RNA–Protein interactions for RNA: ENST00000556342.1

SYNE2-221, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 5

Gene SYNE2, Length 572 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-221ENST00000556342 ABCB7O75027 752 aa18.17■□□□□ 0.5
SYNE2-221ENST00000556342 SAMD9Q5K651 1589 aa18.17■□□□□ 0.5
SYNE2-221ENST00000556342 RAPGEF6Q8TEU7 1601 aa18.14■□□□□ 0.49
SYNE2-221ENST00000556342 NEO1Q92859 1461 aa18.14■□□□□ 0.49
SYNE2-221ENST00000556342 RAPGEF3O95398 923 aa18.13■□□□□ 0.49
SYNE2-221ENST00000556342 NUP153P49790 1475 aaKnown RBP18.1■□□□□ 0.49
SYNE2-221ENST00000556342 ADAMTSL3P82987 1691 aa18.09■□□□□ 0.49
SYNE2-221ENST00000556342 PTPRMP28827 1452 aa18.08■□□□□ 0.49
SYNE2-221ENST00000556342 FHOD3Q2V2M9 1422 aa18.06■□□□□ 0.48
SYNE2-221ENST00000556342 FRMPD1Q5SYB0 1578 aa18.06■□□□□ 0.48
SYNE2-221ENST00000556342 EEA1Q15075 1411 aa18.06■□□□□ 0.48
SYNE2-221ENST00000556342 RANGAP1P46060 587 aaPredicted RBP18.05■□□□□ 0.48
SYNE2-221ENST00000556342 POLA2Q14181 598 aa18.04■□□□□ 0.48
SYNE2-221ENST00000556342 ARID4BQ4LE39 1312 aaPredicted RBP18.02■□□□□ 0.48
SYNE2-221ENST00000556342 PLEKHD1A6NEE1 506 aa18.02■□□□□ 0.48
SYNE2-221ENST00000556342 BCORL1Q5H9F3 1711 aa18.01■□□□□ 0.47
SYNE2-221ENST00000556342 DENND4BO75064 1496 aaPredicted RBP18.01■□□□□ 0.47
SYNE2-221ENST00000556342 ARHGEF40Q8TER5 1519 aa17.99■□□□□ 0.47
SYNE2-221ENST00000556342 MADDQ8WXG6 1647 aa17.99■□□□□ 0.47
SYNE2-221ENST00000556342 AKNAQ7Z591 1439 aa17.98■□□□□ 0.47
SYNE2-221ENST00000556342 FBXO41Q8TF61 875 aa17.98■□□□□ 0.47
SYNE2-221ENST00000556342 FANCAO15360 1455 aa17.98■□□□□ 0.47
SYNE2-221ENST00000556342 EFCAB5A4FU69 1503 aa17.96■□□□□ 0.47
SYNE2-221ENST00000556342 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.96■□□□□ 0.47
SYNE2-221ENST00000556342 PCF11O94913 1555 aaKnown RBP17.96■□□□□ 0.46
SYNE2-221ENST00000556342 RICTORQ6R327 1708 aa17.95■□□□□ 0.46
SYNE2-221ENST00000556342 CFAP74Q9C0B2 1584 aa17.94■□□□□ 0.46
SYNE2-221ENST00000556342 LMTK3Q96Q04 1460 aa17.94■□□□□ 0.46
SYNE2-221ENST00000556342 TTC37Q6PGP7 1564 aa17.93■□□□□ 0.46
SYNE2-221ENST00000556342 ZMYM4Q5VZL5 1548 aa17.92■□□□□ 0.46
SYNE2-221ENST00000556342 POGZQ7Z3K3 1410 aa17.9■□□□□ 0.46
SYNE2-221ENST00000556342 ZFYVE16Q7Z3T8 1539 aa17.9■□□□□ 0.46
SYNE2-221ENST00000556342 RIMS1Q86UR5 1692 aaKnown RBP17.9■□□□□ 0.46
SYNE2-221ENST00000556342 YEATS2Q9ULM3 1422 aa17.89■□□□□ 0.46
SYNE2-221ENST00000556342 CDK13Q14004 1512 aaKnown RBP17.89■□□□□ 0.45
SYNE2-221ENST00000556342 MAGI2Q86UL8 1455 aa17.88■□□□□ 0.45
SYNE2-221ENST00000556342 PLCH2O75038 1416 aa17.86■□□□□ 0.45
SYNE2-221ENST00000556342 HECW1Q76N89 1606 aa17.85■□□□□ 0.45
SYNE2-221ENST00000556342 SCAPERQ9BY12 1400 aa17.85■□□□□ 0.45
SYNE2-221ENST00000556342 SIGLEC1Q9BZZ2 1709 aa17.84■□□□□ 0.45
SYNE2-221ENST00000556342 HSPA2P54652 639 aa17.84■□□□□ 0.45
SYNE2-221ENST00000556342 FMN1Q68DA7 1419 aa17.81■□□□□ 0.44
SYNE2-221ENST00000556342 MLECQ14165 292 aa17.81■□□□□ 0.44
SYNE2-221ENST00000556342 ATP1B4Q9UN42 357 aaPredicted RBP17.8■□□□□ 0.44
SYNE2-221ENST00000556342 UBTFP17480 764 aaKnown RBP17.79■□□□□ 0.44
SYNE2-221ENST00000556342 EFCAB2Q5VUJ9 269 aa17.79■□□□□ 0.44
SYNE2-221ENST00000556342 ATP10AO60312 1499 aa17.78■□□□□ 0.44
SYNE2-221ENST00000556342 ARHGAP35Q9NRY4 1499 aa17.78■□□□□ 0.44
SYNE2-221ENST00000556342 ZBTB12Q9Y330 459 aaPredicted RBP17.78■□□□□ 0.44
SYNE2-221ENST00000556342 CDK11AQ9UQ88 783 aaPredicted RBP17.77■□□□□ 0.44
SYNE2-221ENST00000556342 C9orf84Q5VXU9 1444 aa17.77■□□□□ 0.44
SYNE2-221ENST00000556342 ARHGEF12Q9NZN5 1544 aa17.76■□□□□ 0.43
SYNE2-221ENST00000556342 FER1L4A9Z1Z3 1794 aa17.75■□□□□ 0.43
SYNE2-221ENST00000556342 TROQ12816 1431 aaPredicted RBP17.74■□□□□ 0.43
SYNE2-221ENST00000556342 MYO5CQ9NQX4 1742 aa17.74■□□□□ 0.43
SYNE2-221ENST00000556342 KIF14Q15058 1648 aa17.73■□□□□ 0.43
SYNE2-221ENST00000556342 ZNF518AQ6AHZ1 1483 aa17.73■□□□□ 0.43
SYNE2-221ENST00000556342 ARHGAP5Q13017 1502 aa17.71■□□□□ 0.43
SYNE2-221ENST00000556342 CLIP1P30622 1438 aa17.71■□□□□ 0.43
SYNE2-221ENST00000556342 AFAP1Q8N556 730 aa17.7■□□□□ 0.42
SYNE2-221ENST00000556342 CERKQ8TCT0 537 aa17.7■□□□□ 0.42
SYNE2-221ENST00000556342 KDM5CP41229 1560 aa17.7■□□□□ 0.42
SYNE2-221ENST00000556342 CEBPAP49715 358 aaPredicted RBP17.69■□□□□ 0.42
SYNE2-221ENST00000556342 PREX1Q8TCU6 1659 aa17.65■□□□□ 0.42
SYNE2-221ENST00000556342 MYT1LQ9UL68 1186 aa17.65■□□□□ 0.42
SYNE2-221ENST00000556342 DIP2CQ9Y2E4 1556 aa17.65■□□□□ 0.42
SYNE2-221ENST00000556342 MLH3Q9UHC1 1453 aa17.63■□□□□ 0.41
SYNE2-221ENST00000556342 REREQ9P2R6 1566 aa17.63■□□□□ 0.41
SYNE2-221ENST00000556342 UHRF1BP1Q6BDS2 1440 aa17.63■□□□□ 0.41
SYNE2-221ENST00000556342 LRRIQ1Q96JM4 1722 aa17.62■□□□□ 0.41
SYNE2-221ENST00000556342 TRAPPC8Q9Y2L5 1435 aa17.61■□□□□ 0.41
SYNE2-221ENST00000556342 CASKIN1Q8WXD9 1431 aa17.6■□□□□ 0.41
SYNE2-221ENST00000556342 CCDC18Q5T9S5 1454 aa17.6■□□□□ 0.41
SYNE2-221ENST00000556342 ABCC1P33527 1531 aa17.6■□□□□ 0.41
SYNE2-221ENST00000556342 ABCA6Q8N139 1617 aa17.6■□□□□ 0.41
SYNE2-221ENST00000556342 CDC42BPBQ9Y5S2 1711 aa17.59■□□□□ 0.41
SYNE2-221ENST00000556342 PREX2Q70Z35 1606 aa17.59■□□□□ 0.41
SYNE2-221ENST00000556342 AGLP35573 1532 aa17.59■□□□□ 0.41
SYNE2-221ENST00000556342 RBM42Q9BTD8 480 aaKnown RBP17.57■□□□□ 0.4
SYNE2-221ENST00000556342 STRCQ7RTU9 1775 aa17.56■□□□□ 0.4
SYNE2-221ENST00000556342 SETD1BQ9UPS6 1966 aaKnown RBP17.55■□□□□ 0.4
SYNE2-221ENST00000556342 ESF1Q9H501 851 aaKnown RBP17.55■□□□□ 0.4
SYNE2-221ENST00000556342 ITSN2Q9NZM3 1697 aa17.54■□□□□ 0.4
SYNE2-221ENST00000556342 C3P01024 1663 aa17.53■□□□□ 0.4
SYNE2-221ENST00000556342 KIDINS220Q9ULH0 1771 aa17.52■□□□□ 0.4
SYNE2-221ENST00000556342 PTPRTO14522 1441 aa17.52■□□□□ 0.4
SYNE2-221ENST00000556342 CNTLNQ9NXG0 1405 aa17.52■□□□□ 0.4
SYNE2-221ENST00000556342 FYCO1Q9BQS8 1478 aa17.5■□□□□ 0.39
SYNE2-221ENST00000556342 CDC42BPAQ5VT25 1732 aa17.5■□□□□ 0.39
SYNE2-221ENST00000556342 ZNF777Q9ULD5 760 aaPredicted RBP17.49■□□□□ 0.39
SYNE2-221ENST00000556342 SAMD9LQ8IVG5 1584 aa17.49■□□□□ 0.39
SYNE2-221ENST00000556342 SYCP2Q9BX26 1530 aa17.47■□□□□ 0.39
SYNE2-221ENST00000556342 GPATCH8Q9UKJ3 1502 aaKnown RBP17.47■□□□□ 0.39
SYNE2-221ENST00000556342 NCOA1Q15788 1441 aa17.47■□□□□ 0.39
SYNE2-221ENST00000556342 SPAG9O60271 1321 aaKnown RBP17.47■□□□□ 0.39
SYNE2-221ENST00000556342 NPATQ14207 1427 aa17.46■□□□□ 0.39
SYNE2-221ENST00000556342 HNRNPMP52272 730 aaKnown RBP eCLIP17.44■□□□□ 0.38
SYNE2-221ENST00000556342 ZMYM3Q14202 1370 aa17.43■□□□□ 0.38
SYNE2-221ENST00000556342 MKRN4PQ13434 485 aaPredicted RBP17.43■□□□□ 0.38
SYNE2-221ENST00000556342 KIAA1107Q9UPP5 1409 aa17.43■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms