RNA–Protein interactions for RNA: ENST00000557084.1

SYNE2-226, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 689 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-226ENST00000557084 LRRIQ1Q96JM4 1722 aa19■□□□□ 0.63
SYNE2-226ENST00000557084 SCAPERQ9BY12 1400 aa18.98■□□□□ 0.63
SYNE2-226ENST00000557084 ARID4BQ4LE39 1312 aaPredicted RBP18.98■□□□□ 0.63
SYNE2-226ENST00000557084 ARHGAP5Q13017 1502 aa18.97■□□□□ 0.63
SYNE2-226ENST00000557084 MTUS2Q5JR59 1369 aa18.96■□□□□ 0.63
SYNE2-226ENST00000557084 MYO5CQ9NQX4 1742 aa18.96■□□□□ 0.63
SYNE2-226ENST00000557084 MYT1LQ9UL68 1186 aa18.93■□□□□ 0.62
SYNE2-226ENST00000557084 FRMPD1Q5SYB0 1578 aa18.93■□□□□ 0.62
SYNE2-226ENST00000557084 PIAS4Q8N2W9 510 aaPredicted RBP18.92■□□□□ 0.62
SYNE2-226ENST00000557084 ZNF777Q9ULD5 760 aaPredicted RBP18.91■□□□□ 0.62
SYNE2-226ENST00000557084 POGZQ7Z3K3 1410 aa18.91■□□□□ 0.62
SYNE2-226ENST00000557084 RICTORQ6R327 1708 aa18.88■□□□□ 0.61
SYNE2-226ENST00000557084 CCNB3Q8WWL7 1395 aa18.88■□□□□ 0.61
SYNE2-226ENST00000557084 MAGI2Q86UL8 1455 aa18.88■□□□□ 0.61
SYNE2-226ENST00000557084 AFAP1Q8N556 730 aa18.87■□□□□ 0.61
SYNE2-226ENST00000557084 CFDP1Q9UEE9 299 aaPredicted RBP18.87■□□□□ 0.61
SYNE2-226ENST00000557084 ZFYVE16Q7Z3T8 1539 aa18.86■□□□□ 0.61
SYNE2-226ENST00000557084 ZNF518AQ6AHZ1 1483 aa18.86■□□□□ 0.61
SYNE2-226ENST00000557084 ZMYM4Q5VZL5 1548 aa18.85■□□□□ 0.61
SYNE2-226ENST00000557084 ARHGEF40Q8TER5 1519 aa18.85■□□□□ 0.61
SYNE2-226ENST00000557084 VPS8Q8N3P4 1428 aa18.85■□□□□ 0.61
SYNE2-226ENST00000557084 PREX2Q70Z35 1606 aa18.84■□□□□ 0.61
SYNE2-226ENST00000557084 YEATS2Q9ULM3 1422 aa18.83■□□□□ 0.61
SYNE2-226ENST00000557084 CDC42BPBQ9Y5S2 1711 aa18.83■□□□□ 0.6
SYNE2-226ENST00000557084 GPATCH8Q9UKJ3 1502 aaKnown RBP18.82■□□□□ 0.6
SYNE2-226ENST00000557084 EHBP1L1Q8N3D4 1523 aa18.81■□□□□ 0.6
SYNE2-226ENST00000557084 APLP2Q06481 763 aa18.8■□□□□ 0.6
SYNE2-226ENST00000557084 MLECQ14165 292 aa18.79■□□□□ 0.6
SYNE2-226ENST00000557084 CDC42BPAQ5VT25 1732 aa18.79■□□□□ 0.6
SYNE2-226ENST00000557084 ATP10AO60312 1499 aa18.78■□□□□ 0.6
SYNE2-226ENST00000557084 HNRNPMP52272 730 aaKnown RBP eCLIP18.78■□□□□ 0.6
SYNE2-226ENST00000557084 TRAPPC8Q9Y2L5 1435 aa18.77■□□□□ 0.6
SYNE2-226ENST00000557084 ABCC1P33527 1531 aa18.77■□□□□ 0.6
SYNE2-226ENST00000557084 PLEKHH2Q8IVE3 1493 aa18.76■□□□□ 0.59
SYNE2-226ENST00000557084 C9orf84Q5VXU9 1444 aa18.75■□□□□ 0.59
SYNE2-226ENST00000557084 ARHGEF12Q9NZN5 1544 aa18.75■□□□□ 0.59
SYNE2-226ENST00000557084 TIAM1Q13009 1591 aa18.75■□□□□ 0.59
SYNE2-226ENST00000557084 SPAG9O60271 1321 aaKnown RBP18.74■□□□□ 0.59
SYNE2-226ENST00000557084 KDM5CP41229 1560 aa18.74■□□□□ 0.59
SYNE2-226ENST00000557084 MLH3Q9UHC1 1453 aa18.73■□□□□ 0.59
SYNE2-226ENST00000557084 BCORL1Q5H9F3 1711 aa18.73■□□□□ 0.59
SYNE2-226ENST00000557084 KIAA1107Q9UPP5 1409 aa18.73■□□□□ 0.59
SYNE2-226ENST00000557084 HECW2Q9P2P5 1572 aa18.72■□□□□ 0.59
SYNE2-226ENST00000557084 NCOA2Q15596 1464 aa18.72■□□□□ 0.59
SYNE2-226ENST00000557084 SYCP2Q9BX26 1530 aa18.72■□□□□ 0.59
SYNE2-226ENST00000557084 ADAMTSL3P82987 1691 aa18.72■□□□□ 0.59
SYNE2-226ENST00000557084 SAMD9LQ8IVG5 1584 aa18.72■□□□□ 0.59
SYNE2-226ENST00000557084 PTPRMP28827 1452 aa18.71■□□□□ 0.59
SYNE2-226ENST00000557084 ITSN2Q9NZM3 1697 aa18.71■□□□□ 0.59
SYNE2-226ENST00000557084 SUPT6HQ7KZ85 1726 aaKnown RBP18.71■□□□□ 0.59
SYNE2-226ENST00000557084 ZNF644Q9H582 1327 aaPredicted RBP18.71■□□□□ 0.59
SYNE2-226ENST00000557084 LRRC9Q6ZRR7 1453 aa18.71■□□□□ 0.59
SYNE2-226ENST00000557084 MADDQ8WXG6 1647 aa18.69■□□□□ 0.58
SYNE2-226ENST00000557084 KANK4Q5T7N3 995 aaPredicted RBP18.68■□□□□ 0.58
SYNE2-226ENST00000557084 ESF1Q9H501 851 aaKnown RBP18.67■□□□□ 0.58
SYNE2-226ENST00000557084 MAP3K1Q13233 1512 aa18.67■□□□□ 0.58
SYNE2-226ENST00000557084 DIP2CQ9Y2E4 1556 aa18.66■□□□□ 0.58
SYNE2-226ENST00000557084 ABCA6Q8N139 1617 aa18.63■□□□□ 0.57
SYNE2-226ENST00000557084 RSPH4AQ5TD94 716 aa18.63■□□□□ 0.57
SYNE2-226ENST00000557084 RIMS1Q86UR5 1692 aaKnown RBP18.63■□□□□ 0.57
SYNE2-226ENST00000557084 SIGLEC1Q9BZZ2 1709 aa18.63■□□□□ 0.57
SYNE2-226ENST00000557084 KIDINS220Q9ULH0 1771 aa18.6■□□□□ 0.57
SYNE2-226ENST00000557084 REREQ9P2R6 1566 aa18.6■□□□□ 0.57
SYNE2-226ENST00000557084 ATP7AQ04656 1500 aa18.6■□□□□ 0.57
SYNE2-226ENST00000557084 CAMSAP2Q08AD1 1489 aa18.6■□□□□ 0.57
SYNE2-226ENST00000557084 TSPY4P0CV99 314 aa18.6■□□□□ 0.57
SYNE2-226ENST00000557084 TSPY10P0CW01 314 aa18.6■□□□□ 0.57
SYNE2-226ENST00000557084 MBD5Q9P267 1494 aa18.59■□□□□ 0.57
SYNE2-226ENST00000557084 FER1L4A9Z1Z3 1794 aa18.58■□□□□ 0.56
SYNE2-226ENST00000557084 AGLP35573 1532 aa18.57■□□□□ 0.56
SYNE2-226ENST00000557084 CCDC141Q6ZP82 1450 aa18.57■□□□□ 0.56
SYNE2-226ENST00000557084 MYOM3Q5VTT5 1437 aa18.57■□□□□ 0.56
SYNE2-226ENST00000557084 A2MP01023 1474 aa18.55■□□□□ 0.56
SYNE2-226ENST00000557084 CEBPAP49715 358 aaPredicted RBP18.55■□□□□ 0.56
SYNE2-226ENST00000557084 RTEL1-TNFRSF6BF6WH68 1400 aa18.55■□□□□ 0.56
SYNE2-226ENST00000557084 INO80Q9ULG1 1556 aaPredicted RBP18.55■□□□□ 0.56
SYNE2-226ENST00000557084 MIA2Q96PC5 1412 aa18.54■□□□□ 0.56
SYNE2-226ENST00000557084 GGT6Q6P531 493 aa18.53■□□□□ 0.56
SYNE2-226ENST00000557084 MSH5O43196 834 aa18.52■□□□□ 0.56
SYNE2-226ENST00000557084 CNTLNQ9NXG0 1405 aa18.5■□□□□ 0.55
SYNE2-226ENST00000557084 DHX29Q7Z478 1369 aaKnown RBP18.49■□□□□ 0.55
SYNE2-226ENST00000557084 ARHGEF5Q12774 1597 aa18.48■□□□□ 0.55
SYNE2-226ENST00000557084 ADGBQ8N7X0 1667 aa18.47■□□□□ 0.55
SYNE2-226ENST00000557084 KIF3BO15066 747 aa18.47■□□□□ 0.55
SYNE2-226ENST00000557084 LMTK3Q96Q04 1460 aa18.46■□□□□ 0.55
SYNE2-226ENST00000557084 HSPA2P54652 639 aa18.46■□□□□ 0.55
SYNE2-226ENST00000557084 PLXNC1O60486 1568 aa18.46■□□□□ 0.55
SYNE2-226ENST00000557084 FGD6Q6ZV73 1430 aa18.43■□□□□ 0.54
SYNE2-226ENST00000557084 ZMYM3Q14202 1370 aa18.42■□□□□ 0.54
SYNE2-226ENST00000557084 UHRF1BP1Q6BDS2 1440 aa18.41■□□□□ 0.54
SYNE2-226ENST00000557084 FAM50AQ14320 339 aaKnown RBP18.41■□□□□ 0.54
SYNE2-226ENST00000557084 PTPN23Q9H3S7 1636 aa18.41■□□□□ 0.54
SYNE2-226ENST00000557084 WASHC2CQ9Y4E1 1318 aa18.39■□□□□ 0.53
SYNE2-226ENST00000557084 SETD1BQ9UPS6 1966 aaKnown RBP18.39■□□□□ 0.53
SYNE2-226ENST00000557084 C3P01024 1663 aa18.38■□□□□ 0.53
SYNE2-226ENST00000557084 RRP7BPQ9NSQ0 103 aa18.37■□□□□ 0.53
SYNE2-226ENST00000557084 MAST1Q9Y2H9 1570 aa18.37■□□□□ 0.53
SYNE2-226ENST00000557084 ABCC5O15440 1437 aa18.36■□□□□ 0.53
SYNE2-226ENST00000557084 PPARGC1BQ86YN6 1023 aaKnown RBP18.36■□□□□ 0.53
SYNE2-226ENST00000557084 PREX1Q8TCU6 1659 aa18.36■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms