RNA–Protein interactions for RNA: ENST00000545889.5

CLIP1-218, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5 BASIC

Gene CLIP1, Length 4,633 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-218ENST00000545889 FYCO1Q9BQS8 1478 aa11.7□□□□□ -0.54
CLIP1-218ENST00000545889 RGL3Q3MIN7 710 aa11.69□□□□□ -0.54
CLIP1-218ENST00000545889 MIER1Q8N108 512 aa11.69□□□□□ -0.54
CLIP1-218ENST00000545889 ADAMTS12P58397 1594 aa11.69□□□□□ -0.54
CLIP1-218ENST00000545889 HIRIP3Q9BW71 556 aaPredicted RBP11.69□□□□□ -0.54
CLIP1-218ENST00000545889 RAB3GAP2Q9H2M9 1393 aa11.69□□□□□ -0.54
CLIP1-218ENST00000545889 ABCA5Q8WWZ7 1642 aa11.68□□□□□ -0.54
CLIP1-218ENST00000545889 SETD5Q9C0A6 1442 aa11.68□□□□□ -0.54
CLIP1-218ENST00000545889 FAM69CQ0P6D2 419 aa11.67□□□□□ -0.54
CLIP1-218ENST00000545889 GGT6Q6P531 493 aa11.67□□□□□ -0.54
CLIP1-218ENST00000545889 NCOA2Q15596 1464 aa11.67□□□□□ -0.54
CLIP1-218ENST00000545889 RTN4Q9NQC3 1192 aaKnown RBP11.67□□□□□ -0.54
CLIP1-218ENST00000545889 SUPT16HQ9Y5B9 1047 aaKnown RBP11.67□□□□□ -0.54
CLIP1-218ENST00000545889 PCF11O94913 1555 aaKnown RBP11.66□□□□□ -0.54
CLIP1-218ENST00000545889 THOC2Q8NI27 1593 aaKnown RBP11.66□□□□□ -0.54
CLIP1-218ENST00000545889 LMOD2Q6P5Q4 547 aa11.65□□□□□ -0.54
CLIP1-218ENST00000545889 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.65□□□□□ -0.54
CLIP1-218ENST00000545889 FGD6Q6ZV73 1430 aa11.64□□□□□ -0.55
CLIP1-218ENST00000545889 UACAQ9BZF9 1416 aa11.64□□□□□ -0.55
CLIP1-218ENST00000545889 EPRSP07814 1512 aaKnown RBP11.64□□□□□ -0.55
CLIP1-218ENST00000545889 PBRM1Q86U86 1689 aa11.64□□□□□ -0.55
CLIP1-218ENST00000545889 RTL5Q5HYW3 569 aaPredicted RBP11.64□□□□□ -0.55
CLIP1-218ENST00000545889 SPAG9O60271 1321 aaKnown RBP11.64□□□□□ -0.55
CLIP1-218ENST00000545889 MYOM3Q5VTT5 1437 aa11.64□□□□□ -0.55
CLIP1-218ENST00000545889 TIAM1Q13009 1591 aa11.63□□□□□ -0.55
CLIP1-218ENST00000545889 NBR1Q14596 966 aa11.62□□□□□ -0.55
CLIP1-218ENST00000545889 KIF3BO15066 747 aa11.62□□□□□ -0.55
CLIP1-218ENST00000545889 ANKRD30AQ9BXX3 1397 aa11.62□□□□□ -0.55
CLIP1-218ENST00000545889 PKD2Q13563 968 aa11.61□□□□□ -0.55
CLIP1-218ENST00000545889 AFAP1Q8N556 730 aa11.61□□□□□ -0.55
CLIP1-218ENST00000545889 TROQ12816 1431 aaPredicted RBP11.6□□□□□ -0.55
CLIP1-218ENST00000545889 NUP155O75694 1391 aa11.6□□□□□ -0.55
CLIP1-218ENST00000545889 FKBP8Q14318 412 aa11.59□□□□□ -0.55
CLIP1-218ENST00000545889 HECW1Q76N89 1606 aa11.59□□□□□ -0.55
CLIP1-218ENST00000545889 MPHOSPH9Q99550 1183 aa11.59□□□□□ -0.55
CLIP1-218ENST00000545889 NUP160Q12769 1436 aa11.59□□□□□ -0.55
CLIP1-218ENST00000545889 DEKP35659 375 aaKnown RBP11.58□□□□□ -0.56
CLIP1-218ENST00000545889 ARXQ96QS3 562 aa11.58□□□□□ -0.56
CLIP1-218ENST00000545889 CTTNBP2Q8WZ74 1663 aa11.58□□□□□ -0.56
CLIP1-218ENST00000545889 AEBP2Q6ZN18 517 aaPredicted RBP11.57□□□□□ -0.56
CLIP1-218ENST00000545889 RSPH4AQ5TD94 716 aa11.57□□□□□ -0.56
CLIP1-218ENST00000545889 CEP170Q5SW79 1584 aa11.55□□□□□ -0.56
CLIP1-218ENST00000545889 ARHGEF11O15085 1522 aa11.54□□□□□ -0.56
CLIP1-218ENST00000545889 EHBP1L1Q8N3D4 1523 aa11.54□□□□□ -0.56
CLIP1-218ENST00000545889 UGGT2Q9NYU1 1516 aa11.54□□□□□ -0.56
CLIP1-218ENST00000545889 DDX10Q13206 875 aaKnown RBP11.54□□□□□ -0.56
CLIP1-218ENST00000545889 DISP1Q96F81 1524 aa11.54□□□□□ -0.56
CLIP1-218ENST00000545889 ARHGAP5Q13017 1502 aa11.54□□□□□ -0.56
CLIP1-218ENST00000545889 RBM19Q9Y4C8 960 aaKnown RBP11.53□□□□□ -0.56
CLIP1-218ENST00000545889 RRBP1Q9P2E9 1410 aaKnown RBP11.53□□□□□ -0.56
CLIP1-218ENST00000545889 SALL2Q9Y467 1007 aaPredicted RBP11.53□□□□□ -0.56
CLIP1-218ENST00000545889 KIAA0556O60303 1618 aa11.52□□□□□ -0.56
CLIP1-218ENST00000545889 NUP153P49790 1475 aaKnown RBP11.52□□□□□ -0.57
CLIP1-218ENST00000545889 NPHP1O15259 732 aa11.52□□□□□ -0.57
CLIP1-218ENST00000545889 RAPGEF3O95398 923 aa11.52□□□□□ -0.57
CLIP1-218ENST00000545889 TMC1Q8TDI8 760 aa11.52□□□□□ -0.57
CLIP1-218ENST00000545889 DCAF11Q8TEB1 546 aa11.52□□□□□ -0.57
CLIP1-218ENST00000545889 ATP10BO94823 1461 aa11.51□□□□□ -0.57
CLIP1-218ENST00000545889 DHX57Q6P158 1386 aaKnown RBP11.51□□□□□ -0.57
CLIP1-218ENST00000545889 KANK1Q14678 1352 aa11.51□□□□□ -0.57
CLIP1-218ENST00000545889 KIF15Q9NS87 1388 aa11.5□□□□□ -0.57
CLIP1-218ENST00000545889 WDR97A6NE52 1622 aa11.49□□□□□ -0.57
CLIP1-218ENST00000545889 WASHC2CQ9Y4E1 1318 aa11.48□□□□□ -0.57
CLIP1-218ENST00000545889 SUPT6HQ7KZ85 1726 aaKnown RBP11.48□□□□□ -0.57
CLIP1-218ENST00000545889 RAPGEF6Q8TEU7 1601 aa11.48□□□□□ -0.57
CLIP1-218ENST00000545889 HDGFP51858 240 aaKnown RBP11.47□□□□□ -0.57
CLIP1-218ENST00000545889 EIF4G2P78344 907 aaKnown RBP eCLIP11.47□□□□□ -0.57
CLIP1-218ENST00000545889 POGKQ9P215 609 aa11.47□□□□□ -0.57
CLIP1-218ENST00000545889 MIA2Q96PC5 1412 aa11.46□□□□□ -0.58
CLIP1-218ENST00000545889 SCAPERQ9BY12 1400 aa11.46□□□□□ -0.58
CLIP1-218ENST00000545889 CHD1O14646 1710 aa11.45□□□□□ -0.58
CLIP1-218ENST00000545889 WDR43Q15061 677 aaKnown RBP eCLIP11.45□□□□□ -0.58
CLIP1-218ENST00000545889 L3MBTL2Q969R5 705 aa11.45□□□□□ -0.58
CLIP1-218ENST00000545889 CARD11Q9BXL7 1154 aa11.45□□□□□ -0.58
CLIP1-218ENST00000545889 ANKRD50Q9ULJ7 1429 aa11.44□□□□□ -0.58
CLIP1-218ENST00000545889 PPM1GO15355 546 aaPredicted RBP11.44□□□□□ -0.58
CLIP1-218ENST00000545889 NUTM2DQ5VT03 806 aaPredicted RBP11.44□□□□□ -0.58
CLIP1-218ENST00000545889 MAP3K1Q13233 1512 aa11.44□□□□□ -0.58
CLIP1-218ENST00000545889 CD109Q6YHK3 1445 aa11.43□□□□□ -0.58
CLIP1-218ENST00000545889 C9orf84Q5VXU9 1444 aa11.43□□□□□ -0.58
CLIP1-218ENST00000545889 DAPK1P53355 1430 aa11.42□□□□□ -0.58
CLIP1-218ENST00000545889 ASXL2Q76L83 1435 aa11.42□□□□□ -0.58
CLIP1-218ENST00000545889 SAMD9Q5K651 1589 aa11.41□□□□□ -0.58
CLIP1-218ENST00000545889 GLIPR1L2Q4G1C9 344 aa11.4□□□□□ -0.58
CLIP1-218ENST00000545889 GPATCH8Q9UKJ3 1502 aaKnown RBP11.4□□□□□ -0.58
CLIP1-218ENST00000545889 ERCC6L2Q5T890 1561 aa11.4□□□□□ -0.58
CLIP1-218ENST00000545889 CAMSAP2Q08AD1 1489 aa11.4□□□□□ -0.58
CLIP1-218ENST00000545889 KIF14Q15058 1648 aa11.4□□□□□ -0.59
CLIP1-218ENST00000545889 ABCC5O15440 1437 aa11.39□□□□□ -0.59
CLIP1-218ENST00000545889 PTPN23Q9H3S7 1636 aa11.38□□□□□ -0.59
CLIP1-218ENST00000545889 HSP90AA1P07900 732 aaKnown RBP11.38□□□□□ -0.59
CLIP1-218ENST00000545889 SAFB2Q14151 953 aaKnown RBP eCLIP11.37□□□□□ -0.59
CLIP1-218ENST00000545889 PKNOX2Q96KN3 472 aa11.37□□□□□ -0.59
CLIP1-218ENST00000545889 NAIPQ13075 1403 aa11.37□□□□□ -0.59
CLIP1-218ENST00000545889 FAM9BQ8IZU0 186 aa11.37□□□□□ -0.59
CLIP1-218ENST00000545889 PTPRKQ15262 1439 aa11.36□□□□□ -0.59
CLIP1-218ENST00000545889 HFM1A2PYH4 1435 aa11.36□□□□□ -0.59
CLIP1-218ENST00000545889 TIMELESSQ9UNS1 1208 aa11.36□□□□□ -0.59
CLIP1-218ENST00000545889 ABCC2Q92887 1545 aa11.36□□□□□ -0.59
CLIP1-218ENST00000545889 CCDC9Q9Y3X0 531 aaKnown RBP11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms