RNA–Protein interactions for RNA: ENST00000542786.1

LDB3-207, Transcript of LIM domain binding 3, humanhuman

TSL 2 BASIC

Gene LDB3, Length 1,889 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-207ENST00000542786 SIN3AQ96ST3 1273 aa20.67■□□□□ 0.9
LDB3-207ENST00000542786 RRP7BPQ9NSQ0 103 aa20.67■□□□□ 0.9
LDB3-207ENST00000542786 CDC42BPAQ5VT25 1732 aa20.66■□□□□ 0.9
LDB3-207ENST00000542786 CHIC2Q9UKJ5 165 aa20.65■□□□□ 0.9
LDB3-207ENST00000542786 TIMELESSQ9UNS1 1208 aa20.64■□□□□ 0.9
LDB3-207ENST00000542786 CROCC2H7BZ55 1655 aa20.63■□□□□ 0.89
LDB3-207ENST00000542786 PLEKHD1A6NEE1 506 aa20.62■□□□□ 0.89
LDB3-207ENST00000542786 ABCC2Q92887 1545 aa20.61■□□□□ 0.89
LDB3-207ENST00000542786 CFDP1Q9UEE9 299 aaPredicted RBP20.61■□□□□ 0.89
LDB3-207ENST00000542786 ADGRL2O95490 1459 aa20.6■□□□□ 0.89
LDB3-207ENST00000542786 ADGBQ8N7X0 1667 aa20.59■□□□□ 0.89
LDB3-207ENST00000542786 KDM5BQ9UGL1 1544 aa20.56■□□□□ 0.88
LDB3-207ENST00000542786 NEUROD1Q13562 356 aa20.56■□□□□ 0.88
LDB3-207ENST00000542786 UHRF1BP1LA0JNW5 1464 aa20.55■□□□□ 0.88
LDB3-207ENST00000542786 NCOA1Q15788 1441 aa20.55■□□□□ 0.88
LDB3-207ENST00000542786 SHANK2Q9UPX8 1470 aa20.54■□□□□ 0.88
LDB3-207ENST00000542786 PREX2Q70Z35 1606 aa20.54■□□□□ 0.88
LDB3-207ENST00000542786 PPP1R15AO75807 674 aaPredicted RBP20.52■□□□□ 0.87
LDB3-207ENST00000542786 ACIN1Q9UKV3 1341 aaKnown RBP20.51■□□□□ 0.87
LDB3-207ENST00000542786 ARHGEF5Q12774 1597 aa20.51■□□□□ 0.87
LDB3-207ENST00000542786 CDC42BPBQ9Y5S2 1711 aa20.51■□□□□ 0.87
LDB3-207ENST00000542786 TTC37Q6PGP7 1564 aa20.49■□□□□ 0.87
LDB3-207ENST00000542786 SAMD9LQ8IVG5 1584 aa20.49■□□□□ 0.87
LDB3-207ENST00000542786 MBD5Q9P267 1494 aa20.48■□□□□ 0.87
LDB3-207ENST00000542786 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP20.48■□□□□ 0.87
LDB3-207ENST00000542786 MPHOSPH9Q99550 1183 aa20.47■□□□□ 0.87
LDB3-207ENST00000542786 ZCCHC11Q5TAX3 1644 aaKnown RBP20.47■□□□□ 0.87
LDB3-207ENST00000542786 PZPP20742 1482 aa20.46■□□□□ 0.87
LDB3-207ENST00000542786 ZNF777Q9ULD5 760 aaPredicted RBP20.46■□□□□ 0.87
LDB3-207ENST00000542786 TONSLQ96HA7 1378 aa20.45■□□□□ 0.86
LDB3-207ENST00000542786 MIER1Q8N108 512 aa20.45■□□□□ 0.86
LDB3-207ENST00000542786 C9orf84Q5VXU9 1444 aa20.44■□□□□ 0.86
LDB3-207ENST00000542786 TRIM52Q96A61 297 aa20.44■□□□□ 0.86
LDB3-207ENST00000542786 ANKRD30AQ9BXX3 1397 aa20.44■□□□□ 0.86
LDB3-207ENST00000542786 ANKRD30BQ9BXX2 1392 aa20.42■□□□□ 0.86
LDB3-207ENST00000542786 CCDC141Q6ZP82 1450 aa20.38■□□□□ 0.85
LDB3-207ENST00000542786 MYO5CQ9NQX4 1742 aa20.38■□□□□ 0.85
LDB3-207ENST00000542786 ANKRD50Q9ULJ7 1429 aa20.38■□□□□ 0.85
LDB3-207ENST00000542786 MAST1Q9Y2H9 1570 aa20.37■□□□□ 0.85
LDB3-207ENST00000542786 KDM5DQ9BY66 1539 aa20.36■□□□□ 0.85
LDB3-207ENST00000542786 RPRD2Q5VT52 1461 aaKnown RBP20.36■□□□□ 0.85
LDB3-207ENST00000542786 ARHGAP5Q13017 1502 aa20.35■□□□□ 0.85
LDB3-207ENST00000542786 SYCP2Q9BX26 1530 aa20.35■□□□□ 0.85
LDB3-207ENST00000542786 HNRNPMP52272 730 aaKnown RBP eCLIP20.35■□□□□ 0.85
LDB3-207ENST00000542786 KIAA1107Q9UPP5 1409 aa20.34■□□□□ 0.85
LDB3-207ENST00000542786 FOXD1Q16676 465 aa20.33■□□□□ 0.85
LDB3-207ENST00000542786 TEX14Q8IWB6 1497 aa20.33■□□□□ 0.85
LDB3-207ENST00000542786 PLCH2O75038 1416 aa20.32■□□□□ 0.84
LDB3-207ENST00000542786 PLEKHH2Q8IVE3 1493 aa20.31■□□□□ 0.84
LDB3-207ENST00000542786 KIF15Q9NS87 1388 aa20.31■□□□□ 0.84
LDB3-207ENST00000542786 RSPH4AQ5TD94 716 aa20.3■□□□□ 0.84
LDB3-207ENST00000542786 SLC4A1APQ9BWU0 796 aaKnown RBP20.3■□□□□ 0.84
LDB3-207ENST00000542786 ARHGEF12Q9NZN5 1544 aa20.3■□□□□ 0.84
LDB3-207ENST00000542786 ARAP3Q8WWN8 1544 aa20.29■□□□□ 0.84
LDB3-207ENST00000542786 TSPY4P0CV99 314 aa20.28■□□□□ 0.84
LDB3-207ENST00000542786 TSPY10P0CW01 314 aa20.28■□□□□ 0.84
LDB3-207ENST00000542786 PLXNC1O60486 1568 aa20.27■□□□□ 0.84
LDB3-207ENST00000542786 ABCC1P33527 1531 aa20.26■□□□□ 0.83
LDB3-207ENST00000542786 L3MBTL2Q969R5 705 aa20.25■□□□□ 0.83
LDB3-207ENST00000542786 WDR7Q9Y4E6 1490 aa20.25■□□□□ 0.83
LDB3-207ENST00000542786 KCNH8Q96L42 1107 aa20.23■□□□□ 0.83
LDB3-207ENST00000542786 UNC13BO14795 1591 aa20.22■□□□□ 0.83
LDB3-207ENST00000542786 NUP155O75694 1391 aa20.2■□□□□ 0.82
LDB3-207ENST00000542786 PKD2Q13563 968 aa20.2■□□□□ 0.82
LDB3-207ENST00000542786 ABCA9Q8IUA7 1624 aa20.19■□□□□ 0.82
LDB3-207ENST00000542786 OSCARQ8IYS5 282 aa20.19■□□□□ 0.82
LDB3-207ENST00000542786 EFCAB2Q5VUJ9 269 aa20.18■□□□□ 0.82
LDB3-207ENST00000542786 FAM135AQ9P2D6 1515 aa20.17■□□□□ 0.82
LDB3-207ENST00000542786 TRAPPC8Q9Y2L5 1435 aa20.16■□□□□ 0.82
LDB3-207ENST00000542786 CENPBP07199 599 aaPredicted RBP20.16■□□□□ 0.82
LDB3-207ENST00000542786 HIRIP3Q9BW71 556 aaPredicted RBP20.16■□□□□ 0.82
LDB3-207ENST00000542786 DUOX2Q9NRD8 1548 aa20.15■□□□□ 0.82
LDB3-207ENST00000542786 MAGI2Q86UL8 1455 aa20.15■□□□□ 0.82
LDB3-207ENST00000542786 NBPF8Q3BBV2 869 aa20.14■□□□□ 0.81
LDB3-207ENST00000542786 SCAF1Q9H7N4 1312 aaKnown RBP20.14■□□□□ 0.81
LDB3-207ENST00000542786 ASXL2Q76L83 1435 aa20.14■□□□□ 0.81
LDB3-207ENST00000542786 DDX10Q13206 875 aaKnown RBP20.12■□□□□ 0.81
LDB3-207ENST00000542786 IQGAP3Q86VI3 1631 aa20.12■□□□□ 0.81
LDB3-207ENST00000542786 ERBINQ96RT1 1412 aa20.11■□□□□ 0.81
LDB3-207ENST00000542786 ZFYVE16Q7Z3T8 1539 aa20.1■□□□□ 0.81
LDB3-207ENST00000542786 HSPA5P11021 654 aaKnown RBP20.09■□□□□ 0.81
LDB3-207ENST00000542786 RTEL1-TNFRSF6BF6WH68 1400 aa20.09■□□□□ 0.81
LDB3-207ENST00000542786 SPATA31E1Q6ZUB1 1445 aa20.08■□□□□ 0.8
LDB3-207ENST00000542786 YTHDC1Q96MU7 727 aaKnown RBP20.07■□□□□ 0.8
LDB3-207ENST00000542786 FANCAO15360 1455 aa20.07■□□□□ 0.8
LDB3-207ENST00000542786 UHRF1BP1Q6BDS2 1440 aa20.07■□□□□ 0.8
LDB3-207ENST00000542786 INO80Q9ULG1 1556 aaPredicted RBP20.06■□□□□ 0.8
LDB3-207ENST00000542786 PLA2R1Q13018 1463 aa20.06■□□□□ 0.8
LDB3-207ENST00000542786 EIF4G2P78344 907 aaKnown RBP eCLIP20.04■□□□□ 0.8
LDB3-207ENST00000542786 WASHC2AQ641Q2 1341 aa20.02■□□□□ 0.79
LDB3-207ENST00000542786 ATP10AO60312 1499 aa20.01■□□□□ 0.79
LDB3-207ENST00000542786 SPAG9O60271 1321 aaKnown RBP20■□□□□ 0.79
LDB3-207ENST00000542786 DEPDC5O75140 1603 aa20■□□□□ 0.79
LDB3-207ENST00000542786 ATP7AQ04656 1500 aa20■□□□□ 0.79
LDB3-207ENST00000542786 AFAP1Q8N556 730 aa19.99■□□□□ 0.79
LDB3-207ENST00000542786 ADGRL1O94910 1474 aa19.99■□□□□ 0.79
LDB3-207ENST00000542786 RALGAPBQ86X10 1494 aa19.99■□□□□ 0.79
LDB3-207ENST00000542786 SCAPERQ9BY12 1400 aa19.96■□□□□ 0.79
LDB3-207ENST00000542786 POLR1AO95602 1720 aaPredicted RBP19.96■□□□□ 0.79
LDB3-207ENST00000542786 C11orf95C9JLR9 678 aaPredicted RBP19.95■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms