RNA–Protein interactions for RNA: ENST00000550331.1

NEK3-201, Transcript of NIMA related kinase 3, humanhuman

TSL 2

Gene NEK3, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-201ENST00000550331 ABCC2Q92887 1545 aa13.15□□□□□ -0.3
NEK3-201ENST00000550331 FARP1Q9Y4F1 1045 aaPredicted RBP13.15□□□□□ -0.3
NEK3-201ENST00000550331 ASXL2Q76L83 1435 aa13.14□□□□□ -0.31
NEK3-201ENST00000550331 UHRF1BP1LA0JNW5 1464 aa13.14□□□□□ -0.31
NEK3-201ENST00000550331 PLB1Q6P1J6 1458 aa13.14□□□□□ -0.31
NEK3-201ENST00000550331 DISP1Q96F81 1524 aa13.13□□□□□ -0.31
NEK3-201ENST00000550331 HECW2Q9P2P5 1572 aa13.13□□□□□ -0.31
NEK3-201ENST00000550331 UGGT2Q9NYU1 1516 aa13.13□□□□□ -0.31
NEK3-201ENST00000550331 MKRN4PQ13434 485 aaPredicted RBP13.12□□□□□ -0.31
NEK3-201ENST00000550331 SLC4A1APQ9BWU0 796 aaKnown RBP13.12□□□□□ -0.31
NEK3-201ENST00000550331 UACAQ9BZF9 1416 aa13.11□□□□□ -0.31
NEK3-201ENST00000550331 ZNF579Q8NAF0 562 aaKnown RBP13.09□□□□□ -0.31
NEK3-201ENST00000550331 MAP3K4Q9Y6R4 1608 aa13.09□□□□□ -0.31
NEK3-201ENST00000550331 COL17A1Q9UMD9 1497 aaPredicted RBP13.08□□□□□ -0.32
NEK3-201ENST00000550331 KIAA0556O60303 1618 aa13.07□□□□□ -0.32
NEK3-201ENST00000550331 KDM5BQ9UGL1 1544 aa13.07□□□□□ -0.32
NEK3-201ENST00000550331 TEX14Q8IWB6 1497 aa13.06□□□□□ -0.32
NEK3-201ENST00000550331 EPRSP07814 1512 aaKnown RBP13.06□□□□□ -0.32
NEK3-201ENST00000550331 ZCCHC11Q5TAX3 1644 aaKnown RBP13.04□□□□□ -0.32
NEK3-201ENST00000550331 GOLGA3Q08378 1498 aa13.02□□□□□ -0.33
NEK3-201ENST00000550331 PRXQ9BXM0 1461 aa13.02□□□□□ -0.33
NEK3-201ENST00000550331 POTEB2H3BUK9 544 aa13.01□□□□□ -0.33
NEK3-201ENST00000550331 CTTNBP2Q8WZ74 1663 aa13□□□□□ -0.33
NEK3-201ENST00000550331 WDR7Q9Y4E6 1490 aa12.97□□□□□ -0.33
NEK3-201ENST00000550331 ZRANB1Q9UGI0 708 aa12.96□□□□□ -0.33
NEK3-201ENST00000550331 ABCA8O94911 1581 aa12.95□□□□□ -0.34
NEK3-201ENST00000550331 CFAP43Q8NDM7 1665 aa12.95□□□□□ -0.34
NEK3-201ENST00000550331 KIF21BO75037 1637 aa12.95□□□□□ -0.34
NEK3-201ENST00000550331 GALR2O43603 387 aaPredicted RBP12.93□□□□□ -0.34
NEK3-201ENST00000550331 FBXO41Q8TF61 875 aa12.93□□□□□ -0.34
NEK3-201ENST00000550331 CD109Q6YHK3 1445 aa12.92□□□□□ -0.34
NEK3-201ENST00000550331 MAGI3Q5TCQ9 1506 aa12.92□□□□□ -0.34
NEK3-201ENST00000550331 ZBTB22O15209 634 aa12.89□□□□□ -0.35
NEK3-201ENST00000550331 FAM9AQ8IZU1 332 aaPredicted RBP12.89□□□□□ -0.35
NEK3-201ENST00000550331 CSRNP3Q8WYN3 585 aa12.89□□□□□ -0.35
NEK3-201ENST00000550331 KCNH8Q96L42 1107 aa12.89□□□□□ -0.35
NEK3-201ENST00000550331 EEA1Q15075 1411 aa12.88□□□□□ -0.35
NEK3-201ENST00000550331 SAMD9Q5K651 1589 aa12.86□□□□□ -0.35
NEK3-201ENST00000550331 ATP10BO94823 1461 aa12.84□□□□□ -0.35
NEK3-201ENST00000550331 ADAMTSL3P82987 1691 aa12.83□□□□□ -0.35
NEK3-201ENST00000550331 ARAP3Q8WWN8 1544 aa12.83□□□□□ -0.36
NEK3-201ENST00000550331 P3H3Q8IVL6 736 aa12.82□□□□□ -0.36
NEK3-201ENST00000550331 PTPRMP28827 1452 aa12.82□□□□□ -0.36
NEK3-201ENST00000550331 RAPGEF6Q8TEU7 1601 aa12.8□□□□□ -0.36
NEK3-201ENST00000550331 ABCA9Q8IUA7 1624 aa12.79□□□□□ -0.36
NEK3-201ENST00000550331 PHLDB1Q86UU1 1377 aa12.79□□□□□ -0.36
NEK3-201ENST00000550331 ARID3CA6NKF2 412 aa12.78□□□□□ -0.36
NEK3-201ENST00000550331 BCORL1Q5H9F3 1711 aa12.78□□□□□ -0.36
NEK3-201ENST00000550331 PCF11O94913 1555 aaKnown RBP12.77□□□□□ -0.36
NEK3-201ENST00000550331 MADDQ8WXG6 1647 aa12.77□□□□□ -0.36
NEK3-201ENST00000550331 NUP153P49790 1475 aaKnown RBP12.77□□□□□ -0.37
NEK3-201ENST00000550331 MAMSTRQ6ZN01 415 aa12.76□□□□□ -0.37
NEK3-201ENST00000550331 EFCAB5A4FU69 1503 aa12.75□□□□□ -0.37
NEK3-201ENST00000550331 FHOD3Q2V2M9 1422 aa12.75□□□□□ -0.37
NEK3-201ENST00000550331 LCE2DQ5TA82 110 aaPredicted RBP12.75□□□□□ -0.37
NEK3-201ENST00000550331 NEO1Q92859 1461 aa12.75□□□□□ -0.37
NEK3-201ENST00000550331 LMTK3Q96Q04 1460 aa12.74□□□□□ -0.37
NEK3-201ENST00000550331 ARID4BQ4LE39 1312 aaPredicted RBP12.74□□□□□ -0.37
NEK3-201ENST00000550331 RAPGEF3O95398 923 aa12.74□□□□□ -0.37
NEK3-201ENST00000550331 PELP1Q8IZL8 1130 aaKnown RBP12.74□□□□□ -0.37
NEK3-201ENST00000550331 RIMS1Q86UR5 1692 aaKnown RBP12.73□□□□□ -0.37
NEK3-201ENST00000550331 FRMPD1Q5SYB0 1578 aa12.73□□□□□ -0.37
NEK3-201ENST00000550331 PAK3O75914 559 aaPredicted RBP12.71□□□□□ -0.37
NEK3-201ENST00000550331 RANGAP1P46060 587 aaPredicted RBP12.71□□□□□ -0.37
NEK3-201ENST00000550331 METRNQ9UJH8 293 aa12.71□□□□□ -0.37
NEK3-201ENST00000550331 PLEKHD1A6NEE1 506 aa12.69□□□□□ -0.38
NEK3-201ENST00000550331 CREBZFQ9NS37 354 aa12.69□□□□□ -0.38
NEK3-201ENST00000550331 ARHGEF40Q8TER5 1519 aa12.68□□□□□ -0.38
NEK3-201ENST00000550331 SLC39A7Q92504 469 aa12.68□□□□□ -0.38
NEK3-201ENST00000550331 POTEJP0CG39 1038 aa12.67□□□□□ -0.38
NEK3-201ENST00000550331 C7P10643 843 aa12.67□□□□□ -0.38
NEK3-201ENST00000550331 HSPA2P54652 639 aa12.67□□□□□ -0.38
NEK3-201ENST00000550331 FAM163AQ96GL9 167 aaPredicted RBP12.67□□□□□ -0.38
NEK3-201ENST00000550331 PHF12Q96QT6 1004 aa12.67□□□□□ -0.38
NEK3-201ENST00000550331 RICTORQ6R327 1708 aa12.66□□□□□ -0.38
NEK3-201ENST00000550331 ASTLQ6HA08 431 aaPredicted RBP12.65□□□□□ -0.38
NEK3-201ENST00000550331 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.65□□□□□ -0.38
NEK3-201ENST00000550331 FANCAO15360 1455 aa12.65□□□□□ -0.38
NEK3-201ENST00000550331 CFAP74Q9C0B2 1584 aa12.64□□□□□ -0.39
NEK3-201ENST00000550331 FMN1Q68DA7 1419 aa12.63□□□□□ -0.39
NEK3-201ENST00000550331 CERKQ8TCT0 537 aa12.63□□□□□ -0.39
NEK3-201ENST00000550331 DENND4BO75064 1496 aaPredicted RBP12.63□□□□□ -0.39
NEK3-201ENST00000550331 AKNAQ7Z591 1439 aa12.62□□□□□ -0.39
NEK3-201ENST00000550331 FER1L4A9Z1Z3 1794 aa12.62□□□□□ -0.39
NEK3-201ENST00000550331 UBTFP17480 764 aaKnown RBP12.62□□□□□ -0.39
NEK3-201ENST00000550331 SCUBE2Q9NQ36 999 aa12.62□□□□□ -0.39
NEK3-201ENST00000550331 CDK13Q14004 1512 aaKnown RBP12.62□□□□□ -0.39
NEK3-201ENST00000550331 POGZQ7Z3K3 1410 aa12.62□□□□□ -0.39
NEK3-201ENST00000550331 TTC37Q6PGP7 1564 aa12.61□□□□□ -0.39
NEK3-201ENST00000550331 SIGLEC1Q9BZZ2 1709 aa12.61□□□□□ -0.39
NEK3-201ENST00000550331 ARHGAP35Q9NRY4 1499 aa12.6□□□□□ -0.39
NEK3-201ENST00000550331 HECW1Q76N89 1606 aa12.6□□□□□ -0.39
NEK3-201ENST00000550331 ZMYM4Q5VZL5 1548 aa12.6□□□□□ -0.39
NEK3-201ENST00000550331 DISP3Q9P2K9 1392 aa12.58□□□□□ -0.4
NEK3-201ENST00000550331 ZFYVE16Q7Z3T8 1539 aa12.58□□□□□ -0.4
NEK3-201ENST00000550331 PLCH2O75038 1416 aa12.58□□□□□ -0.4
NEK3-201ENST00000550331 MAGI2Q86UL8 1455 aa12.58□□□□□ -0.4
NEK3-201ENST00000550331 ATMINO43313 823 aaPredicted RBP12.57□□□□□ -0.4
NEK3-201ENST00000550331 MLECQ14165 292 aa12.57□□□□□ -0.4
NEK3-201ENST00000550331 PREX1Q8TCU6 1659 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms