RNA–Protein interactions for RNA: ENST00000556315.5

ATXN3-239, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 924 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-239ENST00000556315 TAOK2Q9UL54 1235 aa9.78□□□□□ -0.84
ATXN3-239ENST00000556315 PHF8Q9UPP1 1060 aa9.78□□□□□ -0.84
ATXN3-239ENST00000556315 ERCC6Q03468 1493 aa9.78□□□□□ -0.84
ATXN3-239ENST00000556315 MICALL2Q8IY33 904 aa9.77□□□□□ -0.85
ATXN3-239ENST00000556315 BCL11BQ9C0K0 894 aaPredicted RBP9.75□□□□□ -0.85
ATXN3-239ENST00000556315 NCAPD3P42695 1498 aa9.74□□□□□ -0.85
ATXN3-239ENST00000556315 ECM2O94769 699 aaPredicted RBP9.74□□□□□ -0.85
ATXN3-239ENST00000556315 EMP3P54852 163 aa9.74□□□□□ -0.85
ATXN3-239ENST00000556315 PKD2Q13563 968 aa9.74□□□□□ -0.85
ATXN3-239ENST00000556315 TMEM92Q6UXU6 159 aa9.74□□□□□ -0.85
ATXN3-239ENST00000556315 NLRP6P59044 892 aa9.72□□□□□ -0.85
ATXN3-239ENST00000556315 FBXO22Q8NEZ5 403 aa9.72□□□□□ -0.85
ATXN3-239ENST00000556315 POTEB3A0JP26 581 aa9.71□□□□□ -0.86
ATXN3-239ENST00000556315 POTEBQ6S5H4 581 aa9.71□□□□□ -0.86
ATXN3-239ENST00000556315 STK24Q9Y6E0 443 aa9.71□□□□□ -0.86
ATXN3-239ENST00000556315 DOK7Q18PE1 504 aa9.7□□□□□ -0.86
ATXN3-239ENST00000556315 AMER1Q5JTC6 1135 aaPredicted RBP9.7□□□□□ -0.86
ATXN3-239ENST00000556315 RGL2O15211 777 aa9.69□□□□□ -0.86
ATXN3-239ENST00000556315 HOXB1P14653 301 aaPredicted RBP9.69□□□□□ -0.86
ATXN3-239ENST00000556315 HS3ST6Q96QI5 342 aa9.69□□□□□ -0.86
ATXN3-239ENST00000556315 FAM205CA6NFA0 338 aa9.68□□□□□ -0.86
ATXN3-239ENST00000556315 STK25O00506 426 aa9.68□□□□□ -0.86
ATXN3-239ENST00000556315 MFRPQ9BY79 579 aa9.68□□□□□ -0.86
ATXN3-239ENST00000556315 ZNF710Q8N1W2 664 aa9.67□□□□□ -0.86
ATXN3-239ENST00000556315 SPNS2Q8IVW8 549 aa9.66□□□□□ -0.86
ATXN3-239ENST00000556315 ATAD2BQ9ULI0 1458 aa9.65□□□□□ -0.87
ATXN3-239ENST00000556315 KRTAP3-3Q9BYR6 98 aa9.64□□□□□ -0.87
ATXN3-239ENST00000556315 KRTAP3-2Q9BYR7 98 aa9.64□□□□□ -0.87
ATXN3-239ENST00000556315 RIMBP2O15034 1052 aa9.63□□□□□ -0.87
ATXN3-239ENST00000556315 ZSWIM6Q9HCJ5 1215 aa9.63□□□□□ -0.87
ATXN3-239ENST00000556315 MMRN1Q13201 1228 aa9.62□□□□□ -0.87
ATXN3-239ENST00000556315 NESP48681 1621 aa9.6□□□□□ -0.87
ATXN3-239ENST00000556315 GPR153Q6NV75 609 aa9.59□□□□□ -0.87
ATXN3-239ENST00000556315 RTN4Q9NQC3 1192 aaKnown RBP9.59□□□□□ -0.87
ATXN3-239ENST00000556315 KIF3CO14782 793 aa9.58□□□□□ -0.88
ATXN3-239ENST00000556315 ERBB3P21860 1342 aa9.57□□□□□ -0.88
ATXN3-239ENST00000556315 SMARCA2P51531 1590 aa9.56□□□□□ -0.88
ATXN3-239ENST00000556315 HMGXB3Q12766 1538 aa9.55□□□□□ -0.88
ATXN3-239ENST00000556315 PDS5BQ9NTI5 1447 aa9.53□□□□□ -0.88
ATXN3-239ENST00000556315 C2orf72A6NCS6 295 aa9.52□□□□□ -0.89
ATXN3-239ENST00000556315 VARS2Q5ST30 1063 aaKnown RBP9.52□□□□□ -0.89
ATXN3-239ENST00000556315 BAZ1BQ9UIG0 1483 aaKnown RBP9.52□□□□□ -0.89
ATXN3-239ENST00000556315 PPP1R37O75864 691 aa9.51□□□□□ -0.89
ATXN3-239ENST00000556315 ARSIQ5FYB1 569 aa9.51□□□□□ -0.89
ATXN3-239ENST00000556315 HS6ST3Q8IZP7 471 aa9.51□□□□□ -0.89
ATXN3-239ENST00000556315 ZNF687Q8N1G0 1237 aa9.49□□□□□ -0.89
ATXN3-239ENST00000556315 THOC2Q8NI27 1593 aaKnown RBP9.47□□□□□ -0.89
ATXN3-239ENST00000556315 LAMC3Q9Y6N6 1575 aa9.47□□□□□ -0.89
ATXN3-239ENST00000556315 SMARCA4P51532 1647 aa9.47□□□□□ -0.89
ATXN3-239ENST00000556315 SLC34A2O95436 690 aa9.47□□□□□ -0.89
ATXN3-239ENST00000556315 KHSRPQ92945 711 aaKnown RBP eCLIP9.47□□□□□ -0.89
ATXN3-239ENST00000556315 CADPSQ9ULU8 1353 aa9.46□□□□□ -0.9
ATXN3-239ENST00000556315 ZNF316A6NFI3 1004 aaPredicted RBP9.45□□□□□ -0.9
ATXN3-239ENST00000556315 TMC2Q8TDI7 906 aa9.44□□□□□ -0.9
ATXN3-239ENST00000556315 BAZ1AQ9NRL2 1556 aaPredicted RBP9.44□□□□□ -0.9
ATXN3-239ENST00000556315 CHGAP10645 457 aaKnown RBP9.41□□□□□ -0.9
ATXN3-239ENST00000556315 PCDHGA4Q9Y5G9 962 aa9.41□□□□□ -0.9
ATXN3-239ENST00000556315 PEG3Q9GZU2 1588 aa9.41□□□□□ -0.9
ATXN3-239ENST00000556315 NUDT7P0C024 238 aa9.4□□□□□ -0.9
ATXN3-239ENST00000556315 MRC2Q9UBG0 1479 aa9.4□□□□□ -0.91
ATXN3-239ENST00000556315 NKX1-1Q15270 411 aaPredicted RBP9.38□□□□□ -0.91
ATXN3-239ENST00000556315 FOXK1P85037 733 aa9.37□□□□□ -0.91
ATXN3-239ENST00000556315 GPHNQ9NQX3 736 aaPredicted RBP9.36□□□□□ -0.91
ATXN3-239ENST00000556315 LHX6Q9UPM6 363 aa9.36□□□□□ -0.91
ATXN3-239ENST00000556315 KDM4FA0A1W2PPD8 638 aa9.35□□□□□ -0.91
ATXN3-239ENST00000556315 MROH2BQ7Z745 1585 aa9.35□□□□□ -0.91
ATXN3-239ENST00000556315 PTCD2Q8WV60 388 aaKnown RBP9.35□□□□□ -0.91
ATXN3-239ENST00000556315 WDR62O43379 1518 aa9.35□□□□□ -0.91
ATXN3-239ENST00000556315 KIF21AQ7Z4S6 1674 aa9.34□□□□□ -0.91
ATXN3-239ENST00000556315 PTGER2P43116 358 aa9.33□□□□□ -0.92
ATXN3-239ENST00000556315 PLPP6Q8IY26 295 aa9.33□□□□□ -0.92
ATXN3-239ENST00000556315 RNF166Q96A37 237 aaPredicted RBP9.33□□□□□ -0.92
ATXN3-239ENST00000556315 PBX2P40425 430 aa9.32□□□□□ -0.92
ATXN3-239ENST00000556315 POTEEQ6S8J3 1075 aa9.32□□□□□ -0.92
ATXN3-239ENST00000556315 RYDENQ9NUL5 291 aaKnown RBP9.32□□□□□ -0.92
ATXN3-239ENST00000556315 MYT1LQ9UL68 1186 aa9.32□□□□□ -0.92
ATXN3-239ENST00000556315 LSM11P83369 360 aaKnown RBP eCLIP9.31□□□□□ -0.92
ATXN3-239ENST00000556315 DSG2Q14126 1118 aa9.31□□□□□ -0.92
ATXN3-239ENST00000556315 CEP164Q9UPV0 1460 aa9.3□□□□□ -0.92
ATXN3-239ENST00000556315 ANKRD13DQ6ZTN6 518 aa9.3□□□□□ -0.92
ATXN3-239ENST00000556315 PSDA5PKW4 1024 aaPredicted RBP9.29□□□□□ -0.92
ATXN3-239ENST00000556315 FANCD2Q9BXW9 1451 aa9.28□□□□□ -0.92
ATXN3-239ENST00000556315 CRISPLD2Q9H0B8 497 aa9.27□□□□□ -0.93
ATXN3-239ENST00000556315 CYB5RLQ6IPT4 315 aa9.26□□□□□ -0.93
ATXN3-239ENST00000556315 AXIN2Q9Y2T1 843 aa9.25□□□□□ -0.93
ATXN3-239ENST00000556315 CFTRP13569 1480 aa9.25□□□□□ -0.93
ATXN3-239ENST00000556315 GTPBP6O43824 516 aaPredicted RBP9.24□□□□□ -0.93
ATXN3-239ENST00000556315 TBC1D12O60347 775 aa9.24□□□□□ -0.93
ATXN3-239ENST00000556315 ARHGAP33O14559 1287 aa9.23□□□□□ -0.93
ATXN3-239ENST00000556315 OXER1Q8TDS5 423 aa9.23□□□□□ -0.93
ATXN3-239ENST00000556315 NCKAP5LQ9HCH0 1330 aa9.21□□□□□ -0.94
ATXN3-239ENST00000556315 URB2Q14146 1524 aaKnown RBP9.21□□□□□ -0.94
ATXN3-239ENST00000556315 PPP1R15BQ5SWA1 713 aa9.2□□□□□ -0.94
ATXN3-239ENST00000556315 PDE4AP27815 886 aa9.19□□□□□ -0.94
ATXN3-239ENST00000556315 PPP4R3BQ5MIZ7 849 aa9.18□□□□□ -0.94
ATXN3-239ENST00000556315 ADGRD1Q6QNK2 874 aa9.18□□□□□ -0.94
ATXN3-239ENST00000556315 RIMBP3CA6NJZ7 1639 aa9.17□□□□□ -0.94
ATXN3-239ENST00000556315 RIMBP3BA6NNM3 1639 aa9.17□□□□□ -0.94
ATXN3-239ENST00000556315 RIMBP3Q9UFD9 1639 aa9.17□□□□□ -0.94
ATXN3-239ENST00000556315 ARHGEF11O15085 1522 aa9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms