RNA–Protein interactions for RNA: ENST00000547672.5

PTCH1-215, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 881 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-215ENST00000547672 ZCCHC11Q5TAX3 1644 aaKnown RBP19.69■□□□□ 0.74
PTCH1-215ENST00000547672 CAMSAP2Q08AD1 1489 aa19.68■□□□□ 0.74
PTCH1-215ENST00000547672 NAIPQ13075 1403 aa19.68■□□□□ 0.74
PTCH1-215ENST00000547672 PTPRKQ15262 1439 aa19.68■□□□□ 0.74
PTCH1-215ENST00000547672 ZNF777Q9ULD5 760 aaPredicted RBP19.67■□□□□ 0.74
PTCH1-215ENST00000547672 CDC42BPAQ5VT25 1732 aa19.67■□□□□ 0.74
PTCH1-215ENST00000547672 TSPY4P0CV99 314 aa19.66■□□□□ 0.74
PTCH1-215ENST00000547672 TSPY10P0CW01 314 aa19.66■□□□□ 0.74
PTCH1-215ENST00000547672 ABCC5O15440 1437 aa19.66■□□□□ 0.74
PTCH1-215ENST00000547672 PLEKHH2Q8IVE3 1493 aa19.66■□□□□ 0.74
PTCH1-215ENST00000547672 TIMELESSQ9UNS1 1208 aa19.64■□□□□ 0.73
PTCH1-215ENST00000547672 ZNF644Q9H582 1327 aaPredicted RBP19.63■□□□□ 0.73
PTCH1-215ENST00000547672 KCNH8Q96L42 1107 aa19.63■□□□□ 0.73
PTCH1-215ENST00000547672 CHIC2Q9UKJ5 165 aa19.63■□□□□ 0.73
PTCH1-215ENST00000547672 ANKRD30AQ9BXX3 1397 aa19.62■□□□□ 0.73
PTCH1-215ENST00000547672 EFCAB2Q5VUJ9 269 aa19.62■□□□□ 0.73
PTCH1-215ENST00000547672 GCC2Q8IWJ2 1684 aa19.62■□□□□ 0.73
PTCH1-215ENST00000547672 RRP7BPQ9NSQ0 103 aa19.61■□□□□ 0.73
PTCH1-215ENST00000547672 PREX2Q70Z35 1606 aa19.61■□□□□ 0.73
PTCH1-215ENST00000547672 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP19.6■□□□□ 0.73
PTCH1-215ENST00000547672 SHANK2Q9UPX8 1470 aa19.6■□□□□ 0.73
PTCH1-215ENST00000547672 ARHGEF5Q12774 1597 aa19.59■□□□□ 0.73
PTCH1-215ENST00000547672 WDR7Q9Y4E6 1490 aa19.59■□□□□ 0.73
PTCH1-215ENST00000547672 MYO5CQ9NQX4 1742 aa19.59■□□□□ 0.73
PTCH1-215ENST00000547672 PLCH2O75038 1416 aa19.59■□□□□ 0.73
PTCH1-215ENST00000547672 KIAA1107Q9UPP5 1409 aa19.59■□□□□ 0.73
PTCH1-215ENST00000547672 ADGRL2O95490 1459 aa19.58■□□□□ 0.72
PTCH1-215ENST00000547672 ARHGAP5Q13017 1502 aa19.57■□□□□ 0.72
PTCH1-215ENST00000547672 ARAP3Q8WWN8 1544 aa19.57■□□□□ 0.72
PTCH1-215ENST00000547672 ADGBQ8N7X0 1667 aa19.56■□□□□ 0.72
PTCH1-215ENST00000547672 NCOA1Q15788 1441 aa19.55■□□□□ 0.72
PTCH1-215ENST00000547672 CDC42BPBQ9Y5S2 1711 aa19.55■□□□□ 0.72
PTCH1-215ENST00000547672 CROCC2H7BZ55 1655 aa19.53■□□□□ 0.72
PTCH1-215ENST00000547672 TRIM52Q96A61 297 aa19.53■□□□□ 0.72
PTCH1-215ENST00000547672 CCDC141Q6ZP82 1450 aa19.52■□□□□ 0.72
PTCH1-215ENST00000547672 TTC37Q6PGP7 1564 aa19.52■□□□□ 0.71
PTCH1-215ENST00000547672 C9orf84Q5VXU9 1444 aa19.51■□□□□ 0.71
PTCH1-215ENST00000547672 ASXL2Q76L83 1435 aa19.51■□□□□ 0.71
PTCH1-215ENST00000547672 HNRNPMP52272 730 aaKnown RBP eCLIP19.5■□□□□ 0.71
PTCH1-215ENST00000547672 MBD5Q9P267 1494 aa19.49■□□□□ 0.71
PTCH1-215ENST00000547672 SAMD9LQ8IVG5 1584 aa19.48■□□□□ 0.71
PTCH1-215ENST00000547672 MAPKBP1O60336 1514 aa19.47■□□□□ 0.71
PTCH1-215ENST00000547672 ABCA9Q8IUA7 1624 aa19.46■□□□□ 0.71
PTCH1-215ENST00000547672 MAST1Q9Y2H9 1570 aa19.44■□□□□ 0.7
PTCH1-215ENST00000547672 MPHOSPH9Q99550 1183 aa19.44■□□□□ 0.7
PTCH1-215ENST00000547672 ANKRD50Q9ULJ7 1429 aa19.43■□□□□ 0.7
PTCH1-215ENST00000547672 ZNF316A6NFI3 1004 aaPredicted RBP19.4■□□□□ 0.7
PTCH1-215ENST00000547672 KIF15Q9NS87 1388 aa19.4■□□□□ 0.7
PTCH1-215ENST00000547672 SYCP2Q9BX26 1530 aa19.4■□□□□ 0.7
PTCH1-215ENST00000547672 RIMBP3CA6NJZ7 1639 aa19.4■□□□□ 0.7
PTCH1-215ENST00000547672 RIMBP3BA6NNM3 1639 aa19.4■□□□□ 0.7
PTCH1-215ENST00000547672 RIMBP3Q9UFD9 1639 aa19.4■□□□□ 0.7
PTCH1-215ENST00000547672 RTEL1-TNFRSF6BF6WH68 1400 aa19.38■□□□□ 0.69
PTCH1-215ENST00000547672 FANCAO15360 1455 aa19.38■□□□□ 0.69
PTCH1-215ENST00000547672 NEUROD1Q13562 356 aa19.38■□□□□ 0.69
PTCH1-215ENST00000547672 CYB5RLQ6IPT4 315 aa19.38■□□□□ 0.69
PTCH1-215ENST00000547672 SLC4A1APQ9BWU0 796 aaKnown RBP19.38■□□□□ 0.69
PTCH1-215ENST00000547672 CFAP74Q9C0B2 1584 aa19.36■□□□□ 0.69
PTCH1-215ENST00000547672 ABCC1P33527 1531 aa19.36■□□□□ 0.69
PTCH1-215ENST00000547672 TONSLQ96HA7 1378 aa19.35■□□□□ 0.69
PTCH1-215ENST00000547672 PLXNC1O60486 1568 aa19.35■□□□□ 0.69
PTCH1-215ENST00000547672 CD109Q6YHK3 1445 aa19.34■□□□□ 0.69
PTCH1-215ENST00000547672 SPAG9O60271 1321 aaKnown RBP19.34■□□□□ 0.69
PTCH1-215ENST00000547672 KDM6BO15054 1643 aa19.34■□□□□ 0.69
PTCH1-215ENST00000547672 SIN3AQ96ST3 1273 aa19.34■□□□□ 0.69
PTCH1-215ENST00000547672 DUOX2Q9NRD8 1548 aa19.32■□□□□ 0.68
PTCH1-215ENST00000547672 NUP155O75694 1391 aa19.3■□□□□ 0.68
PTCH1-215ENST00000547672 ERBINQ96RT1 1412 aa19.29■□□□□ 0.68
PTCH1-215ENST00000547672 PPP1R15AO75807 674 aaPredicted RBP19.29■□□□□ 0.68
PTCH1-215ENST00000547672 ARHGEF12Q9NZN5 1544 aa19.29■□□□□ 0.68
PTCH1-215ENST00000547672 ADGRL1O94910 1474 aa19.28■□□□□ 0.68
PTCH1-215ENST00000547672 SCAPERQ9BY12 1400 aa19.28■□□□□ 0.68
PTCH1-215ENST00000547672 KDM5DQ9BY66 1539 aa19.28■□□□□ 0.68
PTCH1-215ENST00000547672 NEO1Q92859 1461 aa19.27■□□□□ 0.67
PTCH1-215ENST00000547672 TRAPPC8Q9Y2L5 1435 aa19.26■□□□□ 0.67
PTCH1-215ENST00000547672 ANKRD30BQ9BXX2 1392 aa19.26■□□□□ 0.67
PTCH1-215ENST00000547672 GLI2P10070 1586 aa19.25■□□□□ 0.67
PTCH1-215ENST00000547672 PZPP20742 1482 aa19.25■□□□□ 0.67
PTCH1-215ENST00000547672 ZNF518AQ6AHZ1 1483 aa19.23■□□□□ 0.67
PTCH1-215ENST00000547672 PKD2Q13563 968 aa19.23■□□□□ 0.67
PTCH1-215ENST00000547672 AFAP1Q8N556 730 aa19.23■□□□□ 0.67
PTCH1-215ENST00000547672 MYT1LQ9UL68 1186 aa19.23■□□□□ 0.67
PTCH1-215ENST00000547672 DENND4BO75064 1496 aaPredicted RBP19.21■□□□□ 0.67
PTCH1-215ENST00000547672 UNC13BO14795 1591 aa19.19■□□□□ 0.66
PTCH1-215ENST00000547672 RPRD2Q5VT52 1461 aaKnown RBP19.18■□□□□ 0.66
PTCH1-215ENST00000547672 DIEXFQ68CQ4 756 aaKnown RBP19.18■□□□□ 0.66
PTCH1-215ENST00000547672 ATP7AQ04656 1500 aa19.18■□□□□ 0.66
PTCH1-215ENST00000547672 ZFYVE16Q7Z3T8 1539 aa19.17■□□□□ 0.66
PTCH1-215ENST00000547672 KANK1Q14678 1352 aa19.17■□□□□ 0.66
PTCH1-215ENST00000547672 DHX29Q7Z478 1369 aaKnown RBP19.16■□□□□ 0.66
PTCH1-215ENST00000547672 INO80Q9ULG1 1556 aaPredicted RBP19.15■□□□□ 0.66
PTCH1-215ENST00000547672 FAM135AQ9P2D6 1515 aa19.15■□□□□ 0.66
PTCH1-215ENST00000547672 MAP3K4Q9Y6R4 1608 aa19.14■□□□□ 0.66
PTCH1-215ENST00000547672 FAM69CQ0P6D2 419 aa19.14■□□□□ 0.65
PTCH1-215ENST00000547672 MLH3Q9UHC1 1453 aa19.14■□□□□ 0.65
PTCH1-215ENST00000547672 FOXD1Q16676 465 aa19.13■□□□□ 0.65
PTCH1-215ENST00000547672 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.13■□□□□ 0.65
PTCH1-215ENST00000547672 POGZQ7Z3K3 1410 aa19.13■□□□□ 0.65
PTCH1-215ENST00000547672 IQGAP3Q86VI3 1631 aa19.12■□□□□ 0.65
PTCH1-215ENST00000547672 TEX14Q8IWB6 1497 aa19.12■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms