RNA–Protein interactions for RNA: ENST00000556422.5

TMEM260-210, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 3,864 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-210ENST00000556422 RAPGEF6Q8TEU7 1601 aa7.34□□□□□ -1.23
TMEM260-210ENST00000556422 NUP160Q12769 1436 aa7.33□□□□□ -1.24
TMEM260-210ENST00000556422 NUP153P49790 1475 aaKnown RBP7.33□□□□□ -1.24
TMEM260-210ENST00000556422 TCOF1Q13428 1488 aaKnown RBP7.32□□□□□ -1.24
TMEM260-210ENST00000556422 KCNA4P22459 653 aa7.32□□□□□ -1.24
TMEM260-210ENST00000556422 HFM1A2PYH4 1435 aa7.31□□□□□ -1.24
TMEM260-210ENST00000556422 GCC2Q8IWJ2 1684 aa7.3□□□□□ -1.24
TMEM260-210ENST00000556422 NAIPQ13075 1403 aa7.29□□□□□ -1.24
TMEM260-210ENST00000556422 PLB1Q6P1J6 1458 aa7.29□□□□□ -1.24
TMEM260-210ENST00000556422 CHD1O14646 1710 aa7.29□□□□□ -1.24
TMEM260-210ENST00000556422 CHMP7Q8WUX9 453 aaPredicted RBP7.28□□□□□ -1.24
TMEM260-210ENST00000556422 KDM6BO15054 1643 aa7.28□□□□□ -1.24
TMEM260-210ENST00000556422 ADCY10Q96PN6 1610 aa7.28□□□□□ -1.24
TMEM260-210ENST00000556422 MIA2Q96PC5 1412 aa7.27□□□□□ -1.25
TMEM260-210ENST00000556422 ARID3CA6NKF2 412 aa7.27□□□□□ -1.25
TMEM260-210ENST00000556422 KIF14Q15058 1648 aa7.27□□□□□ -1.25
TMEM260-210ENST00000556422 ABCA8O94911 1581 aa7.26□□□□□ -1.25
TMEM260-210ENST00000556422 UACAQ9BZF9 1416 aa7.26□□□□□ -1.25
TMEM260-210ENST00000556422 DNMT1P26358 1616 aaKnown RBP7.26□□□□□ -1.25
TMEM260-210ENST00000556422 DENND4BO75064 1496 aaPredicted RBP7.26□□□□□ -1.25
TMEM260-210ENST00000556422 A0A0U1RQG5 324 aaPredicted RBP7.25□□□□□ -1.25
TMEM260-210ENST00000556422 FBLN2P98095 1184 aa7.25□□□□□ -1.25
TMEM260-210ENST00000556422 AKNAQ7Z591 1439 aa7.25□□□□□ -1.25
TMEM260-210ENST00000556422 DHX37Q8IY37 1157 aaKnown RBP7.25□□□□□ -1.25
TMEM260-210ENST00000556422 JPH4Q96JJ6 628 aa7.25□□□□□ -1.25
TMEM260-210ENST00000556422 SIN3AQ96ST3 1273 aa7.25□□□□□ -1.25
TMEM260-210ENST00000556422 ITSN2Q9NZM3 1697 aa7.24□□□□□ -1.25
TMEM260-210ENST00000556422 PRG4Q92954 1404 aaPredicted RBP7.24□□□□□ -1.25
TMEM260-210ENST00000556422 CCDC136Q96JN2 1154 aa7.24□□□□□ -1.25
TMEM260-210ENST00000556422 SHROOM2Q13796 1616 aa7.24□□□□□ -1.25
TMEM260-210ENST00000556422 BCL11BQ9C0K0 894 aaPredicted RBP7.24□□□□□ -1.25
TMEM260-210ENST00000556422 CDC42BPAQ5VT25 1732 aa7.24□□□□□ -1.25
TMEM260-210ENST00000556422 TROQ12816 1431 aaPredicted RBP7.24□□□□□ -1.25
TMEM260-210ENST00000556422 CARMIL2Q6F5E8 1435 aa7.24□□□□□ -1.25
TMEM260-210ENST00000556422 CROCC2H7BZ55 1655 aa7.23□□□□□ -1.25
TMEM260-210ENST00000556422 KDM5BQ9UGL1 1544 aa7.23□□□□□ -1.25
TMEM260-210ENST00000556422 CHMP4AQ9BY43 222 aa7.23□□□□□ -1.25
TMEM260-210ENST00000556422 DAPK1P53355 1430 aa7.22□□□□□ -1.25
TMEM260-210ENST00000556422 MIER1Q8N108 512 aa7.22□□□□□ -1.25
TMEM260-210ENST00000556422 GTF3C3Q9Y5Q9 886 aa7.22□□□□□ -1.25
TMEM260-210ENST00000556422 ABCC5O15440 1437 aa7.22□□□□□ -1.25
TMEM260-210ENST00000556422 GPATCH8Q9UKJ3 1502 aaKnown RBP7.21□□□□□ -1.25
TMEM260-210ENST00000556422 BCANQ96GW7 911 aa7.21□□□□□ -1.25
TMEM260-210ENST00000556422 ZNF644Q9H582 1327 aaPredicted RBP7.21□□□□□ -1.26
TMEM260-210ENST00000556422 TAF7LQ5H9L4 462 aa7.21□□□□□ -1.26
TMEM260-210ENST00000556422 ADGBQ8N7X0 1667 aa7.21□□□□□ -1.26
TMEM260-210ENST00000556422 ATP10BO94823 1461 aa7.21□□□□□ -1.26
TMEM260-210ENST00000556422 CAMSAP2Q08AD1 1489 aa7.21□□□□□ -1.26
TMEM260-210ENST00000556422 RRP7BPQ9NSQ0 103 aa7.2□□□□□ -1.26
TMEM260-210ENST00000556422 CHIC2Q9UKJ5 165 aa7.2□□□□□ -1.26
TMEM260-210ENST00000556422 ABCC10Q5T3U5 1492 aa7.2□□□□□ -1.26
TMEM260-210ENST00000556422 ERCC6L2Q5T890 1561 aa7.2□□□□□ -1.26
TMEM260-210ENST00000556422 NEUROD1Q13562 356 aa7.2□□□□□ -1.26
TMEM260-210ENST00000556422 ROCK1Q13464 1354 aa7.19□□□□□ -1.26
TMEM260-210ENST00000556422 POLR3GLQ9BT43 218 aa7.19□□□□□ -1.26
TMEM260-210ENST00000556422 CDK11AQ9UQ88 783 aaPredicted RBP7.18□□□□□ -1.26
TMEM260-210ENST00000556422 CDC42BPBQ9Y5S2 1711 aa7.18□□□□□ -1.26
TMEM260-210ENST00000556422 ACIN1Q9UKV3 1341 aaKnown RBP7.17□□□□□ -1.26
TMEM260-210ENST00000556422 PPP1R15AO75807 674 aaPredicted RBP7.17□□□□□ -1.26
TMEM260-210ENST00000556422 CLASP1Q7Z460 1538 aa7.17□□□□□ -1.26
TMEM260-210ENST00000556422 ADGRL2O95490 1459 aa7.17□□□□□ -1.26
TMEM260-210ENST00000556422 CDK11BP21127 795 aaKnown RBP7.16□□□□□ -1.26
TMEM260-210ENST00000556422 GLIPR1L2Q4G1C9 344 aa7.16□□□□□ -1.26
TMEM260-210ENST00000556422 PREX2Q70Z35 1606 aa7.16□□□□□ -1.26
TMEM260-210ENST00000556422 PTPRGP23470 1445 aa7.16□□□□□ -1.26
TMEM260-210ENST00000556422 FOXD1Q16676 465 aa7.16□□□□□ -1.26
TMEM260-210ENST00000556422 NCOA1Q15788 1441 aa7.15□□□□□ -1.26
TMEM260-210ENST00000556422 SALL2Q9Y467 1007 aaPredicted RBP7.15□□□□□ -1.26
TMEM260-210ENST00000556422 CFDP1Q9UEE9 299 aaPredicted RBP7.14□□□□□ -1.27
TMEM260-210ENST00000556422 TONSLQ96HA7 1378 aa7.14□□□□□ -1.27
TMEM260-210ENST00000556422 TTC37Q6PGP7 1564 aa7.14□□□□□ -1.27
TMEM260-210ENST00000556422 SAMD9LQ8IVG5 1584 aa7.14□□□□□ -1.27
TMEM260-210ENST00000556422 BRD2P25440 801 aaKnown RBP7.14□□□□□ -1.27
TMEM260-210ENST00000556422 PZPP20742 1482 aa7.14□□□□□ -1.27
TMEM260-210ENST00000556422 ABCC2Q92887 1545 aa7.14□□□□□ -1.27
TMEM260-210ENST00000556422 SHANK2Q9UPX8 1470 aa7.13□□□□□ -1.27
TMEM260-210ENST00000556422 MPHOSPH9Q99550 1183 aa7.13□□□□□ -1.27
TMEM260-210ENST00000556422 ARHGEF5Q12774 1597 aa7.13□□□□□ -1.27
TMEM260-210ENST00000556422 FGD1P98174 961 aa7.13□□□□□ -1.27
TMEM260-210ENST00000556422 PLEKHD1A6NEE1 506 aa7.12□□□□□ -1.27
TMEM260-210ENST00000556422 MBD5Q9P267 1494 aa7.12□□□□□ -1.27
TMEM260-210ENST00000556422 ANKRD30BQ9BXX2 1392 aa7.12□□□□□ -1.27
TMEM260-210ENST00000556422 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP7.12□□□□□ -1.27
TMEM260-210ENST00000556422 RPRD2Q5VT52 1461 aaKnown RBP7.12□□□□□ -1.27
TMEM260-210ENST00000556422 TEX14Q8IWB6 1497 aa7.12□□□□□ -1.27
TMEM260-210ENST00000556422 ZCCHC11Q5TAX3 1644 aaKnown RBP7.11□□□□□ -1.27
TMEM260-210ENST00000556422 OSCARQ8IYS5 282 aa7.11□□□□□ -1.27
TMEM260-210ENST00000556422 YTHDC1Q96MU7 727 aaKnown RBP7.11□□□□□ -1.27
TMEM260-210ENST00000556422 MYO5CQ9NQX4 1742 aa7.11□□□□□ -1.27
TMEM260-210ENST00000556422 TRIM52Q96A61 297 aa7.11□□□□□ -1.27
TMEM260-210ENST00000556422 C9orf84Q5VXU9 1444 aa7.1□□□□□ -1.27
TMEM260-210ENST00000556422 HIRIP3Q9BW71 556 aaPredicted RBP7.1□□□□□ -1.27
TMEM260-210ENST00000556422 ZNF777Q9ULD5 760 aaPredicted RBP7.1□□□□□ -1.27
TMEM260-210ENST00000556422 KDM5DQ9BY66 1539 aa7.09□□□□□ -1.27
TMEM260-210ENST00000556422 PAXIP1Q6ZW49 1069 aaPredicted RBP7.09□□□□□ -1.27
TMEM260-210ENST00000556422 SYCP2Q9BX26 1530 aa7.09□□□□□ -1.27
TMEM260-210ENST00000556422 ANKRD50Q9ULJ7 1429 aa7.09□□□□□ -1.27
TMEM260-210ENST00000556422 ANKRD30AQ9BXX3 1397 aa7.09□□□□□ -1.27
TMEM260-210ENST00000556422 ZBTB4Q9P1Z0 1013 aaPredicted RBP7.09□□□□□ -1.27
TMEM260-210ENST00000556422 UHRF1BP1LA0JNW5 1464 aa7.08□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms