RNA–Protein interactions for RNA: ENST00000557470.5

VPS33B-207, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 5

Gene VPS33B, Length 529 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-207ENST00000557470 CFAP43Q8NDM7 1665 aa10.13□□□□□ -0.79
VPS33B-207ENST00000557470 KCNH8Q96L42 1107 aa10.13□□□□□ -0.79
VPS33B-207ENST00000557470 GOLGA3Q08378 1498 aa10.12□□□□□ -0.79
VPS33B-207ENST00000557470 ZNF692Q9BU19 519 aaPredicted RBP10.12□□□□□ -0.79
VPS33B-207ENST00000557470 CTTNBP2Q8WZ74 1663 aa10.12□□□□□ -0.79
VPS33B-207ENST00000557470 PITPNM1O00562 1244 aa10.11□□□□□ -0.79
VPS33B-207ENST00000557470 KIF21BO75037 1637 aa10.11□□□□□ -0.79
VPS33B-207ENST00000557470 SSUH2Q9Y2M2 353 aa10.09□□□□□ -0.79
VPS33B-207ENST00000557470 ARAP3Q8WWN8 1544 aa10.08□□□□□ -0.8
VPS33B-207ENST00000557470 ARID3CA6NKF2 412 aa10.07□□□□□ -0.8
VPS33B-207ENST00000557470 PRXQ9BXM0 1461 aa10.06□□□□□ -0.8
VPS33B-207ENST00000557470 AMER1Q5JTC6 1135 aaPredicted RBP10.05□□□□□ -0.8
VPS33B-207ENST00000557470 RTN4Q9NQC3 1192 aaKnown RBP10.05□□□□□ -0.8
VPS33B-207ENST00000557470 ATP10BO94823 1461 aa10.04□□□□□ -0.8
VPS33B-207ENST00000557470 PTPRMP28827 1452 aa10.04□□□□□ -0.8
VPS33B-207ENST00000557470 ABCA9Q8IUA7 1624 aa10.04□□□□□ -0.8
VPS33B-207ENST00000557470 ADAMTSL3P82987 1691 aa10.03□□□□□ -0.8
VPS33B-207ENST00000557470 P3H3Q8IVL6 736 aa10.03□□□□□ -0.8
VPS33B-207ENST00000557470 FBXO41Q8TF61 875 aa10.03□□□□□ -0.8
VPS33B-207ENST00000557470 RAPGEF3O95398 923 aa10.02□□□□□ -0.81
VPS33B-207ENST00000557470 PIP4P2Q8N4L2 257 aa10.02□□□□□ -0.81
VPS33B-207ENST00000557470 PHLDB1Q86UU1 1377 aa10.01□□□□□ -0.81
VPS33B-207ENST00000557470 FRMPD1Q5SYB0 1578 aa10.01□□□□□ -0.81
VPS33B-207ENST00000557470 NEO1Q92859 1461 aa10□□□□□ -0.81
VPS33B-207ENST00000557470 SAMD9Q5K651 1589 aa9.99□□□□□ -0.81
VPS33B-207ENST00000557470 MADDQ8WXG6 1647 aa9.99□□□□□ -0.81
VPS33B-207ENST00000557470 BCORL1Q5H9F3 1711 aa9.99□□□□□ -0.81
VPS33B-207ENST00000557470 PCF11O94913 1555 aaKnown RBP9.98□□□□□ -0.81
VPS33B-207ENST00000557470 RAPGEF6Q8TEU7 1601 aa9.98□□□□□ -0.81
VPS33B-207ENST00000557470 FXR2P51116 673 aaKnown RBP eCLIP9.98□□□□□ -0.81
VPS33B-207ENST00000557470 FAM9AQ8IZU1 332 aaPredicted RBP9.98□□□□□ -0.81
VPS33B-207ENST00000557470 CLEC11AQ9Y240 323 aa9.98□□□□□ -0.81
VPS33B-207ENST00000557470 ARID4BQ4LE39 1312 aaPredicted RBP9.98□□□□□ -0.81
VPS33B-207ENST00000557470 NUP153P49790 1475 aaKnown RBP9.97□□□□□ -0.81
VPS33B-207ENST00000557470 LMTK3Q96Q04 1460 aa9.97□□□□□ -0.81
VPS33B-207ENST00000557470 SPDYE1Q8NFV5 336 aaPredicted RBP9.96□□□□□ -0.82
VPS33B-207ENST00000557470 ARHGEF40Q8TER5 1519 aa9.96□□□□□ -0.82
VPS33B-207ENST00000557470 RIMS1Q86UR5 1692 aaKnown RBP9.93□□□□□ -0.82
VPS33B-207ENST00000557470 DENND4BO75064 1496 aaPredicted RBP9.93□□□□□ -0.82
VPS33B-207ENST00000557470 FHOD3Q2V2M9 1422 aa9.92□□□□□ -0.82
VPS33B-207ENST00000557470 RICTORQ6R327 1708 aa9.92□□□□□ -0.82
VPS33B-207ENST00000557470 FANCAO15360 1455 aa9.91□□□□□ -0.82
VPS33B-207ENST00000557470 AKNAQ7Z591 1439 aa9.91□□□□□ -0.82
VPS33B-207ENST00000557470 RANGAP1P46060 587 aaPredicted RBP9.91□□□□□ -0.82
VPS33B-207ENST00000557470 HSPA2P54652 639 aa9.91□□□□□ -0.82
VPS33B-207ENST00000557470 ZMYM4Q5VZL5 1548 aa9.9□□□□□ -0.82
VPS33B-207ENST00000557470 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP9.9□□□□□ -0.82
VPS33B-207ENST00000557470 SIGLEC1Q9BZZ2 1709 aa9.9□□□□□ -0.83
VPS33B-207ENST00000557470 YEATS2Q9ULM3 1422 aa9.9□□□□□ -0.83
VPS33B-207ENST00000557470 TTC37Q6PGP7 1564 aa9.89□□□□□ -0.83
VPS33B-207ENST00000557470 ZFYVE16Q7Z3T8 1539 aa9.89□□□□□ -0.83
VPS33B-207ENST00000557470 PLEKHD1A6NEE1 506 aa9.89□□□□□ -0.83
VPS33B-207ENST00000557470 POGZQ7Z3K3 1410 aa9.89□□□□□ -0.83
VPS33B-207ENST00000557470 CFAP74Q9C0B2 1584 aa9.88□□□□□ -0.83
VPS33B-207ENST00000557470 SPDYE4A6NLX3 237 aa9.88□□□□□ -0.83
VPS33B-207ENST00000557470 EFCAB5A4FU69 1503 aa9.87□□□□□ -0.83
VPS33B-207ENST00000557470 MLECQ14165 292 aa9.86□□□□□ -0.83
VPS33B-207ENST00000557470 HECW1Q76N89 1606 aa9.85□□□□□ -0.83
VPS33B-207ENST00000557470 MAGI2Q86UL8 1455 aa9.85□□□□□ -0.83
VPS33B-207ENST00000557470 CDK13Q14004 1512 aaKnown RBP9.85□□□□□ -0.83
VPS33B-207ENST00000557470 EEA1Q15075 1411 aa9.84□□□□□ -0.83
VPS33B-207ENST00000557470 PRKAR2AP13861 404 aaKnown RBP9.84□□□□□ -0.83
VPS33B-207ENST00000557470 CERKQ8TCT0 537 aa9.84□□□□□ -0.83
VPS33B-207ENST00000557470 FER1L4A9Z1Z3 1794 aa9.83□□□□□ -0.84
VPS33B-207ENST00000557470 SCAPERQ9BY12 1400 aa9.83□□□□□ -0.84
VPS33B-207ENST00000557470 PLCH2O75038 1416 aa9.82□□□□□ -0.84
VPS33B-207ENST00000557470 ARHGEF12Q9NZN5 1544 aa9.82□□□□□ -0.84
VPS33B-207ENST00000557470 PRR29P0C7W0 189 aa9.82□□□□□ -0.84
VPS33B-207ENST00000557470 C9orf84Q5VXU9 1444 aa9.82□□□□□ -0.84
VPS33B-207ENST00000557470 ATP10AO60312 1499 aa9.81□□□□□ -0.84
VPS33B-207ENST00000557470 CHADLQ6NUI6 762 aa9.81□□□□□ -0.84
VPS33B-207ENST00000557470 HAX1O00165 279 aa9.79□□□□□ -0.84
VPS33B-207ENST00000557470 CEBPAP49715 358 aaPredicted RBP9.79□□□□□ -0.84
VPS33B-207ENST00000557470 PREX1Q8TCU6 1659 aa9.79□□□□□ -0.84
VPS33B-207ENST00000557470 MYO5CQ9NQX4 1742 aa9.77□□□□□ -0.85
VPS33B-207ENST00000557470 EFCAB2Q5VUJ9 269 aa9.77□□□□□ -0.85
VPS33B-207ENST00000557470 KIF14Q15058 1648 aa9.77□□□□□ -0.85
VPS33B-207ENST00000557470 ZNF518AQ6AHZ1 1483 aa9.77□□□□□ -0.85
VPS33B-207ENST00000557470 KDM5CP41229 1560 aa9.76□□□□□ -0.85
VPS33B-207ENST00000557470 STRCQ7RTU9 1775 aa9.76□□□□□ -0.85
VPS33B-207ENST00000557470 ATP1B4Q9UN42 357 aaPredicted RBP9.76□□□□□ -0.85
VPS33B-207ENST00000557470 FMN1Q68DA7 1419 aa9.75□□□□□ -0.85
VPS33B-207ENST00000557470 UHRF1BP1Q6BDS2 1440 aa9.75□□□□□ -0.85
VPS33B-207ENST00000557470 EVX2Q03828 476 aa9.75□□□□□ -0.85
VPS33B-207ENST00000557470 AFAP1Q8N556 730 aa9.75□□□□□ -0.85
VPS33B-207ENST00000557470 ARHGAP5Q13017 1502 aa9.75□□□□□ -0.85
VPS33B-207ENST00000557470 DISP3Q9P2K9 1392 aa9.75□□□□□ -0.85
VPS33B-207ENST00000557470 ARHGAP35Q9NRY4 1499 aa9.74□□□□□ -0.85
VPS33B-207ENST00000557470 ILDR2Q71H61 639 aa9.74□□□□□ -0.85
VPS33B-207ENST00000557470 DIP2CQ9Y2E4 1556 aa9.74□□□□□ -0.85
VPS33B-207ENST00000557470 TROQ12816 1431 aaPredicted RBP9.73□□□□□ -0.85
VPS33B-207ENST00000557470 CDK11AQ9UQ88 783 aaPredicted RBP9.73□□□□□ -0.85
VPS33B-207ENST00000557470 REREQ9P2R6 1566 aa9.72□□□□□ -0.85
VPS33B-207ENST00000557470 ABCA6Q8N139 1617 aa9.72□□□□□ -0.85
VPS33B-207ENST00000557470 SP7Q8TDD2 431 aaPredicted RBP9.72□□□□□ -0.85
VPS33B-207ENST00000557470 UBTFP17480 764 aaKnown RBP9.71□□□□□ -0.86
VPS33B-207ENST00000557470 MYT1LQ9UL68 1186 aa9.71□□□□□ -0.86
VPS33B-207ENST00000557470 CLIP1P30622 1438 aa9.71□□□□□ -0.86
VPS33B-207ENST00000557470 MLH3Q9UHC1 1453 aa9.71□□□□□ -0.86
VPS33B-207ENST00000557470 C3P01024 1663 aa9.71□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms