RNA–Protein interactions for RNA: ENST00000554805.6

SYNE2-213, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 3,481 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-213ENST00000554805 B4GALNT3Q6L9W6 998 aa13□□□□□ -0.33
SYNE2-213ENST00000554805 MAGI3Q5TCQ9 1506 aa12.99□□□□□ -0.33
SYNE2-213ENST00000554805 EPRSP07814 1512 aaKnown RBP12.99□□□□□ -0.33
SYNE2-213ENST00000554805 CFDP1Q9UEE9 299 aaPredicted RBP12.97□□□□□ -0.33
SYNE2-213ENST00000554805 THOC2Q8NI27 1593 aaKnown RBP12.96□□□□□ -0.33
SYNE2-213ENST00000554805 KIF7Q2M1P5 1343 aa12.96□□□□□ -0.33
SYNE2-213ENST00000554805 ABCA5Q8WWZ7 1642 aa12.96□□□□□ -0.33
SYNE2-213ENST00000554805 MIA2Q96PC5 1412 aa12.96□□□□□ -0.34
SYNE2-213ENST00000554805 MRC2Q9UBG0 1479 aa12.95□□□□□ -0.34
SYNE2-213ENST00000554805 HECW1Q76N89 1606 aa12.95□□□□□ -0.34
SYNE2-213ENST00000554805 KDM5BQ9UGL1 1544 aa12.95□□□□□ -0.34
SYNE2-213ENST00000554805 TCOF1Q13428 1488 aaKnown RBP12.95□□□□□ -0.34
SYNE2-213ENST00000554805 MSH5O43196 834 aa12.94□□□□□ -0.34
SYNE2-213ENST00000554805 LRRIQ1Q96JM4 1722 aa12.94□□□□□ -0.34
SYNE2-213ENST00000554805 ANKRD30BQ9BXX2 1392 aa12.94□□□□□ -0.34
SYNE2-213ENST00000554805 KDM6BO15054 1643 aa12.93□□□□□ -0.34
SYNE2-213ENST00000554805 ERICH6BQ5W0A0 696 aa12.93□□□□□ -0.34
SYNE2-213ENST00000554805 PKD2Q13563 968 aa12.92□□□□□ -0.34
SYNE2-213ENST00000554805 KDM2AQ9Y2K7 1162 aa12.92□□□□□ -0.34
SYNE2-213ENST00000554805 ZBED9Q6R2W3 1325 aa12.92□□□□□ -0.34
SYNE2-213ENST00000554805 DENND4BO75064 1496 aaPredicted RBP12.92□□□□□ -0.34
SYNE2-213ENST00000554805 DAPK1P53355 1430 aa12.92□□□□□ -0.34
SYNE2-213ENST00000554805 NCOA1Q15788 1441 aa12.92□□□□□ -0.34
SYNE2-213ENST00000554805 AKNAQ7Z591 1439 aa12.91□□□□□ -0.34
SYNE2-213ENST00000554805 IQGAP2Q13576 1575 aa12.91□□□□□ -0.34
SYNE2-213ENST00000554805 ARHGEF11O15085 1522 aa12.91□□□□□ -0.34
SYNE2-213ENST00000554805 ABCC5O15440 1437 aa12.9□□□□□ -0.34
SYNE2-213ENST00000554805 TMC1Q8TDI8 760 aa12.89□□□□□ -0.35
SYNE2-213ENST00000554805 FANCIQ9NVI1 1328 aa12.89□□□□□ -0.35
SYNE2-213ENST00000554805 RPRD2Q5VT52 1461 aaKnown RBP12.88□□□□□ -0.35
SYNE2-213ENST00000554805 ROCK1Q13464 1354 aa12.87□□□□□ -0.35
SYNE2-213ENST00000554805 CCDC136Q96JN2 1154 aa12.87□□□□□ -0.35
SYNE2-213ENST00000554805 CARD11Q9BXL7 1154 aa12.87□□□□□ -0.35
SYNE2-213ENST00000554805 BCL11AQ9H165 835 aa12.86□□□□□ -0.35
SYNE2-213ENST00000554805 GCC2Q8IWJ2 1684 aa12.86□□□□□ -0.35
SYNE2-213ENST00000554805 USP47Q96K76 1375 aa12.86□□□□□ -0.35
SYNE2-213ENST00000554805 SALL2Q9Y467 1007 aaPredicted RBP12.86□□□□□ -0.35
SYNE2-213ENST00000554805 PRG4Q92954 1404 aaPredicted RBP12.85□□□□□ -0.35
SYNE2-213ENST00000554805 WDR62O43379 1518 aa12.85□□□□□ -0.35
SYNE2-213ENST00000554805 PLEKHD1A6NEE1 506 aa12.83□□□□□ -0.35
SYNE2-213ENST00000554805 TSPY4P0CV99 314 aa12.83□□□□□ -0.35
SYNE2-213ENST00000554805 TSPY10P0CW01 314 aa12.83□□□□□ -0.35
SYNE2-213ENST00000554805 JPH4Q96JJ6 628 aa12.83□□□□□ -0.36
SYNE2-213ENST00000554805 NUDCQ9Y266 331 aa12.83□□□□□ -0.36
SYNE2-213ENST00000554805 TARBP1Q13395 1621 aaKnown RBP12.83□□□□□ -0.36
SYNE2-213ENST00000554805 NUP155O75694 1391 aa12.82□□□□□ -0.36
SYNE2-213ENST00000554805 ANKRD30AQ9BXX3 1397 aa12.82□□□□□ -0.36
SYNE2-213ENST00000554805 TEX14Q8IWB6 1497 aa12.82□□□□□ -0.36
SYNE2-213ENST00000554805 DCAF11Q8TEB1 546 aa12.81□□□□□ -0.36
SYNE2-213ENST00000554805 ADAMTS12P58397 1594 aa12.8□□□□□ -0.36
SYNE2-213ENST00000554805 KIAA0586Q9BVV6 1533 aa12.8□□□□□ -0.36
SYNE2-213ENST00000554805 NUP153P49790 1475 aaKnown RBP12.8□□□□□ -0.36
SYNE2-213ENST00000554805 PRKCSHP14314 528 aaPredicted RBP12.8□□□□□ -0.36
SYNE2-213ENST00000554805 KIAA1107Q9UPP5 1409 aa12.79□□□□□ -0.36
SYNE2-213ENST00000554805 ST20-MTHFSA0A0A6YYL1 179 aa12.79□□□□□ -0.36
SYNE2-213ENST00000554805 TROQ12816 1431 aaPredicted RBP12.79□□□□□ -0.36
SYNE2-213ENST00000554805 SPATA31E1Q6ZUB1 1445 aa12.79□□□□□ -0.36
SYNE2-213ENST00000554805 IFT140Q96RY7 1462 aa12.79□□□□□ -0.36
SYNE2-213ENST00000554805 RGL3Q3MIN7 710 aa12.78□□□□□ -0.36
SYNE2-213ENST00000554805 PBRM1Q86U86 1689 aa12.78□□□□□ -0.36
SYNE2-213ENST00000554805 NBR1Q14596 966 aa12.78□□□□□ -0.36
SYNE2-213ENST00000554805 CAMSAP2Q08AD1 1489 aa12.77□□□□□ -0.36
SYNE2-213ENST00000554805 PZPP20742 1482 aa12.77□□□□□ -0.37
SYNE2-213ENST00000554805 HNRNPMP52272 730 aaKnown RBP eCLIP12.76□□□□□ -0.37
SYNE2-213ENST00000554805 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.76□□□□□ -0.37
SYNE2-213ENST00000554805 ANKRD50Q9ULJ7 1429 aa12.76□□□□□ -0.37
SYNE2-213ENST00000554805 PLB1Q6P1J6 1458 aa12.76□□□□□ -0.37
SYNE2-213ENST00000554805 DNMT1P26358 1616 aaKnown RBP12.76□□□□□ -0.37
SYNE2-213ENST00000554805 DISP1Q96F81 1524 aa12.76□□□□□ -0.37
SYNE2-213ENST00000554805 ANP32AP39687 249 aaKnown RBP12.76□□□□□ -0.37
SYNE2-213ENST00000554805 SMG6Q86US8 1419 aaKnown RBP12.75□□□□□ -0.37
SYNE2-213ENST00000554805 PNISRQ8TF01 805 aaKnown RBP12.75□□□□□ -0.37
SYNE2-213ENST00000554805 DHX29Q7Z478 1369 aaKnown RBP12.75□□□□□ -0.37
SYNE2-213ENST00000554805 NOP58Q9Y2X3 529 aaKnown RBP12.75□□□□□ -0.37
SYNE2-213ENST00000554805 KIAA0556O60303 1618 aa12.74□□□□□ -0.37
SYNE2-213ENST00000554805 NPM2Q86SE8 214 aaKnown RBP12.74□□□□□ -0.37
SYNE2-213ENST00000554805 GPATCH8Q9UKJ3 1502 aaKnown RBP12.73□□□□□ -0.37
SYNE2-213ENST00000554805 CARMIL2Q6F5E8 1435 aa12.73□□□□□ -0.37
SYNE2-213ENST00000554805 RAPGEF6Q8TEU7 1601 aa12.73□□□□□ -0.37
SYNE2-213ENST00000554805 ROCK2O75116 1388 aaKnown RBP12.72□□□□□ -0.37
SYNE2-213ENST00000554805 KIF15Q9NS87 1388 aa12.72□□□□□ -0.37
SYNE2-213ENST00000554805 MYT1LQ9UL68 1186 aa12.72□□□□□ -0.37
SYNE2-213ENST00000554805 GRIN2AQ12879 1464 aa12.72□□□□□ -0.37
SYNE2-213ENST00000554805 ARID4BQ4LE39 1312 aaPredicted RBP12.72□□□□□ -0.37
SYNE2-213ENST00000554805 MYBBP1AQ9BQG0 1328 aaKnown RBP12.7□□□□□ -0.38
SYNE2-213ENST00000554805 RALBP1Q15311 655 aa12.7□□□□□ -0.38
SYNE2-213ENST00000554805 ZBTB47Q9UFB7 747 aaPredicted RBP12.7□□□□□ -0.38
SYNE2-213ENST00000554805 CC2D1BQ5T0F9 858 aaKnown RBP12.69□□□□□ -0.38
SYNE2-213ENST00000554805 PAK3O75914 559 aaPredicted RBP12.69□□□□□ -0.38
SYNE2-213ENST00000554805 C9orf84Q5VXU9 1444 aa12.68□□□□□ -0.38
SYNE2-213ENST00000554805 DEKP35659 375 aaKnown RBP12.68□□□□□ -0.38
SYNE2-213ENST00000554805 RTL5Q5HYW3 569 aaPredicted RBP12.68□□□□□ -0.38
SYNE2-213ENST00000554805 EXOC6Q8TAG9 804 aa12.68□□□□□ -0.38
SYNE2-213ENST00000554805 RCAN3Q9UKA8 241 aa12.68□□□□□ -0.38
SYNE2-213ENST00000554805 EIF4G3O43432 1585 aaKnown RBP12.67□□□□□ -0.38
SYNE2-213ENST00000554805 RRP1P56182 461 aaKnown RBP12.66□□□□□ -0.38
SYNE2-213ENST00000554805 NLRP13Q86W25 1043 aa12.66□□□□□ -0.38
SYNE2-213ENST00000554805 KTN1Q86UP2 1357 aaKnown RBP12.66□□□□□ -0.38
SYNE2-213ENST00000554805 NBPF1Q3BBV0 1214 aa12.65□□□□□ -0.38
SYNE2-213ENST00000554805 BRD4O60885 1362 aaPredicted RBP12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms