RNA–Protein interactions for RNA: ENST00000549162.5

SCAF11-212, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 1 (best) BASIC

Gene SCAF11, Length 3,934 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-212ENST00000549162 IFT172Q9UG01 1749 aa8.41□□□□□ -1.06
SCAF11-212ENST00000549162 NUP153P49790 1475 aaKnown RBP8.41□□□□□ -1.06
SCAF11-212ENST00000549162 FRMPD1Q5SYB0 1578 aa8.4□□□□□ -1.06
SCAF11-212ENST00000549162 ZBTB22O15209 634 aa8.4□□□□□ -1.07
SCAF11-212ENST00000549162 ABCC1P33527 1531 aa8.39□□□□□ -1.07
SCAF11-212ENST00000549162 AGLP35573 1532 aa8.39□□□□□ -1.07
SCAF11-212ENST00000549162 KIAA1210Q9ULL0 1709 aa8.38□□□□□ -1.07
SCAF11-212ENST00000549162 ABCA6Q8N139 1617 aa8.38□□□□□ -1.07
SCAF11-212ENST00000549162 NCOA2Q15596 1464 aa8.38□□□□□ -1.07
SCAF11-212ENST00000549162 KIAA1107Q9UPP5 1409 aa8.37□□□□□ -1.07
SCAF11-212ENST00000549162 LRRC9Q6ZRR7 1453 aa8.36□□□□□ -1.07
SCAF11-212ENST00000549162 TEX14Q8IWB6 1497 aa8.36□□□□□ -1.07
SCAF11-212ENST00000549162 PLEKHH2Q8IVE3 1493 aa8.35□□□□□ -1.07
SCAF11-212ENST00000549162 PIK3C2BO00750 1634 aa8.35□□□□□ -1.07
SCAF11-212ENST00000549162 NEO1Q92859 1461 aa8.35□□□□□ -1.07
SCAF11-212ENST00000549162 ATP10AO60312 1499 aa8.34□□□□□ -1.07
SCAF11-212ENST00000549162 ZNF142P52746 1687 aaPredicted RBP8.34□□□□□ -1.07
SCAF11-212ENST00000549162 RTEL1-TNFRSF6BF6WH68 1400 aa8.33□□□□□ -1.08
SCAF11-212ENST00000549162 HRCP23327 699 aa8.33□□□□□ -1.08
SCAF11-212ENST00000549162 RIMS1Q86UR5 1692 aaKnown RBP8.33□□□□□ -1.08
SCAF11-212ENST00000549162 PRDM15P57071 1507 aaPredicted RBP8.33□□□□□ -1.08
SCAF11-212ENST00000549162 CLIP1P30622 1438 aa8.33□□□□□ -1.08
SCAF11-212ENST00000549162 PRAG1Q86YV5 1406 aa8.32□□□□□ -1.08
SCAF11-212ENST00000549162 SAMD9LQ8IVG5 1584 aa8.32□□□□□ -1.08
SCAF11-212ENST00000549162 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP8.32□□□□□ -1.08
SCAF11-212ENST00000549162 ROCK1Q13464 1354 aa8.32□□□□□ -1.08
SCAF11-212ENST00000549162 CARMIL2Q6F5E8 1435 aa8.31□□□□□ -1.08
SCAF11-212ENST00000549162 PTPRGP23470 1445 aa8.31□□□□□ -1.08
SCAF11-212ENST00000549162 PLB1Q6P1J6 1458 aa8.3□□□□□ -1.08
SCAF11-212ENST00000549162 TTC37Q6PGP7 1564 aa8.3□□□□□ -1.08
SCAF11-212ENST00000549162 KDM6BO15054 1643 aa8.3□□□□□ -1.08
SCAF11-212ENST00000549162 CEP152O94986 1710 aa8.29□□□□□ -1.08
SCAF11-212ENST00000549162 DCAF8L2P0C7V8 631 aa8.29□□□□□ -1.08
SCAF11-212ENST00000549162 MADDQ8WXG6 1647 aa8.28□□□□□ -1.08
SCAF11-212ENST00000549162 UACAQ9BZF9 1416 aa8.28□□□□□ -1.08
SCAF11-212ENST00000549162 ERCC6L2Q5T890 1561 aa8.28□□□□□ -1.08
SCAF11-212ENST00000549162 TROQ12816 1431 aaPredicted RBP8.27□□□□□ -1.09
SCAF11-212ENST00000549162 TET3O43151 1660 aa8.27□□□□□ -1.09
SCAF11-212ENST00000549162 TMEM131LA2VDJ0 1609 aa8.27□□□□□ -1.09
SCAF11-212ENST00000549162 ARHGEF40Q8TER5 1519 aa8.27□□□□□ -1.09
SCAF11-212ENST00000549162 ZNF518AQ6AHZ1 1483 aa8.27□□□□□ -1.09
SCAF11-212ENST00000549162 USP54Q70EL1 1684 aa8.27□□□□□ -1.09
SCAF11-212ENST00000549162 KIDINS220Q9ULH0 1771 aa8.27□□□□□ -1.09
SCAF11-212ENST00000549162 ZFYVE16Q7Z3T8 1539 aa8.26□□□□□ -1.09
SCAF11-212ENST00000549162 UGGT1Q9NYU2 1555 aa8.25□□□□□ -1.09
SCAF11-212ENST00000549162 PPP4R3CPQ6ZMV5 832 aa8.25□□□□□ -1.09
SCAF11-212ENST00000549162 MYO3AQ8NEV4 1616 aa8.25□□□□□ -1.09
SCAF11-212ENST00000549162 ATP10BO94823 1461 aa8.25□□□□□ -1.09
SCAF11-212ENST00000549162 HECW2Q9P2P5 1572 aa8.25□□□□□ -1.09
SCAF11-212ENST00000549162 MLH3Q9UHC1 1453 aa8.24□□□□□ -1.09
SCAF11-212ENST00000549162 KNDC1Q76NI1 1749 aa8.24□□□□□ -1.09
SCAF11-212ENST00000549162 NCBP3Q53F19 620 aaKnown RBP8.24□□□□□ -1.09
SCAF11-212ENST00000549162 MBD5Q9P267 1494 aa8.22□□□□□ -1.09
SCAF11-212ENST00000549162 FHOD3Q2V2M9 1422 aa8.22□□□□□ -1.09
SCAF11-212ENST00000549162 FER1L4A9Z1Z3 1794 aa8.22□□□□□ -1.09
SCAF11-212ENST00000549162 SETD1AO15047 1707 aaKnown RBP8.21□□□□□ -1.09
SCAF11-212ENST00000549162 EFCAB6Q5THR3 1501 aa8.19□□□□□ -1.1
SCAF11-212ENST00000549162 DUOX2Q9NRD8 1548 aa8.19□□□□□ -1.1
SCAF11-212ENST00000549162 ERBINQ96RT1 1412 aa8.19□□□□□ -1.1
SCAF11-212ENST00000549162 NPM3O75607 178 aaKnown RBP8.19□□□□□ -1.1
SCAF11-212ENST00000549162 SPHKAPQ2M3C7 1700 aa8.19□□□□□ -1.1
SCAF11-212ENST00000549162 ADAMTSL3P82987 1691 aa8.18□□□□□ -1.1
SCAF11-212ENST00000549162 MYOM3Q5VTT5 1437 aa8.18□□□□□ -1.1
SCAF11-212ENST00000549162 DIP2CQ9Y2E4 1556 aa8.18□□□□□ -1.1
SCAF11-212ENST00000549162 GPATCH8Q9UKJ3 1502 aaKnown RBP8.17□□□□□ -1.1
SCAF11-212ENST00000549162 RPRD2Q5VT52 1461 aaKnown RBP8.17□□□□□ -1.1
SCAF11-212ENST00000549162 PLCH2O75038 1416 aa8.17□□□□□ -1.1
SCAF11-212ENST00000549162 ARHGEF12Q9NZN5 1544 aa8.15□□□□□ -1.1
SCAF11-212ENST00000549162 ARHGAP31Q2M1Z3 1444 aa8.15□□□□□ -1.11
SCAF11-212ENST00000549162 PRG4Q92954 1404 aaPredicted RBP8.14□□□□□ -1.11
SCAF11-212ENST00000549162 HFM1A2PYH4 1435 aa8.14□□□□□ -1.11
SCAF11-212ENST00000549162 CLSPNQ9HAW4 1339 aa8.14□□□□□ -1.11
SCAF11-212ENST00000549162 CAMSAP1Q5T5Y3 1602 aa8.14□□□□□ -1.11
SCAF11-212ENST00000549162 NRXN1Q9ULB1 1477 aa8.13□□□□□ -1.11
SCAF11-212ENST00000549162 TDRD9Q8NDG6 1382 aaKnown RBP8.12□□□□□ -1.11
SCAF11-212ENST00000549162 CLTCQ00610 1675 aaKnown RBP8.12□□□□□ -1.11
SCAF11-212ENST00000549162 SIGLEC1Q9BZZ2 1709 aa8.12□□□□□ -1.11
SCAF11-212ENST00000549162 PRKCSHP14314 528 aaPredicted RBP8.12□□□□□ -1.11
SCAF11-212ENST00000549162 SPATA31D1Q6ZQQ2 1576 aa8.12□□□□□ -1.11
SCAF11-212ENST00000549162 LRRC7Q96NW7 1537 aa8.11□□□□□ -1.11
SCAF11-212ENST00000549162 SETBP1Q9Y6X0 1596 aa8.11□□□□□ -1.11
SCAF11-212ENST00000549162 FGD6Q6ZV73 1430 aa8.11□□□□□ -1.11
SCAF11-212ENST00000549162 PPLO60437 1756 aa8.11□□□□□ -1.11
SCAF11-212ENST00000549162 TRPM2O94759 1503 aa8.1□□□□□ -1.11
SCAF11-212ENST00000549162 SYNMO15061 1565 aa8.1□□□□□ -1.11
SCAF11-212ENST00000549162 E9PCH4 1651 aa8.1□□□□□ -1.11
SCAF11-212ENST00000549162 TRIM41Q8WV44 630 aa8.09□□□□□ -1.11
SCAF11-212ENST00000549162 DIP2AQ14689 1571 aa8.09□□□□□ -1.11
SCAF11-212ENST00000549162 ATP7AQ04656 1500 aa8.08□□□□□ -1.12
SCAF11-212ENST00000549162 IQGAP1P46940 1657 aa8.08□□□□□ -1.12
SCAF11-212ENST00000549162 CCDC141Q6ZP82 1450 aa8.08□□□□□ -1.12
SCAF11-212ENST00000549162 POGZQ7Z3K3 1410 aa8.07□□□□□ -1.12
SCAF11-212ENST00000549162 USP32Q8NFA0 1604 aa8.07□□□□□ -1.12
SCAF11-212ENST00000549162 PREX1Q8TCU6 1659 aa8.07□□□□□ -1.12
SCAF11-212ENST00000549162 PTPRTO14522 1441 aa8.07□□□□□ -1.12
SCAF11-212ENST00000549162 FANCAO15360 1455 aa8.06□□□□□ -1.12
SCAF11-212ENST00000549162 DENND4BO75064 1496 aaPredicted RBP8.06□□□□□ -1.12
SCAF11-212ENST00000549162 CDK13Q14004 1512 aaKnown RBP8.05□□□□□ -1.12
SCAF11-212ENST00000549162 FOXD1Q16676 465 aa8.04□□□□□ -1.12
SCAF11-212ENST00000549162 NWD1Q149M9 1564 aa8.03□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms