H0B8 497 aa9.34□□□□□ -0.91
MTHFD1-216ENST00000557539 LHX6Q9UPM6 363 aa9.34□□□□□ -0.91
MTHFD1-216ENST00000557539 PTCD2Q8WV60 388 aaKnown RBP9.33□□□□□ -0.92
MTHFD1-216ENST00000557539 NCKAP5LQ9HCH0 1330 aa9.32□□□□□ -0.92
MTHFD1-216ENST00000557539 CYB5RLQ6IPT4 315 aa9.32□□□□□ -0.92
MTHFD1-216ENST00000557539 POTEEQ6S8J3 1075 aa9.31□□□□□ -0.92
MTHFD1-216ENST00000557539 HOMEZQ8IX15 550 aa9.3□□□□□ -0.92
MTHFD1-216ENST00000557539 DAXXQ9UER7 740 aaPredicted RBP9.3□□□□□ -0.92
MTHFD1-216ENST00000557539 ZC3H15Q8WU90 426 aaKnown RBP9.29□□□□□ -0.92
MTHFD1-216ENST00000557539 NEUROD2Q15784 382 aa9.28□□□□□ -0.92
MTHFD1-216ENST00000557539 ARHGEF1Q92888 912 aaKnown RBP9.28□□□□□ -0.92
MTHFD1-216ENST00000557539 NACADO15069 1562 aa9.26□□□□□ -0.93
MTHFD1-216ENST00000557539 PPP1R15BQ5SWA1 713 aa9.26□□□□□ -0.93
MTHFD1-216ENST00000557539 OXER1Q8TDS5 423 aa9.26□□□□□ -0.93
MTHFD1-216ENST00000557539 E2F4Q16254 413 aa9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms