RNA–Protein interactions for RNA: ENST00000540998.5

CDC42SE1-207, Transcript of CDC42 small effector 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CDC42SE1, Length 3,181 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42SE1-207ENST00000540998 EHBP1L1Q8N3D4 1523 aa14.22□□□□□ -0.13
CDC42SE1-207ENST00000540998 SLC4A1APQ9BWU0 796 aaKnown RBP14.21□□□□□ -0.13
CDC42SE1-207ENST00000540998 NBR1Q14596 966 aa14.21□□□□□ -0.14
CDC42SE1-207ENST00000540998 NCOA1Q15788 1441 aa14.2□□□□□ -0.14
CDC42SE1-207ENST00000540998 PAK3O75914 559 aaPredicted RBP14.2□□□□□ -0.14
CDC42SE1-207ENST00000540998 THOC2Q8NI27 1593 aaKnown RBP14.18□□□□□ -0.14
CDC42SE1-207ENST00000540998 LAMC3Q9Y6N6 1575 aa14.18□□□□□ -0.14
CDC42SE1-207ENST00000540998 ZBED9Q6R2W3 1325 aa14.17□□□□□ -0.14
CDC42SE1-207ENST00000540998 ZNF777Q9ULD5 760 aaPredicted RBP14.17□□□□□ -0.14
CDC42SE1-207ENST00000540998 HECW1Q76N89 1606 aa14.17□□□□□ -0.14
CDC42SE1-207ENST00000540998 ARHGEF11O15085 1522 aa14.17□□□□□ -0.14
CDC42SE1-207ENST00000540998 EPRSP07814 1512 aaKnown RBP14.17□□□□□ -0.14
CDC42SE1-207ENST00000540998 SALL2Q9Y467 1007 aaPredicted RBP14.16□□□□□ -0.14
CDC42SE1-207ENST00000540998 ABCA5Q8WWZ7 1642 aa14.16□□□□□ -0.14
CDC42SE1-207ENST00000540998 ANKRD30BQ9BXX2 1392 aa14.16□□□□□ -0.14
CDC42SE1-207ENST00000540998 GCC2Q8IWJ2 1684 aa14.15□□□□□ -0.14
CDC42SE1-207ENST00000540998 TCOF1Q13428 1488 aaKnown RBP14.13□□□□□ -0.15
CDC42SE1-207ENST00000540998 TEX14Q8IWB6 1497 aa14.12□□□□□ -0.15
CDC42SE1-207ENST00000540998 PDS5BQ9NTI5 1447 aa14.12□□□□□ -0.15
CDC42SE1-207ENST00000540998 RPRD2Q5VT52 1461 aaKnown RBP14.11□□□□□ -0.15
CDC42SE1-207ENST00000540998 ABCC5O15440 1437 aa14.1□□□□□ -0.15
CDC42SE1-207ENST00000540998 DAPK1P53355 1430 aa14.1□□□□□ -0.15
CDC42SE1-207ENST00000540998 SPATA31E1Q6ZUB1 1445 aa14.1□□□□□ -0.15
CDC42SE1-207ENST00000540998 DEKP35659 375 aaKnown RBP14.1□□□□□ -0.15
CDC42SE1-207ENST00000540998 KDM2AQ9Y2K7 1162 aa14.1□□□□□ -0.15
CDC42SE1-207ENST00000540998 CCDC136Q96JN2 1154 aa14.09□□□□□ -0.15
CDC42SE1-207ENST00000540998 DHX29Q7Z478 1369 aaKnown RBP14.08□□□□□ -0.16
CDC42SE1-207ENST00000540998 PKD2Q13563 968 aa14.07□□□□□ -0.16
CDC42SE1-207ENST00000540998 BCORL1Q5H9F3 1711 aa14.07□□□□□ -0.16
CDC42SE1-207ENST00000540998 USP47Q96K76 1375 aa14.06□□□□□ -0.16
CDC42SE1-207ENST00000540998 KIF21AQ7Z4S6 1674 aa14.06□□□□□ -0.16
CDC42SE1-207ENST00000540998 NOP58Q9Y2X3 529 aaKnown RBP14.06□□□□□ -0.16
CDC42SE1-207ENST00000540998 SKAP1Q86WV1 359 aa14.06□□□□□ -0.16
CDC42SE1-207ENST00000540998 IQGAP2Q13576 1575 aa14.05□□□□□ -0.16
CDC42SE1-207ENST00000540998 NPM2Q86SE8 214 aaKnown RBP14.05□□□□□ -0.16
CDC42SE1-207ENST00000540998 WDR62O43379 1518 aa14.05□□□□□ -0.16
CDC42SE1-207ENST00000540998 NUDCQ9Y266 331 aa14.05□□□□□ -0.16
CDC42SE1-207ENST00000540998 PRG4Q92954 1404 aaPredicted RBP14.04□□□□□ -0.16
CDC42SE1-207ENST00000540998 ERICH6BQ5W0A0 696 aa14.04□□□□□ -0.16
CDC42SE1-207ENST00000540998 MIA2Q96PC5 1412 aa14.04□□□□□ -0.16
CDC42SE1-207ENST00000540998 TMC1Q8TDI8 760 aa14.03□□□□□ -0.16
CDC42SE1-207ENST00000540998 PZPP20742 1482 aa14.03□□□□□ -0.16
CDC42SE1-207ENST00000540998 CFDP1Q9UEE9 299 aaPredicted RBP14.02□□□□□ -0.16
CDC42SE1-207ENST00000540998 TARBP1Q13395 1621 aaKnown RBP14.02□□□□□ -0.17
CDC42SE1-207ENST00000540998 SMG6Q86US8 1419 aaKnown RBP14.01□□□□□ -0.17
CDC42SE1-207ENST00000540998 PNISRQ8TF01 805 aaKnown RBP14.01□□□□□ -0.17
CDC42SE1-207ENST00000540998 ZNF608Q9ULD9 1512 aaPredicted RBP14□□□□□ -0.17
CDC42SE1-207ENST00000540998 ST20-MTHFSA0A0A6YYL1 179 aa14□□□□□ -0.17
CDC42SE1-207ENST00000540998 NUP153P49790 1475 aaKnown RBP14□□□□□ -0.17
CDC42SE1-207ENST00000540998 CARD11Q9BXL7 1154 aa13.99□□□□□ -0.17
CDC42SE1-207ENST00000540998 EXOC6Q8TAG9 804 aa13.99□□□□□ -0.17
CDC42SE1-207ENST00000540998 FBLN2P98095 1184 aa13.99□□□□□ -0.17
CDC42SE1-207ENST00000540998 PBRM1Q86U86 1689 aa13.98□□□□□ -0.17
CDC42SE1-207ENST00000540998 DNMT1P26358 1616 aaKnown RBP13.98□□□□□ -0.17
CDC42SE1-207ENST00000540998 ROCK1Q13464 1354 aa13.97□□□□□ -0.17
CDC42SE1-207ENST00000540998 PLIN1O60240 522 aa13.96□□□□□ -0.17
CDC42SE1-207ENST00000540998 DCAF11Q8TEB1 546 aa13.95□□□□□ -0.18
CDC42SE1-207ENST00000540998 CDCA7LQ96GN5 454 aa13.95□□□□□ -0.18
CDC42SE1-207ENST00000540998 CAMSAP2Q08AD1 1489 aa13.95□□□□□ -0.18
CDC42SE1-207ENST00000540998 PLB1Q6P1J6 1458 aa13.95□□□□□ -0.18
CDC42SE1-207ENST00000540998 ADAMTS12P58397 1594 aa13.95□□□□□ -0.18
CDC42SE1-207ENST00000540998 DISP1Q96F81 1524 aa13.95□□□□□ -0.18
CDC42SE1-207ENST00000540998 ANP32AP39687 249 aaKnown RBP13.94□□□□□ -0.18
CDC42SE1-207ENST00000540998 LAS1LQ9Y4W2 734 aaKnown RBP13.94□□□□□ -0.18
CDC42SE1-207ENST00000540998 RGL3Q3MIN7 710 aa13.93□□□□□ -0.18
CDC42SE1-207ENST00000540998 NUP155O75694 1391 aa13.93□□□□□ -0.18
CDC42SE1-207ENST00000540998 KIAA1107Q9UPP5 1409 aa13.93□□□□□ -0.18
CDC42SE1-207ENST00000540998 KIF14Q15058 1648 aa13.93□□□□□ -0.18
CDC42SE1-207ENST00000540998 RNF123Q5XPI4 1314 aa13.93□□□□□ -0.18
CDC42SE1-207ENST00000540998 IPO9Q96P70 1041 aaKnown RBP13.93□□□□□ -0.18
CDC42SE1-207ENST00000540998 MBD5Q9P267 1494 aa13.93□□□□□ -0.18
CDC42SE1-207ENST00000540998 POLR1AO95602 1720 aaPredicted RBP13.92□□□□□ -0.18
CDC42SE1-207ENST00000540998 ZBTB47Q9UFB7 747 aaPredicted RBP13.91□□□□□ -0.18
CDC42SE1-207ENST00000540998 KDM5CP41229 1560 aa13.91□□□□□ -0.18
CDC42SE1-207ENST00000540998 CC2D1BQ5T0F9 858 aaKnown RBP13.91□□□□□ -0.18
CDC42SE1-207ENST00000540998 KIAA0556O60303 1618 aa13.9□□□□□ -0.19
CDC42SE1-207ENST00000540998 HNRNPMP52272 730 aaKnown RBP eCLIP13.89□□□□□ -0.19
CDC42SE1-207ENST00000540998 RRP1P56182 461 aaKnown RBP13.89□□□□□ -0.19
CDC42SE1-207ENST00000540998 NBPF1Q3BBV0 1214 aa13.89□□□□□ -0.19
CDC42SE1-207ENST00000540998 GPATCH8Q9UKJ3 1502 aaKnown RBP13.89□□□□□ -0.19
CDC42SE1-207ENST00000540998 ANKRD50Q9ULJ7 1429 aa13.89□□□□□ -0.19
CDC42SE1-207ENST00000540998 RTN4Q9NQC3 1192 aaKnown RBP13.88□□□□□ -0.19
CDC42SE1-207ENST00000540998 RAPGEF6Q8TEU7 1601 aa13.88□□□□□ -0.19
CDC42SE1-207ENST00000540998 RCAN3Q9UKA8 241 aa13.87□□□□□ -0.19
CDC42SE1-207ENST00000540998 TROQ12816 1431 aaPredicted RBP13.86□□□□□ -0.19
CDC42SE1-207ENST00000540998 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.86□□□□□ -0.194e-8■■□□□ 14.5
CDC42SE1-207ENST00000540998 KIAA0586Q9BVV6 1533 aa13.86□□□□□ -0.19
CDC42SE1-207ENST00000540998 MYBBP1AQ9BQG0 1328 aaKnown RBP13.85□□□□□ -0.19
CDC42SE1-207ENST00000540998 KIF15Q9NS87 1388 aa13.85□□□□□ -0.19
CDC42SE1-207ENST00000540998 ROCK2O75116 1388 aaKnown RBP13.84□□□□□ -0.19
CDC42SE1-207ENST00000540998 ANKRD30AQ9BXX3 1397 aa13.84□□□□□ -0.19
CDC42SE1-207ENST00000540998 RTL5Q5HYW3 569 aaPredicted RBP13.84□□□□□ -0.19
CDC42SE1-207ENST00000540998 IL27Q8NEV9 243 aa13.84□□□□□ -0.19
CDC42SE1-207ENST00000540998 LRPPRCP42704 1394 aaKnown RBP13.83□□□□□ -0.19
CDC42SE1-207ENST00000540998 PDE4AP27815 886 aa13.83□□□□□ -0.2
CDC42SE1-207ENST00000540998 CHMP7Q8WUX9 453 aaPredicted RBP13.83□□□□□ -0.2
CDC42SE1-207ENST00000540998 SLC4A3P48751 1232 aa13.83□□□□□ -0.2
CDC42SE1-207ENST00000540998 C20orf194Q5TEA3 1177 aa13.83□□□□□ -0.2
CDC42SE1-207ENST00000540998 RALGAPBQ86X10 1494 aa13.82□□□□□ -0.2
CDC42SE1-207ENST00000540998 CRBNQ96SW2 442 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms