RNA–Protein interactions for RNA: ENST00000549678.1

PTCH1-219, Transcript of patched 1, humanhuman

TSL 4

Gene PTCH1, Length 578 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-219ENST00000549678 ADAMTSL3P82987 1691 aa11.58□□□□□ -0.56
PTCH1-219ENST00000549678 POGZQ7Z3K3 1410 aa11.57□□□□□ -0.56
PTCH1-219ENST00000549678 HECW2Q9P2P5 1572 aa11.57□□□□□ -0.56
PTCH1-219ENST00000549678 ARID4BQ4LE39 1312 aaPredicted RBP11.57□□□□□ -0.56
PTCH1-219ENST00000549678 SCAPERQ9BY12 1400 aa11.56□□□□□ -0.56
PTCH1-219ENST00000549678 MYO5CQ9NQX4 1742 aa11.56□□□□□ -0.56
PTCH1-219ENST00000549678 PTPRMP28827 1452 aa11.56□□□□□ -0.56
PTCH1-219ENST00000549678 ZFYVE16Q7Z3T8 1539 aa11.55□□□□□ -0.56
PTCH1-219ENST00000549678 BCORL1Q5H9F3 1711 aa11.55□□□□□ -0.56
PTCH1-219ENST00000549678 ZNF518AQ6AHZ1 1483 aa11.52□□□□□ -0.56
PTCH1-219ENST00000549678 ARHGAP5Q13017 1502 aa11.52□□□□□ -0.57
PTCH1-219ENST00000549678 YEATS2Q9ULM3 1422 aa11.52□□□□□ -0.57
PTCH1-219ENST00000549678 MTUS2Q5JR59 1369 aa11.51□□□□□ -0.57
PTCH1-219ENST00000549678 ATP10AO60312 1499 aa11.51□□□□□ -0.57
PTCH1-219ENST00000549678 MADDQ8WXG6 1647 aa11.5□□□□□ -0.57
PTCH1-219ENST00000549678 C9orf84Q5VXU9 1444 aa11.5□□□□□ -0.57
PTCH1-219ENST00000549678 ILDR1Q86SU0 546 aaPredicted RBP11.49□□□□□ -0.57
PTCH1-219ENST00000549678 VPS8Q8N3P4 1428 aa11.49□□□□□ -0.57
PTCH1-219ENST00000549678 KDM5CP41229 1560 aa11.49□□□□□ -0.57
PTCH1-219ENST00000549678 EHBP1L1Q8N3D4 1523 aa11.48□□□□□ -0.57
PTCH1-219ENST00000549678 PREX2Q70Z35 1606 aa11.47□□□□□ -0.57
PTCH1-219ENST00000549678 MLH3Q9UHC1 1453 aa11.47□□□□□ -0.57
PTCH1-219ENST00000549678 APLP2Q06481 763 aa11.47□□□□□ -0.57
PTCH1-219ENST00000549678 CDC42BPAQ5VT25 1732 aa11.46□□□□□ -0.58
PTCH1-219ENST00000549678 CDC42BPBQ9Y5S2 1711 aa11.46□□□□□ -0.58
PTCH1-219ENST00000549678 REREQ9P2R6 1566 aa11.45□□□□□ -0.58
PTCH1-219ENST00000549678 AFAP1Q8N556 730 aa11.45□□□□□ -0.58
PTCH1-219ENST00000549678 RIMS1Q86UR5 1692 aaKnown RBP11.45□□□□□ -0.58
PTCH1-219ENST00000549678 ITSN2Q9NZM3 1697 aa11.45□□□□□ -0.58
PTCH1-219ENST00000549678 TIAM1Q13009 1591 aa11.45□□□□□ -0.58
PTCH1-219ENST00000549678 ABCC1P33527 1531 aa11.45□□□□□ -0.58
PTCH1-219ENST00000549678 SUPT6HQ7KZ85 1726 aaKnown RBP11.44□□□□□ -0.58
PTCH1-219ENST00000549678 MYT1LQ9UL68 1186 aa11.44□□□□□ -0.58
PTCH1-219ENST00000549678 ARHGEF12Q9NZN5 1544 aa11.44□□□□□ -0.58
PTCH1-219ENST00000549678 LMTK3Q96Q04 1460 aa11.44□□□□□ -0.58
PTCH1-219ENST00000549678 PLEKHH2Q8IVE3 1493 aa11.43□□□□□ -0.58
PTCH1-219ENST00000549678 CCNB3Q8WWL7 1395 aa11.42□□□□□ -0.58
PTCH1-219ENST00000549678 FER1L4A9Z1Z3 1794 aa11.42□□□□□ -0.58
PTCH1-219ENST00000549678 MLECQ14165 292 aa11.42□□□□□ -0.58
PTCH1-219ENST00000549678 ZNF777Q9ULD5 760 aaPredicted RBP11.42□□□□□ -0.58
PTCH1-219ENST00000549678 KIAA1107Q9UPP5 1409 aa11.42□□□□□ -0.58
PTCH1-219ENST00000549678 DIP2CQ9Y2E4 1556 aa11.41□□□□□ -0.58
PTCH1-219ENST00000549678 SETD1BQ9UPS6 1966 aaKnown RBP11.41□□□□□ -0.58
PTCH1-219ENST00000549678 AGLP35573 1532 aa11.41□□□□□ -0.58
PTCH1-219ENST00000549678 GPATCH8Q9UKJ3 1502 aaKnown RBP11.41□□□□□ -0.58
PTCH1-219ENST00000549678 SIGLEC1Q9BZZ2 1709 aa11.41□□□□□ -0.58
PTCH1-219ENST00000549678 TRAPPC8Q9Y2L5 1435 aa11.41□□□□□ -0.58
PTCH1-219ENST00000549678 CFDP1Q9UEE9 299 aaPredicted RBP11.39□□□□□ -0.59
PTCH1-219ENST00000549678 ABCA6Q8N139 1617 aa11.38□□□□□ -0.59
PTCH1-219ENST00000549678 SPAG9O60271 1321 aaKnown RBP11.37□□□□□ -0.59
PTCH1-219ENST00000549678 CNTLNQ9NXG0 1405 aa11.37□□□□□ -0.59
PTCH1-219ENST00000549678 NCOA2Q15596 1464 aa11.37□□□□□ -0.59
PTCH1-219ENST00000549678 LRRC9Q6ZRR7 1453 aa11.37□□□□□ -0.59
PTCH1-219ENST00000549678 SAMD9LQ8IVG5 1584 aa11.37□□□□□ -0.59
PTCH1-219ENST00000549678 MAP3K1Q13233 1512 aa11.36□□□□□ -0.59
PTCH1-219ENST00000549678 ESF1Q9H501 851 aaKnown RBP11.36□□□□□ -0.59
PTCH1-219ENST00000549678 KIDINS220Q9ULH0 1771 aa11.36□□□□□ -0.59
PTCH1-219ENST00000549678 SYCP2Q9BX26 1530 aa11.35□□□□□ -0.59
PTCH1-219ENST00000549678 PLPPR3Q6T4P5 718 aa11.34□□□□□ -0.59
PTCH1-219ENST00000549678 PREX1Q8TCU6 1659 aa11.33□□□□□ -0.6
PTCH1-219ENST00000549678 HNRNPMP52272 730 aaKnown RBP eCLIP11.33□□□□□ -0.6
PTCH1-219ENST00000549678 HSPA2P54652 639 aa11.33□□□□□ -0.6
PTCH1-219ENST00000549678 FBXO41Q8TF61 875 aa11.33□□□□□ -0.6
PTCH1-219ENST00000549678 UHRF1BP1Q6BDS2 1440 aa11.33□□□□□ -0.6
PTCH1-219ENST00000549678 ATP7AQ04656 1500 aa11.32□□□□□ -0.6
PTCH1-219ENST00000549678 RSPH4AQ5TD94 716 aa11.32□□□□□ -0.6
PTCH1-219ENST00000549678 PPP6R1Q9UPN7 881 aa11.32□□□□□ -0.6
PTCH1-219ENST00000549678 CEBPAP49715 358 aaPredicted RBP11.31□□□□□ -0.6
PTCH1-219ENST00000549678 DMRT2Q9Y5R5 561 aa11.31□□□□□ -0.6
PTCH1-219ENST00000549678 RTEL1-TNFRSF6BF6WH68 1400 aa11.31□□□□□ -0.6
PTCH1-219ENST00000549678 INO80Q9ULG1 1556 aaPredicted RBP11.31□□□□□ -0.6
PTCH1-219ENST00000549678 PLXNC1O60486 1568 aa11.3□□□□□ -0.6
PTCH1-219ENST00000549678 NPATQ14207 1427 aa11.3□□□□□ -0.6
PTCH1-219ENST00000549678 KANK4Q5T7N3 995 aaPredicted RBP11.3□□□□□ -0.6
PTCH1-219ENST00000549678 A2MP01023 1474 aa11.3□□□□□ -0.6
PTCH1-219ENST00000549678 CAMSAP2Q08AD1 1489 aa11.3□□□□□ -0.6
PTCH1-219ENST00000549678 MBD5Q9P267 1494 aa11.3□□□□□ -0.6
PTCH1-219ENST00000549678 MROH2AA6NES4 1674 aa11.28□□□□□ -0.6
PTCH1-219ENST00000549678 C3P01024 1663 aa11.28□□□□□ -0.6
PTCH1-219ENST00000549678 MYOM3Q5VTT5 1437 aa11.27□□□□□ -0.6
PTCH1-219ENST00000549678 ZMYM3Q14202 1370 aa11.27□□□□□ -0.61
PTCH1-219ENST00000549678 ADGBQ8N7X0 1667 aa11.27□□□□□ -0.61
PTCH1-219ENST00000549678 CCDC141Q6ZP82 1450 aa11.26□□□□□ -0.61
PTCH1-219ENST00000549678 ZNF644Q9H582 1327 aaPredicted RBP11.26□□□□□ -0.61
PTCH1-219ENST00000549678 DHX29Q7Z478 1369 aaKnown RBP11.25□□□□□ -0.61
PTCH1-219ENST00000549678 FAM135AQ9P2D6 1515 aa11.25□□□□□ -0.61
PTCH1-219ENST00000549678 PTPRTO14522 1441 aa11.24□□□□□ -0.61
PTCH1-219ENST00000549678 MIA2Q96PC5 1412 aa11.24□□□□□ -0.61
PTCH1-219ENST00000549678 PTPN23Q9H3S7 1636 aa11.24□□□□□ -0.61
PTCH1-219ENST00000549678 TSPY4P0CV99 314 aa11.23□□□□□ -0.61
PTCH1-219ENST00000549678 TSPY10P0CW01 314 aa11.23□□□□□ -0.61
PTCH1-219ENST00000549678 GGT6Q6P531 493 aa11.23□□□□□ -0.61
PTCH1-219ENST00000549678 CERKQ8TCT0 537 aa11.23□□□□□ -0.61
PTCH1-219ENST00000549678 ARHGEF5Q12774 1597 aa11.23□□□□□ -0.61
PTCH1-219ENST00000549678 STRCQ7RTU9 1775 aa11.21□□□□□ -0.61
PTCH1-219ENST00000549678 NCOA1Q15788 1441 aa11.21□□□□□ -0.61
PTCH1-219ENST00000549678 PTPRKQ15262 1439 aa11.2□□□□□ -0.62
PTCH1-219ENST00000549678 FGD6Q6ZV73 1430 aa11.2□□□□□ -0.62
PTCH1-219ENST00000549678 PPARGC1BQ86YN6 1023 aaKnown RBP11.2□□□□□ -0.62
PTCH1-219ENST00000549678 CLTCQ00610 1675 aaKnown RBP11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms