RNA–Protein interactions for RNA: ENST00000556063.1

TDP1-214, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 1 (best)

Gene TDP1, Length 1,076 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-214ENST00000556063 PHLDB1Q86UU1 1377 aa11.79□□□□□ -0.52
TDP1-214ENST00000556063 ARAP3Q8WWN8 1544 aa11.79□□□□□ -0.52
TDP1-214ENST00000556063 CFDP1Q9UEE9 299 aaPredicted RBP11.78□□□□□ -0.52
TDP1-214ENST00000556063 ITSN2Q9NZM3 1697 aa11.78□□□□□ -0.52
TDP1-214ENST00000556063 NEO1Q92859 1461 aa11.77□□□□□ -0.52
TDP1-214ENST00000556063 ARHGAP5Q13017 1502 aa11.77□□□□□ -0.52
TDP1-214ENST00000556063 GPATCH8Q9UKJ3 1502 aaKnown RBP11.77□□□□□ -0.52
TDP1-214ENST00000556063 CFAP74Q9C0B2 1584 aa11.77□□□□□ -0.53
TDP1-214ENST00000556063 FANCAO15360 1455 aa11.76□□□□□ -0.53
TDP1-214ENST00000556063 PREX2Q70Z35 1606 aa11.76□□□□□ -0.53
TDP1-214ENST00000556063 CDC42BPAQ5VT25 1732 aa11.76□□□□□ -0.53
TDP1-214ENST00000556063 PPARGC1BQ86YN6 1023 aaKnown RBP11.75□□□□□ -0.53
TDP1-214ENST00000556063 ZNF777Q9ULD5 760 aaPredicted RBP11.75□□□□□ -0.53
TDP1-214ENST00000556063 PPRC1Q5VV67 1664 aaKnown RBP11.75□□□□□ -0.53
TDP1-214ENST00000556063 MYOM3Q5VTT5 1437 aa11.74□□□□□ -0.53
TDP1-214ENST00000556063 CDC42BPBQ9Y5S2 1711 aa11.74□□□□□ -0.53
TDP1-214ENST00000556063 AKNAQ7Z591 1439 aa11.73□□□□□ -0.53
TDP1-214ENST00000556063 PLEKHH2Q8IVE3 1493 aa11.73□□□□□ -0.53
TDP1-214ENST00000556063 MIA2Q96PC5 1412 aa11.73□□□□□ -0.53
TDP1-214ENST00000556063 ADGRL1O94910 1474 aa11.71□□□□□ -0.53
TDP1-214ENST00000556063 DENND4BO75064 1496 aaPredicted RBP11.7□□□□□ -0.54
TDP1-214ENST00000556063 SCAPERQ9BY12 1400 aa11.69□□□□□ -0.54
TDP1-214ENST00000556063 KDM6BO15054 1643 aa11.69□□□□□ -0.54
TDP1-214ENST00000556063 RSPH4AQ5TD94 716 aa11.69□□□□□ -0.54
TDP1-214ENST00000556063 FGD6Q6ZV73 1430 aa11.69□□□□□ -0.54
TDP1-214ENST00000556063 KIAA1107Q9UPP5 1409 aa11.69□□□□□ -0.54
TDP1-214ENST00000556063 SAMD9LQ8IVG5 1584 aa11.67□□□□□ -0.54
TDP1-214ENST00000556063 ABCC1P33527 1531 aa11.66□□□□□ -0.54
TDP1-214ENST00000556063 ZNF644Q9H582 1327 aaPredicted RBP11.66□□□□□ -0.54
TDP1-214ENST00000556063 CAMSAP2Q08AD1 1489 aa11.66□□□□□ -0.54
TDP1-214ENST00000556063 ZNF518AQ6AHZ1 1483 aa11.65□□□□□ -0.54
TDP1-214ENST00000556063 PTPN23Q9H3S7 1636 aa11.65□□□□□ -0.54
TDP1-214ENST00000556063 RAPGEF3O95398 923 aa11.65□□□□□ -0.54
TDP1-214ENST00000556063 HNRNPMP52272 730 aaKnown RBP eCLIP11.65□□□□□ -0.54
TDP1-214ENST00000556063 FAM50AQ14320 339 aaKnown RBP11.65□□□□□ -0.54
TDP1-214ENST00000556063 MYT1LQ9UL68 1186 aa11.65□□□□□ -0.54
TDP1-214ENST00000556063 POGZQ7Z3K3 1410 aa11.64□□□□□ -0.55
TDP1-214ENST00000556063 TSPY4P0CV99 314 aa11.64□□□□□ -0.55
TDP1-214ENST00000556063 TSPY10P0CW01 314 aa11.64□□□□□ -0.55
TDP1-214ENST00000556063 SYCP2Q9BX26 1530 aa11.64□□□□□ -0.55
TDP1-214ENST00000556063 TCOF1Q13428 1488 aaKnown RBP11.63□□□□□ -0.55
TDP1-214ENST00000556063 COL17A1Q9UMD9 1497 aaPredicted RBP11.63□□□□□ -0.55
TDP1-214ENST00000556063 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.63□□□□□ -0.55
TDP1-214ENST00000556063 TRAPPC8Q9Y2L5 1435 aa11.62□□□□□ -0.55
TDP1-214ENST00000556063 ARHGEF12Q9NZN5 1544 aa11.62□□□□□ -0.55
TDP1-214ENST00000556063 AFAP1Q8N556 730 aa11.62□□□□□ -0.55
TDP1-214ENST00000556063 RICTORQ6R327 1708 aa11.62□□□□□ -0.55
TDP1-214ENST00000556063 CCDC141Q6ZP82 1450 aa11.62□□□□□ -0.55
TDP1-214ENST00000556063 ARHGEF5Q12774 1597 aa11.62□□□□□ -0.55
TDP1-214ENST00000556063 SPAG9O60271 1321 aaKnown RBP11.61□□□□□ -0.55
TDP1-214ENST00000556063 RRBP1Q9P2E9 1410 aaKnown RBP11.61□□□□□ -0.55
TDP1-214ENST00000556063 MAGI2Q86UL8 1455 aa11.61□□□□□ -0.55
TDP1-214ENST00000556063 MBD5Q9P267 1494 aa11.61□□□□□ -0.55
TDP1-214ENST00000556063 ZMYM4Q5VZL5 1548 aa11.6□□□□□ -0.55
TDP1-214ENST00000556063 KDM5CP41229 1560 aa11.59□□□□□ -0.55
TDP1-214ENST00000556063 MLH3Q9UHC1 1453 aa11.58□□□□□ -0.56
TDP1-214ENST00000556063 PPP6R1Q9UPN7 881 aa11.58□□□□□ -0.56
TDP1-214ENST00000556063 RTEL1-TNFRSF6BF6WH68 1400 aa11.58□□□□□ -0.56
TDP1-214ENST00000556063 FRMPD1Q5SYB0 1578 aa11.58□□□□□ -0.56
TDP1-214ENST00000556063 HECW2Q9P2P5 1572 aa11.58□□□□□ -0.56
TDP1-214ENST00000556063 DNMT1P26358 1616 aaKnown RBP11.57□□□□□ -0.56
TDP1-214ENST00000556063 DAPK1P53355 1430 aa11.57□□□□□ -0.56
TDP1-214ENST00000556063 ZFYVE16Q7Z3T8 1539 aa11.56□□□□□ -0.56
TDP1-214ENST00000556063 ABCC5O15440 1437 aa11.56□□□□□ -0.56
TDP1-214ENST00000556063 C9orf84Q5VXU9 1444 aa11.56□□□□□ -0.56
TDP1-214ENST00000556063 SHANK2Q9UPX8 1470 aa11.56□□□□□ -0.56
TDP1-214ENST00000556063 ATP7AQ04656 1500 aa11.55□□□□□ -0.56
TDP1-214ENST00000556063 ITGAEP38570 1179 aa11.55□□□□□ -0.56
TDP1-214ENST00000556063 ANKRD30AQ9BXX3 1397 aa11.54□□□□□ -0.56
TDP1-214ENST00000556063 MAST1Q9Y2H9 1570 aa11.54□□□□□ -0.56
TDP1-214ENST00000556063 KIDINS220Q9ULH0 1771 aa11.54□□□□□ -0.56
TDP1-214ENST00000556063 INO80Q9ULG1 1556 aaPredicted RBP11.54□□□□□ -0.56
TDP1-214ENST00000556063 CROCC2H7BZ55 1655 aa11.53□□□□□ -0.56
TDP1-214ENST00000556063 ATP10AO60312 1499 aa11.53□□□□□ -0.56
TDP1-214ENST00000556063 CHIC2Q9UKJ5 165 aa11.53□□□□□ -0.56
TDP1-214ENST00000556063 ARHGEF40Q8TER5 1519 aa11.53□□□□□ -0.56
TDP1-214ENST00000556063 YEATS2Q9ULM3 1422 aa11.52□□□□□ -0.56
TDP1-214ENST00000556063 ADRA2BP18089 450 aa11.51□□□□□ -0.57
TDP1-214ENST00000556063 ROCK1Q13464 1354 aa11.51□□□□□ -0.57
TDP1-214ENST00000556063 DIP2CQ9Y2E4 1556 aa11.5□□□□□ -0.57
TDP1-214ENST00000556063 ADGBQ8N7X0 1667 aa11.5□□□□□ -0.57
TDP1-214ENST00000556063 RRP7BPQ9NSQ0 103 aa11.5□□□□□ -0.57
TDP1-214ENST00000556063 ARID4BQ4LE39 1312 aaPredicted RBP11.5□□□□□ -0.57
TDP1-214ENST00000556063 ADGRL2O95490 1459 aa11.5□□□□□ -0.57
TDP1-214ENST00000556063 A2MP01023 1474 aa11.5□□□□□ -0.57
TDP1-214ENST00000556063 PLXNC1O60486 1568 aa11.5□□□□□ -0.57
TDP1-214ENST00000556063 KIF15Q9NS87 1388 aa11.49□□□□□ -0.57
TDP1-214ENST00000556063 NCOA1Q15788 1441 aa11.49□□□□□ -0.57
TDP1-214ENST00000556063 ABCA6Q8N139 1617 aa11.49□□□□□ -0.57
TDP1-214ENST00000556063 TRIM26Q12899 539 aaPredicted RBP11.48□□□□□ -0.57
TDP1-214ENST00000556063 DHX29Q7Z478 1369 aaKnown RBP11.48□□□□□ -0.57
TDP1-214ENST00000556063 DUOX2Q9NRD8 1548 aa11.48□□□□□ -0.57
TDP1-214ENST00000556063 REREQ9P2R6 1566 aa11.48□□□□□ -0.57
TDP1-214ENST00000556063 PTPRKQ15262 1439 aa11.47□□□□□ -0.57
TDP1-214ENST00000556063 AGLP35573 1532 aa11.46□□□□□ -0.57
TDP1-214ENST00000556063 ERBINQ96RT1 1412 aa11.44□□□□□ -0.58
TDP1-214ENST00000556063 KIF3BO15066 747 aa11.44□□□□□ -0.58
TDP1-214ENST00000556063 ANKRD50Q9ULJ7 1429 aa11.43□□□□□ -0.58
TDP1-214ENST00000556063 ACIN1Q9UKV3 1341 aaKnown RBP11.43□□□□□ -0.58
TDP1-214ENST00000556063 ESF1Q9H501 851 aaKnown RBP11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms