RNA–Protein interactions for RNA: ENST00000540747.1

YBX3-209, Transcript of Y-box binding protein 3, humanhuman

TSL 5

Gene YBX3, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-209ENST00000540747 HSPA2P54652 639 aa12.29□□□□□ -0.44
YBX3-209ENST00000540747 ATP10AO60312 1499 aa12.28□□□□□ -0.44
YBX3-209ENST00000540747 FER1L4A9Z1Z3 1794 aa12.28□□□□□ -0.44
YBX3-209ENST00000540747 C9orf84Q5VXU9 1444 aa12.28□□□□□ -0.44
YBX3-209ENST00000540747 FMN1Q68DA7 1419 aa12.28□□□□□ -0.44
YBX3-209ENST00000540747 KDM5CP41229 1560 aa12.27□□□□□ -0.44
YBX3-209ENST00000540747 KIF14Q15058 1648 aa12.26□□□□□ -0.45
YBX3-209ENST00000540747 MYO5CQ9NQX4 1742 aa12.25□□□□□ -0.45
YBX3-209ENST00000540747 TROQ12816 1431 aaPredicted RBP12.25□□□□□ -0.45
YBX3-209ENST00000540747 ZNF518AQ6AHZ1 1483 aa12.25□□□□□ -0.45
YBX3-209ENST00000540747 EFCAB2Q5VUJ9 269 aa12.24□□□□□ -0.45
YBX3-209ENST00000540747 REREQ9P2R6 1566 aa12.24□□□□□ -0.45
YBX3-209ENST00000540747 DIP2CQ9Y2E4 1556 aa12.22□□□□□ -0.45
YBX3-209ENST00000540747 MLECQ14165 292 aa12.22□□□□□ -0.45
YBX3-209ENST00000540747 PREX1Q8TCU6 1659 aa12.22□□□□□ -0.45
YBX3-209ENST00000540747 LRRIQ1Q96JM4 1722 aa12.21□□□□□ -0.45
YBX3-209ENST00000540747 CERKQ8TCT0 537 aa12.21□□□□□ -0.45
YBX3-209ENST00000540747 MLH3Q9UHC1 1453 aa12.21□□□□□ -0.46
YBX3-209ENST00000540747 CDK11AQ9UQ88 783 aaPredicted RBP12.2□□□□□ -0.46
YBX3-209ENST00000540747 ARHGAP5Q13017 1502 aa12.2□□□□□ -0.46
YBX3-209ENST00000540747 ABCA6Q8N139 1617 aa12.19□□□□□ -0.46
YBX3-209ENST00000540747 AFAP1Q8N556 730 aa12.19□□□□□ -0.46
YBX3-209ENST00000540747 AGLP35573 1532 aa12.19□□□□□ -0.46
YBX3-209ENST00000540747 STRCQ7RTU9 1775 aa12.19□□□□□ -0.46
YBX3-209ENST00000540747 ABCC1P33527 1531 aa12.18□□□□□ -0.46
YBX3-209ENST00000540747 CDC42BPBQ9Y5S2 1711 aa12.18□□□□□ -0.46
YBX3-209ENST00000540747 CEBPAP49715 358 aaPredicted RBP12.18□□□□□ -0.46
YBX3-209ENST00000540747 PLPPR3Q6T4P5 718 aa12.18□□□□□ -0.46
YBX3-209ENST00000540747 CLIP1P30622 1438 aa12.18□□□□□ -0.46
YBX3-209ENST00000540747 UBTFP17480 764 aaKnown RBP12.17□□□□□ -0.46
YBX3-209ENST00000540747 PREX2Q70Z35 1606 aa12.17□□□□□ -0.46
YBX3-209ENST00000540747 TRAPPC8Q9Y2L5 1435 aa12.17□□□□□ -0.46
YBX3-209ENST00000540747 CASKIN1Q8WXD9 1431 aa12.16□□□□□ -0.46
YBX3-209ENST00000540747 UHRF1BP1Q6BDS2 1440 aa12.15□□□□□ -0.46
YBX3-209ENST00000540747 SETD1BQ9UPS6 1966 aaKnown RBP12.15□□□□□ -0.46
YBX3-209ENST00000540747 ITSN2Q9NZM3 1697 aa12.14□□□□□ -0.47
YBX3-209ENST00000540747 ATP1B4Q9UN42 357 aaPredicted RBP12.14□□□□□ -0.47
YBX3-209ENST00000540747 CCDC18Q5T9S5 1454 aa12.14□□□□□ -0.47
YBX3-209ENST00000540747 C3P01024 1663 aa12.13□□□□□ -0.47
YBX3-209ENST00000540747 PTPRTO14522 1441 aa12.13□□□□□ -0.47
YBX3-209ENST00000540747 KIDINS220Q9ULH0 1771 aa12.13□□□□□ -0.47
YBX3-209ENST00000540747 CHIC1Q5VXU3 224 aa12.13□□□□□ -0.47
YBX3-209ENST00000540747 DMRT2Q9Y5R5 561 aa12.11□□□□□ -0.47
YBX3-209ENST00000540747 LTBP4Q8N2S1 1624 aa12.11□□□□□ -0.47
YBX3-209ENST00000540747 SAMD9LQ8IVG5 1584 aa12.1□□□□□ -0.47
YBX3-209ENST00000540747 EHMT2Q96KQ7 1210 aa12.1□□□□□ -0.47
YBX3-209ENST00000540747 CDC42BPAQ5VT25 1732 aa12.1□□□□□ -0.47
YBX3-209ENST00000540747 NCOA1Q15788 1441 aa12.1□□□□□ -0.47
YBX3-209ENST00000540747 CNTLNQ9NXG0 1405 aa12.1□□□□□ -0.47
YBX3-209ENST00000540747 FYCO1Q9BQS8 1478 aa12.09□□□□□ -0.47
YBX3-209ENST00000540747 NPATQ14207 1427 aa12.08□□□□□ -0.48
YBX3-209ENST00000540747 GPATCH8Q9UKJ3 1502 aaKnown RBP12.07□□□□□ -0.48
YBX3-209ENST00000540747 PLXNC1O60486 1568 aa12.07□□□□□ -0.48
YBX3-209ENST00000540747 IQSEC2Q5JU85 1478 aa12.07□□□□□ -0.48
YBX3-209ENST00000540747 MROH2AA6NES4 1674 aa12.06□□□□□ -0.48
YBX3-209ENST00000540747 SYCP2Q9BX26 1530 aa12.06□□□□□ -0.48
YBX3-209ENST00000540747 KIAA1107Q9UPP5 1409 aa12.05□□□□□ -0.48
YBX3-209ENST00000540747 INO80Q9ULG1 1556 aaPredicted RBP12.05□□□□□ -0.48
YBX3-209ENST00000540747 ATP7AQ04656 1500 aa12.03□□□□□ -0.48
YBX3-209ENST00000540747 MYT1LQ9UL68 1186 aa12.03□□□□□ -0.48
YBX3-209ENST00000540747 CAMSAP1Q5T5Y3 1602 aa12.02□□□□□ -0.49
YBX3-209ENST00000540747 ILDR2Q71H61 639 aa12.02□□□□□ -0.49
YBX3-209ENST00000540747 ZMYM3Q14202 1370 aa12.02□□□□□ -0.49
YBX3-209ENST00000540747 PLEKHH2Q8IVE3 1493 aa12.02□□□□□ -0.49
YBX3-209ENST00000540747 ZNF142P52746 1687 aaPredicted RBP12.01□□□□□ -0.49
YBX3-209ENST00000540747 SPAG9O60271 1321 aaKnown RBP12.01□□□□□ -0.49
YBX3-209ENST00000540747 PTPRKQ15262 1439 aa12.01□□□□□ -0.49
YBX3-209ENST00000540747 PLA2R1Q13018 1463 aa12.01□□□□□ -0.49
YBX3-209ENST00000540747 TCOF1Q13428 1488 aaKnown RBP12.01□□□□□ -0.49
YBX3-209ENST00000540747 ESF1Q9H501 851 aaKnown RBP12□□□□□ -0.49
YBX3-209ENST00000540747 A2MP01023 1474 aa12□□□□□ -0.49
YBX3-209ENST00000540747 HNRNPMP52272 730 aaKnown RBP eCLIP11.99□□□□□ -0.49
YBX3-209ENST00000540747 DISP3Q9P2K9 1392 aa11.99□□□□□ -0.49
YBX3-209ENST00000540747 MYO3AQ8NEV4 1616 aa11.99□□□□□ -0.49
YBX3-209ENST00000540747 SUPT6HQ7KZ85 1726 aaKnown RBP11.98□□□□□ -0.49
YBX3-209ENST00000540747 SPATA31D1Q6ZQQ2 1576 aa11.98□□□□□ -0.49
YBX3-209ENST00000540747 MBD5Q9P267 1494 aa11.98□□□□□ -0.49
YBX3-209ENST00000540747 CLTCQ00610 1675 aaKnown RBP11.97□□□□□ -0.49
YBX3-209ENST00000540747 CEP170BQ9Y4F5 1589 aaPredicted RBP11.97□□□□□ -0.49
YBX3-209ENST00000540747 ZNF777Q9ULD5 760 aaPredicted RBP11.97□□□□□ -0.49
YBX3-209ENST00000540747 TIAM1Q13009 1591 aa11.96□□□□□ -0.49
YBX3-209ENST00000540747 CCNB3Q8WWL7 1395 aa11.96□□□□□ -0.49
YBX3-209ENST00000540747 SOCS7O14512 581 aa11.96□□□□□ -0.49
YBX3-209ENST00000540747 CFDP1Q9UEE9 299 aaPredicted RBP11.96□□□□□ -0.49
YBX3-209ENST00000540747 ZNF335Q9H4Z2 1342 aaPredicted RBP11.95□□□□□ -0.5
YBX3-209ENST00000540747 NCKAP5LQ9HCH0 1330 aa11.95□□□□□ -0.5
YBX3-209ENST00000540747 PPP6R1Q9UPN7 881 aa11.95□□□□□ -0.5
YBX3-209ENST00000540747 RTEL1-TNFRSF6BF6WH68 1400 aa11.94□□□□□ -0.5
YBX3-209ENST00000540747 ADGBQ8N7X0 1667 aa11.94□□□□□ -0.5
YBX3-209ENST00000540747 PKD2Q13563 968 aa11.94□□□□□ -0.5
YBX3-209ENST00000540747 CEP162Q5TB80 1403 aa11.94□□□□□ -0.5
YBX3-209ENST00000540747 ZNF644Q9H582 1327 aaPredicted RBP11.93□□□□□ -0.5
YBX3-209ENST00000540747 A2ML1A8K2U0 1454 aa11.93□□□□□ -0.5
YBX3-209ENST00000540747 MTUS2Q5JR59 1369 aa11.92□□□□□ -0.5
YBX3-209ENST00000540747 EHBP1L1Q8N3D4 1523 aa11.92□□□□□ -0.5
YBX3-209ENST00000540747 DHX29Q7Z478 1369 aaKnown RBP11.92□□□□□ -0.5
YBX3-209ENST00000540747 FAM135AQ9P2D6 1515 aa11.91□□□□□ -0.5
YBX3-209ENST00000540747 DNMT1P26358 1616 aaKnown RBP11.91□□□□□ -0.5
YBX3-209ENST00000540747 GGT6Q6P531 493 aa11.9□□□□□ -0.5
YBX3-209ENST00000540747 NEURL4Q96JN8 1562 aa11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms