RNA–Protein interactions for RNA: ENST00000557076.5

SCFD1-223, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 743 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-223ENST00000557076 HOXB3P14651 431 aaPredicted RBP10.01□□□□□ -0.81
SCFD1-223ENST00000557076 MS4A4AQ96JQ5 239 aa10.01□□□□□ -0.81
SCFD1-223ENST00000557076 BCL11BQ9C0K0 894 aaPredicted RBP10.01□□□□□ -0.81
SCFD1-223ENST00000557076 NLRP6P59044 892 aa10□□□□□ -0.81
SCFD1-223ENST00000557076 ZNF710Q8N1W2 664 aa10□□□□□ -0.81
SCFD1-223ENST00000557076 STK24Q9Y6E0 443 aa10□□□□□ -0.81
SCFD1-223ENST00000557076 RIMBP2O15034 1052 aa9.99□□□□□ -0.81
SCFD1-223ENST00000557076 HS3ST6Q96QI5 342 aa9.98□□□□□ -0.81
SCFD1-223ENST00000557076 FAM205CA6NFA0 338 aa9.97□□□□□ -0.81
SCFD1-223ENST00000557076 STK25O00506 426 aa9.97□□□□□ -0.81
SCFD1-223ENST00000557076 HOXB1P14653 301 aaPredicted RBP9.96□□□□□ -0.82
SCFD1-223ENST00000557076 PKD2Q13563 968 aa9.95□□□□□ -0.82
SCFD1-223ENST00000557076 FBXO22Q8NEZ5 403 aa9.95□□□□□ -0.82
SCFD1-223ENST00000557076 CUX2O14529 1486 aa9.95□□□□□ -0.82
SCFD1-223ENST00000557076 TMEM92Q6UXU6 159 aa9.94□□□□□ -0.82
SCFD1-223ENST00000557076 SPNS2Q8IVW8 549 aa9.93□□□□□ -0.82
SCFD1-223ENST00000557076 ZSWIM6Q9HCJ5 1215 aa9.93□□□□□ -0.82
SCFD1-223ENST00000557076 DCAF1Q9Y4B6 1507 aa9.92□□□□□ -0.82
SCFD1-223ENST00000557076 POTEB3A0JP26 581 aa9.91□□□□□ -0.82
SCFD1-223ENST00000557076 POTEBQ6S5H4 581 aa9.91□□□□□ -0.82
SCFD1-223ENST00000557076 MFRPQ9BY79 579 aa9.91□□□□□ -0.82
SCFD1-223ENST00000557076 SCRIBQ14160 1630 aa9.9□□□□□ -0.82
SCFD1-223ENST00000557076 RGL2O15211 777 aa9.9□□□□□ -0.82
SCFD1-223ENST00000557076 MMRN1Q13201 1228 aa9.9□□□□□ -0.82
SCFD1-223ENST00000557076 ERBB3P21860 1342 aa9.89□□□□□ -0.83
SCFD1-223ENST00000557076 KRTAP3-3Q9BYR6 98 aa9.88□□□□□ -0.83
SCFD1-223ENST00000557076 KRTAP3-2Q9BYR7 98 aa9.88□□□□□ -0.83
SCFD1-223ENST00000557076 ZCCHC6Q5VYS8 1495 aaKnown RBP9.84□□□□□ -0.83
SCFD1-223ENST00000557076 GPR153Q6NV75 609 aa9.83□□□□□ -0.84
SCFD1-223ENST00000557076 ERCC6Q03468 1493 aa9.81□□□□□ -0.84
SCFD1-223ENST00000557076 VARS2Q5ST30 1063 aaKnown RBP9.81□□□□□ -0.84
SCFD1-223ENST00000557076 KIF3CO14782 793 aa9.8□□□□□ -0.84
SCFD1-223ENST00000557076 C2orf72A6NCS6 295 aa9.78□□□□□ -0.84
SCFD1-223ENST00000557076 ARSIQ5FYB1 569 aa9.77□□□□□ -0.85
SCFD1-223ENST00000557076 ZNF687Q8N1G0 1237 aa9.77□□□□□ -0.85
SCFD1-223ENST00000557076 TMC2Q8TDI7 906 aa9.76□□□□□ -0.85
SCFD1-223ENST00000557076 HS6ST3Q8IZP7 471 aa9.75□□□□□ -0.85
SCFD1-223ENST00000557076 NCAPD3P42695 1498 aa9.73□□□□□ -0.85
SCFD1-223ENST00000557076 ZNF316A6NFI3 1004 aaPredicted RBP9.72□□□□□ -0.85
SCFD1-223ENST00000557076 SLC34A2O95436 690 aa9.72□□□□□ -0.85
SCFD1-223ENST00000557076 PPP1R37O75864 691 aa9.7□□□□□ -0.86
SCFD1-223ENST00000557076 KHSRPQ92945 711 aaKnown RBP eCLIP9.7□□□□□ -0.863e-7■■■■□ 20.3
SCFD1-223ENST00000557076 CHGAP10645 457 aaKnown RBP9.67□□□□□ -0.86
SCFD1-223ENST00000557076 PTGER2P43116 358 aa9.67□□□□□ -0.86
SCFD1-223ENST00000557076 PCDHGA4Q9Y5G9 962 aa9.67□□□□□ -0.86
SCFD1-223ENST00000557076 NUDT7P0C024 238 aa9.66□□□□□ -0.86
SCFD1-223ENST00000557076 RYDENQ9NUL5 291 aaKnown RBP9.65□□□□□ -0.86
SCFD1-223ENST00000557076 RNF166Q96A37 237 aaPredicted RBP9.64□□□□□ -0.87
SCFD1-223ENST00000557076 PBX2P40425 430 aa9.63□□□□□ -0.87
SCFD1-223ENST00000557076 MYT1LQ9UL68 1186 aa9.63□□□□□ -0.87
SCFD1-223ENST00000557076 FOXK1P85037 733 aa9.62□□□□□ -0.87
SCFD1-223ENST00000557076 PSDA5PKW4 1024 aaPredicted RBP9.61□□□□□ -0.87
SCFD1-223ENST00000557076 GPHNQ9NQX3 736 aaPredicted RBP9.61□□□□□ -0.87
SCFD1-223ENST00000557076 LHX6Q9UPM6 363 aa9.61□□□□□ -0.87
SCFD1-223ENST00000557076 NESP48681 1621 aa9.6□□□□□ -0.87
SCFD1-223ENST00000557076 ATAD2BQ9ULI0 1458 aa9.6□□□□□ -0.87
SCFD1-223ENST00000557076 PTCD2Q8WV60 388 aaKnown RBP9.6□□□□□ -0.87
SCFD1-223ENST00000557076 LSM11P83369 360 aaKnown RBP eCLIP9.59□□□□□ -0.87
SCFD1-223ENST00000557076 ANKRD13DQ6ZTN6 518 aa9.59□□□□□ -0.87
SCFD1-223ENST00000557076 PLPP6Q8IY26 295 aa9.59□□□□□ -0.87
SCFD1-223ENST00000557076 TBC1D12O60347 775 aa9.55□□□□□ -0.88
SCFD1-223ENST00000557076 DSG2Q14126 1118 aa9.55□□□□□ -0.88
SCFD1-223ENST00000557076 NKX1-1Q15270 411 aaPredicted RBP9.55□□□□□ -0.88
SCFD1-223ENST00000557076 KDM4FA0A1W2PPD8 638 aa9.53□□□□□ -0.88
SCFD1-223ENST00000557076 PDS5BQ9NTI5 1447 aa9.53□□□□□ -0.88
SCFD1-223ENST00000557076 POTEEQ6S8J3 1075 aa9.51□□□□□ -0.89
SCFD1-223ENST00000557076 HMGXB3Q12766 1538 aa9.51□□□□□ -0.89
SCFD1-223ENST00000557076 SMARCA2P51531 1590 aa9.5□□□□□ -0.89
SCFD1-223ENST00000557076 ARHGAP33O14559 1287 aa9.5□□□□□ -0.89
SCFD1-223ENST00000557076 CRISPLD2Q9H0B8 497 aa9.5□□□□□ -0.89
SCFD1-223ENST00000557076 AXIN2Q9Y2T1 843 aa9.5□□□□□ -0.89
SCFD1-223ENST00000557076 PPP4R3BQ5MIZ7 849 aa9.49□□□□□ -0.89
SCFD1-223ENST00000557076 THOC2Q8NI27 1593 aaKnown RBP9.49□□□□□ -0.89
SCFD1-223ENST00000557076 LAMC3Q9Y6N6 1575 aa9.46□□□□□ -0.89
SCFD1-223ENST00000557076 PDE4AP27815 886 aa9.46□□□□□ -0.9
SCFD1-223ENST00000557076 PPP1R15BQ5SWA1 713 aa9.46□□□□□ -0.9
SCFD1-223ENST00000557076 OXER1Q8TDS5 423 aa9.46□□□□□ -0.9
SCFD1-223ENST00000557076 TK2O00142 265 aa9.45□□□□□ -0.9
SCFD1-223ENST00000557076 ADGRD1Q6QNK2 874 aa9.45□□□□□ -0.9
SCFD1-223ENST00000557076 BAZ1BQ9UIG0 1483 aaKnown RBP9.45□□□□□ -0.9
SCFD1-223ENST00000557076 GTPBP6O43824 516 aaPredicted RBP9.44□□□□□ -0.9
SCFD1-223ENST00000557076 KCNH8Q96L42 1107 aa9.44□□□□□ -0.9
SCFD1-223ENST00000557076 CADPSQ9ULU8 1353 aa9.44□□□□□ -0.9
SCFD1-223ENST00000557076 UPF1Q92900 1129 aaKnown RBP eCLIP9.42□□□□□ -0.9
SCFD1-223ENST00000557076 NCKAP5LQ9HCH0 1330 aa9.41□□□□□ -0.9
SCFD1-223ENST00000557076 PSEN2P49810 448 aa9.4□□□□□ -0.9
SCFD1-223ENST00000557076 DMRTA1Q5VZB9 504 aa9.39□□□□□ -0.91
SCFD1-223ENST00000557076 MRC2Q9UBG0 1479 aa9.39□□□□□ -0.91
SCFD1-223ENST00000557076 DDX27Q96GQ7 796 aaKnown RBP9.38□□□□□ -0.91
SCFD1-223ENST00000557076 HCSTQ9UBK5 93 aa9.38□□□□□ -0.91
SCFD1-223ENST00000557076 SMARCA4P51532 1647 aa9.38□□□□□ -0.91
SCFD1-223ENST00000557076 HRO43593 1189 aa9.37□□□□□ -0.91
SCFD1-223ENST00000557076 ZNF454Q8N9F8 522 aa9.37□□□□□ -0.91
SCFD1-223ENST00000557076 KCNK17Q96T54 332 aa9.37□□□□□ -0.91
SCFD1-223ENST00000557076 LARP6Q9BRS8 491 aaKnown RBP9.37□□□□□ -0.91
SCFD1-223ENST00000557076 STAC3Q96MF2 364 aa9.36□□□□□ -0.91
SCFD1-223ENST00000557076 MFSD10Q14728 455 aa9.35□□□□□ -0.91
SCFD1-223ENST00000557076 CYB5RLQ6IPT4 315 aa9.35□□□□□ -0.91
SCFD1-223ENST00000557076 PEG3Q9GZU2 1588 aa9.35□□□□□ -0.91
SCFD1-223ENST00000557076 BCL2L12Q9HB09 334 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms