RNA–Protein interactions for RNA: ENST00000545689.2

COL4A6-209, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,380 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-209ENST00000545689 U2SURPO15042 1029 aaKnown RBP16.06■□□□□ 0.16
COL4A6-209ENST00000545689 FHOD3Q2V2M9 1422 aa16.06■□□□□ 0.16
COL4A6-209ENST00000545689 TDRD9Q8NDG6 1382 aaKnown RBP16.05■□□□□ 0.16
COL4A6-209ENST00000545689 HSP90AB1P08238 724 aaKnown RBP16.04■□□□□ 0.16
COL4A6-209ENST00000545689 ZRSR1Q15695 479 aaKnown RBP16.04■□□□□ 0.16
COL4A6-209ENST00000545689 EFCAB2Q5VUJ9 269 aa16.04■□□□□ 0.16
COL4A6-209ENST00000545689 SENP3-EIF4A1A0A087X0R7 540 aa16.03■□□□□ 0.16
COL4A6-209ENST00000545689 DHX57Q6P158 1386 aaKnown RBP16.03■□□□□ 0.16
COL4A6-209ENST00000545689 PTMAP06454 111 aaKnown RBP16.03■□□□□ 0.16
COL4A6-209ENST00000545689 PHLDB1Q86UU1 1377 aa16.03■□□□□ 0.16
COL4A6-209ENST00000545689 HSCBQ8IWL3 235 aa16.02■□□□□ 0.16
COL4A6-209ENST00000545689 TNNT2P45379 298 aaPredicted RBP16.02■□□□□ 0.16
COL4A6-209ENST00000545689 TCERG1O14776 1098 aaKnown RBP16.02■□□□□ 0.15
COL4A6-209ENST00000545689 CALD1Q05682 793 aaKnown RBP16.02■□□□□ 0.15
COL4A6-209ENST00000545689 RBM19Q9Y4C8 960 aaKnown RBP16.02■□□□□ 0.15
COL4A6-209ENST00000545689 RCAN3Q9UKA8 241 aa16.01■□□□□ 0.15
COL4A6-209ENST00000545689 PDE3BQ13370 1112 aa16.01■□□□□ 0.15
COL4A6-209ENST00000545689 SENP3Q9H4L4 574 aaPredicted RBP16.01■□□□□ 0.15
COL4A6-209ENST00000545689 IPO8O15397 1037 aaKnown RBP16.01■□□□□ 0.15
COL4A6-209ENST00000545689 HDGFL2Q7Z4V5 671 aaPredicted RBP16■□□□□ 0.15
COL4A6-209ENST00000545689 SRPK2P78362 688 aaKnown RBP16■□□□□ 0.15
COL4A6-209ENST00000545689 L1TD1Q5T7N2 865 aaKnown RBP15.99■□□□□ 0.15
COL4A6-209ENST00000545689 CDK11BP21127 795 aaKnown RBP15.99■□□□□ 0.15
COL4A6-209ENST00000545689 PTMSP20962 102 aa15.99■□□□□ 0.15
COL4A6-209ENST00000545689 FOXD1Q16676 465 aa15.97■□□□□ 0.15
COL4A6-209ENST00000545689 MCCP23508 829 aa15.97■□□□□ 0.15
COL4A6-209ENST00000545689 L3MBTL2Q969R5 705 aa15.96■□□□□ 0.15
COL4A6-209ENST00000545689 KIF15Q9NS87 1388 aa15.96■□□□□ 0.14
COL4A6-209ENST00000545689 NLRP13Q86W25 1043 aa15.95■□□□□ 0.14
COL4A6-209ENST00000545689 RWDD1Q9H446 243 aaPredicted RBP15.95■□□□□ 0.14
COL4A6-209ENST00000545689 OS9Q13438 667 aaPredicted RBP15.94■□□□□ 0.14
COL4A6-209ENST00000545689 GOLGA6L6A8MZA4 724 aa15.93■□□□□ 0.14
COL4A6-209ENST00000545689 FANCD2Q9BXW9 1451 aa15.93■□□□□ 0.14
COL4A6-209ENST00000545689 PMFBP1Q8TBY8 1022 aa15.93■□□□□ 0.14
COL4A6-209ENST00000545689 CUX1P39880 1505 aa15.91■□□□□ 0.14
COL4A6-209ENST00000545689 RUSC2Q8N2Y8 1516 aa15.91■□□□□ 0.14
COL4A6-209ENST00000545689 CHMP4AQ9BY43 222 aa15.91■□□□□ 0.14
COL4A6-209ENST00000545689 A0A0G2JS52 829 aa15.91■□□□□ 0.14
COL4A6-209ENST00000545689 DNTTIP2Q5QJE6 756 aaKnown RBP15.9■□□□□ 0.14
COL4A6-209ENST00000545689 UACAQ9BZF9 1416 aa15.9■□□□□ 0.14
COL4A6-209ENST00000545689 RTF1Q92541 710 aaKnown RBP15.9■□□□□ 0.14
COL4A6-209ENST00000545689 MYBBP1AQ9BQG0 1328 aaKnown RBP15.89■□□□□ 0.13
COL4A6-209ENST00000545689 GOLGA2Q08379 1002 aa15.88■□□□□ 0.13
COL4A6-209ENST00000545689 GGT6Q6P531 493 aa15.88■□□□□ 0.13
COL4A6-209ENST00000545689 KCNJ4P48050 445 aa15.87■□□□□ 0.13
COL4A6-209ENST00000545689 CCDC144AA2RUR9 1427 aa15.86■□□□□ 0.13
COL4A6-209ENST00000545689 NRDCO43847 1150 aa15.86■□□□□ 0.13
COL4A6-209ENST00000545689 PLEKHG5O94827 1062 aa15.86■□□□□ 0.13
COL4A6-209ENST00000545689 U2AF1L5P0DN76 240 aaPredicted RBP15.86■□□□□ 0.13
COL4A6-209ENST00000545689 U2AF1Q01081 240 aaKnown RBP eCLIP15.86■□□□□ 0.13
COL4A6-209ENST00000545689 SPAG9O60271 1321 aaKnown RBP15.86■□□□□ 0.13
COL4A6-209ENST00000545689 DEKP35659 375 aaKnown RBP15.86■□□□□ 0.13
COL4A6-209ENST00000545689 TERF2IPQ9NYB0 399 aa15.86■□□□□ 0.13
COL4A6-209ENST00000545689 KIF21BO75037 1637 aa15.86■□□□□ 0.13
COL4A6-209ENST00000545689 NAP1L5Q96NT1 182 aaPredicted RBP15.85■□□□□ 0.13
COL4A6-209ENST00000545689 GBP4Q96PP9 640 aa15.85■□□□□ 0.13
COL4A6-209ENST00000545689 TSHZ2Q9NRE2 1034 aa15.85■□□□□ 0.13
COL4A6-209ENST00000545689 FGD1P98174 961 aa15.85■□□□□ 0.13
COL4A6-209ENST00000545689 HNRNPMP52272 730 aaKnown RBP eCLIP15.84■□□□□ 0.13
COL4A6-209ENST00000545689 LMOD2Q6P5Q4 547 aa15.82■□□□□ 0.12
COL4A6-209ENST00000545689 IPO9Q96P70 1041 aaKnown RBP15.82■□□□□ 0.12
COL4A6-209ENST00000545689 ERICH3Q5RHP9 1530 aa15.82■□□□□ 0.12
COL4A6-209ENST00000545689 GOLGA6L4A6NEF3 574 aa15.82■□□□□ 0.12
COL4A6-209ENST00000545689 ITPRIPQ8IWB1 547 aa15.81■□□□□ 0.12
COL4A6-209ENST00000545689 LMOD3Q0VAK6 560 aa15.81■□□□□ 0.12
COL4A6-209ENST00000545689 ZBED9Q6R2W3 1325 aa15.81■□□□□ 0.12
COL4A6-209ENST00000545689 FGD5Q6ZNL6 1462 aa15.81■□□□□ 0.12
COL4A6-209ENST00000545689 KIF3BO15066 747 aa15.81■□□□□ 0.12
COL4A6-209ENST00000545689 JPH4Q96JJ6 628 aa15.81■□□□□ 0.12
COL4A6-209ENST00000545689 MYOM3Q5VTT5 1437 aa15.81■□□□□ 0.12
COL4A6-209ENST00000545689 SAFB2Q14151 953 aaKnown RBP eCLIP15.8■□□□□ 0.12
COL4A6-209ENST00000545689 STK26Q9P289 416 aa15.8■□□□□ 0.12
COL4A6-209ENST00000545689 CENPJQ9HC77 1338 aaPredicted RBP15.8■□□□□ 0.12
COL4A6-209ENST00000545689 IGF1RP08069 1367 aa15.8■□□□□ 0.12
COL4A6-209ENST00000545689 HDAC5Q9UQL6 1122 aa15.79■□□□□ 0.12
COL4A6-209ENST00000545689 FGD6Q6ZV73 1430 aa15.78■□□□□ 0.12
COL4A6-209ENST00000545689 MSNP26038 577 aaKnown RBP15.78■□□□□ 0.12
COL4A6-209ENST00000545689 CHAF1AQ13111 956 aaPredicted RBP15.78■□□□□ 0.12
COL4A6-209ENST00000545689 PRKRIP1Q9H875 184 aaPredicted RBP15.78■□□□□ 0.12
COL4A6-209ENST00000545689 GAPVD1Q14C86 1478 aa15.77■□□□□ 0.12
COL4A6-209ENST00000545689 USP47Q96K76 1375 aa15.77■□□□□ 0.12
COL4A6-209ENST00000545689 NGEFQ8N5V2 710 aa15.77■□□□□ 0.12
COL4A6-209ENST00000545689 KIAA1211Q6ZU35 1233 aa15.77■□□□□ 0.11
COL4A6-209ENST00000545689 HMMRO75330 724 aa15.76■□□□□ 0.11
COL4A6-209ENST00000545689 SMC4Q9NTJ3 1288 aa15.76■□□□□ 0.11
COL4A6-209ENST00000545689 LRRC9Q6ZRR7 1453 aa15.75■□□□□ 0.11
COL4A6-209ENST00000545689 PLCB2Q00722 1185 aa15.75■□□□□ 0.11
COL4A6-209ENST00000545689 NCAPD3P42695 1498 aa15.75■□□□□ 0.11
COL4A6-209ENST00000545689 MLECQ14165 292 aa15.75■□□□□ 0.11
COL4A6-209ENST00000545689 FYCO1Q9BQS8 1478 aa15.74■□□□□ 0.11
COL4A6-209ENST00000545689 CENPQQ7L2Z9 268 aaPredicted RBP15.74■□□□□ 0.11
COL4A6-209ENST00000545689 CASKIN1Q8WXD9 1431 aa15.74■□□□□ 0.11
COL4A6-209ENST00000545689 STAC3Q96MF2 364 aa15.74■□□□□ 0.11
COL4A6-209ENST00000545689 STK31Q9BXU1 1019 aa15.74■□□□□ 0.11
COL4A6-209ENST00000545689 ST20-MTHFSA0A0A6YYL1 179 aa15.73■□□□□ 0.11
COL4A6-209ENST00000545689 SYAP1Q96A49 352 aaPredicted RBP15.73■□□□□ 0.11
COL4A6-209ENST00000545689 PTPRGP23470 1445 aa15.73■□□□□ 0.11
COL4A6-209ENST00000545689 TPRNQ4KMQ1 711 aa15.73■□□□□ 0.11
COL4A6-209ENST00000545689 HTATSF1O43719 755 aaKnown RBP15.73■□□□□ 0.11
COL4A6-209ENST00000545689 WASHC2CQ9Y4E1 1318 aa15.73■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms